Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS13605

Experiment: Pullulan (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS13600 and ABZR88_RS13605 are separated by 322 nucleotidesABZR88_RS13605 and ABZR88_RS13610 are separated by 70 nucleotides ABZR88_RS13600: ABZR88_RS13600 - FAD:protein FMN transferase, at 3,399,630 to 3,400,562 _RS13600 ABZR88_RS13605: ABZR88_RS13605 - alpha-L-fucosidase, at 3,400,885 to 3,402,672 _RS13605 ABZR88_RS13610: ABZR88_RS13610 - sugar-binding domain-containing protein, at 3,402,743 to 3,405,712 _RS13610 Position (kb) 3400 3401 3402 3403Strain fitness (log2 ratio) -1 0 1at 3399.886 kb on + strand, within ABZR88_RS13600at 3399.984 kb on - strand, within ABZR88_RS13600at 3400.044 kb on + strand, within ABZR88_RS13600at 3400.066 kb on - strand, within ABZR88_RS13600at 3400.277 kb on + strand, within ABZR88_RS13600at 3400.298 kb on + strand, within ABZR88_RS13600at 3400.299 kb on - strand, within ABZR88_RS13600at 3400.587 kb on + strandat 3400.629 kb on + strandat 3400.640 kb on - strandat 3400.782 kb on + strandat 3400.817 kb on - strandat 3400.948 kb on + strandat 3400.948 kb on + strandat 3400.949 kb on - strandat 3401.109 kb on - strand, within ABZR88_RS13605at 3401.173 kb on + strand, within ABZR88_RS13605at 3401.286 kb on + strand, within ABZR88_RS13605at 3401.376 kb on + strand, within ABZR88_RS13605at 3401.597 kb on - strand, within ABZR88_RS13605at 3401.598 kb on + strand, within ABZR88_RS13605at 3401.598 kb on + strand, within ABZR88_RS13605at 3401.701 kb on + strand, within ABZR88_RS13605at 3401.740 kb on + strand, within ABZR88_RS13605at 3401.814 kb on + strand, within ABZR88_RS13605at 3402.172 kb on - strand, within ABZR88_RS13605at 3402.173 kb on + strand, within ABZR88_RS13605at 3402.412 kb on - strand, within ABZR88_RS13605at 3402.523 kb on - strandat 3402.572 kb on - strandat 3402.574 kb on - strandat 3402.623 kb on + strandat 3402.678 kb on - strandat 3402.679 kb on + strandat 3402.707 kb on - strandat 3402.873 kb on - strandat 3402.890 kb on - strandat 3403.005 kb on - strandat 3403.361 kb on - strand, within ABZR88_RS13610at 3403.361 kb on - strand, within ABZR88_RS13610at 3403.444 kb on - strand, within ABZR88_RS13610at 3403.483 kb on + strand, within ABZR88_RS13610at 3403.484 kb on - strand, within ABZR88_RS13610at 3403.619 kb on + strand, within ABZR88_RS13610

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Per-strain Table

Position Strand Gene LocusTag Fraction Pullulan (C)
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3,399,886 + ABZR88_RS13600 0.27 -0.4
3,399,984 - ABZR88_RS13600 0.38 -0.5
3,400,044 + ABZR88_RS13600 0.44 -0.8
3,400,066 - ABZR88_RS13600 0.47 -0.2
3,400,277 + ABZR88_RS13600 0.69 +0.3
3,400,298 + ABZR88_RS13600 0.72 -0.3
3,400,299 - ABZR88_RS13600 0.72 -0.1
3,400,587 + +0.0
3,400,629 + -0.2
3,400,640 - +0.4
3,400,782 + +0.1
3,400,817 - +0.5
3,400,948 + +0.5
3,400,948 + -0.1
3,400,949 - +0.1
3,401,109 - ABZR88_RS13605 0.13 +0.0
3,401,173 + ABZR88_RS13605 0.16 -0.2
3,401,286 + ABZR88_RS13605 0.22 +0.2
3,401,376 + ABZR88_RS13605 0.27 +0.6
3,401,597 - ABZR88_RS13605 0.40 -0.3
3,401,598 + ABZR88_RS13605 0.40 -1.2
3,401,598 + ABZR88_RS13605 0.40 -0.3
3,401,701 + ABZR88_RS13605 0.46 -0.1
3,401,740 + ABZR88_RS13605 0.48 -0.0
3,401,814 + ABZR88_RS13605 0.52 -0.2
3,402,172 - ABZR88_RS13605 0.72 +0.0
3,402,173 + ABZR88_RS13605 0.72 -1.1
3,402,412 - ABZR88_RS13605 0.85 -0.1
3,402,523 - -1.0
3,402,572 - +0.2
3,402,574 - +0.9
3,402,623 + -0.4
3,402,678 - -0.2
3,402,679 + -0.5
3,402,707 - -0.1
3,402,873 - -1.1
3,402,890 - +0.6
3,403,005 - -0.1
3,403,361 - ABZR88_RS13610 0.21 -0.9
3,403,361 - ABZR88_RS13610 0.21 -1.0
3,403,444 - ABZR88_RS13610 0.24 -0.1
3,403,483 + ABZR88_RS13610 0.25 -0.3
3,403,484 - ABZR88_RS13610 0.25 -0.5
3,403,619 + ABZR88_RS13610 0.29 +0.2

Or see this region's nucleotide sequence