Experiment: Pullulan (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS12550 and ABZR88_RS12555 are separated by 382 nucleotides ABZR88_RS12555 and ABZR88_RS12560 are separated by 50 nucleotides ABZR88_RS12560 and ABZR88_RS12565 are separated by 2 nucleotides
ABZR88_RS12550: ABZR88_RS12550 - efflux transporter outer membrane subunit, at 3,091,999 to 3,093,411
_RS12550
ABZR88_RS12555: ABZR88_RS12555 - response regulator transcription factor, at 3,093,794 to 3,094,165
_RS12555
ABZR88_RS12560: ABZR88_RS12560 - glycosyltransferase family 2 protein, at 3,094,216 to 3,094,947
_RS12560
ABZR88_RS12565: ABZR88_RS12565 - DUF2304 domain-containing protein, at 3,094,950 to 3,095,306
_RS12565
Position (kb)
3093
3094
3095 Strain fitness (log2 ratio)
-1
0
1
2 at 3092.941 kb on + strand, within ABZR88_RS12550 at 3092.942 kb on - strand, within ABZR88_RS12550 at 3092.956 kb on - strand, within ABZR88_RS12550 at 3093.043 kb on - strand, within ABZR88_RS12550 at 3093.177 kb on - strand, within ABZR88_RS12550 at 3093.599 kb on + strand at 3093.697 kb on + strand at 3093.786 kb on - strand at 3093.982 kb on + strand, within ABZR88_RS12555 at 3093.992 kb on + strand, within ABZR88_RS12555 at 3093.992 kb on + strand, within ABZR88_RS12555 at 3093.997 kb on + strand, within ABZR88_RS12555 at 3094.021 kb on + strand, within ABZR88_RS12555 at 3094.248 kb on - strand at 3094.248 kb on - strand at 3094.257 kb on + strand at 3094.267 kb on + strand at 3094.268 kb on - strand at 3094.356 kb on - strand, within ABZR88_RS12560 at 3094.377 kb on + strand, within ABZR88_RS12560 at 3094.378 kb on - strand, within ABZR88_RS12560 at 3094.412 kb on + strand, within ABZR88_RS12560 at 3094.548 kb on - strand, within ABZR88_RS12560 at 3094.558 kb on + strand, within ABZR88_RS12560 at 3094.768 kb on + strand, within ABZR88_RS12560 at 3094.785 kb on + strand, within ABZR88_RS12560 at 3094.886 kb on + strand at 3094.892 kb on - strand at 3094.892 kb on - strand at 3094.946 kb on - strand at 3094.980 kb on - strand at 3095.043 kb on + strand, within ABZR88_RS12565 at 3095.062 kb on + strand, within ABZR88_RS12565
Per-strain Table
Position Strand Gene LocusTag Fraction Pullulan (C) remove 3,092,941 + ABZR88_RS12550 0.67 +2.0 3,092,942 - ABZR88_RS12550 0.67 -0.5 3,092,956 - ABZR88_RS12550 0.68 -0.2 3,093,043 - ABZR88_RS12550 0.74 -0.1 3,093,177 - ABZR88_RS12550 0.83 +0.3 3,093,599 + -0.2 3,093,697 + +0.1 3,093,786 - -1.1 3,093,982 + ABZR88_RS12555 0.51 +0.1 3,093,992 + ABZR88_RS12555 0.53 +0.0 3,093,992 + ABZR88_RS12555 0.53 +0.0 3,093,997 + ABZR88_RS12555 0.55 +1.1 3,094,021 + ABZR88_RS12555 0.61 +0.1 3,094,248 - +0.1 3,094,248 - -0.0 3,094,257 + -0.1 3,094,267 + +0.2 3,094,268 - -0.1 3,094,356 - ABZR88_RS12560 0.19 +0.1 3,094,377 + ABZR88_RS12560 0.22 +0.2 3,094,378 - ABZR88_RS12560 0.22 +0.4 3,094,412 + ABZR88_RS12560 0.27 -0.1 3,094,548 - ABZR88_RS12560 0.45 +0.2 3,094,558 + ABZR88_RS12560 0.47 -0.1 3,094,768 + ABZR88_RS12560 0.75 +0.2 3,094,785 + ABZR88_RS12560 0.78 +1.1 3,094,886 + -0.2 3,094,892 - -0.1 3,094,892 - +0.1 3,094,946 - +0.0 3,094,980 - +2.7 3,095,043 + ABZR88_RS12565 0.26 -0.3 3,095,062 + ABZR88_RS12565 0.31 +0.1
Or see this region's nucleotide sequence