Experiment: Pullulan (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS19960 and ABZR88_RS19965 overlap by 14 nucleotides ABZR88_RS19965 and ABZR88_RS19970 are separated by 10 nucleotides ABZR88_RS19970 and ABZR88_RS19975 are separated by 240 nucleotides ABZR88_RS19975 and ABZR88_RS19980 overlap by 11 nucleotides
ABZR88_RS19960: ABZR88_RS19960 - fumarylacetoacetate hydrolase family protein, at 4,852,360 to 4,853,217
_RS19960
ABZR88_RS19965: ABZR88_RS19965 - amidohydrolase, at 4,853,204 to 4,854,034
_RS19965
ABZR88_RS19970: ABZR88_RS19970 - SDR family oxidoreductase, at 4,854,045 to 4,854,833
_RS19970
ABZR88_RS19975: ABZR88_RS19975 - hypothetical protein, at 4,855,074 to 4,855,436
_RS19975
ABZR88_RS19980: ABZR88_RS19980 - HAD family phosphatase, at 4,855,426 to 4,856,052
_RS19980
Position (kb) 4854
4855 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4853.081 kb on + strand, within ABZR88_RS19960 at 4853.131 kb on + strand, within ABZR88_RS19960 at 4853.203 kb on + strand at 4853.257 kb on + strand at 4853.318 kb on + strand, within ABZR88_RS19965 at 4853.487 kb on - strand, within ABZR88_RS19965 at 4853.727 kb on + strand, within ABZR88_RS19965 at 4853.731 kb on + strand, within ABZR88_RS19965 at 4853.920 kb on - strand, within ABZR88_RS19965 at 4853.995 kb on + strand at 4854.023 kb on + strand at 4854.031 kb on - strand at 4854.070 kb on + strand at 4854.197 kb on + strand, within ABZR88_RS19970 at 4854.227 kb on - strand, within ABZR88_RS19970 at 4854.258 kb on - strand, within ABZR88_RS19970 at 4854.308 kb on - strand, within ABZR88_RS19970 at 4854.371 kb on - strand, within ABZR88_RS19970 at 4854.465 kb on - strand, within ABZR88_RS19970 at 4854.556 kb on + strand, within ABZR88_RS19970 at 4854.621 kb on + strand, within ABZR88_RS19970 at 4854.621 kb on + strand, within ABZR88_RS19970 at 4854.836 kb on + strand at 4854.920 kb on - strand at 4854.920 kb on - strand at 4854.975 kb on + strand at 4854.990 kb on - strand at 4855.033 kb on - strand at 4855.226 kb on + strand, within ABZR88_RS19975 at 4855.234 kb on - strand, within ABZR88_RS19975 at 4855.253 kb on + strand, within ABZR88_RS19975 at 4855.495 kb on + strand, within ABZR88_RS19980 at 4855.540 kb on - strand, within ABZR88_RS19980 at 4855.540 kb on - strand, within ABZR88_RS19980 at 4855.757 kb on - strand, within ABZR88_RS19980
Per-strain Table
Position Strand Gene LocusTag Fraction Pullulan (C) remove 4,853,081 + ABZR88_RS19960 0.84 +0.5 4,853,131 + ABZR88_RS19960 0.90 +1.1 4,853,203 + +0.1 4,853,257 + -0.3 4,853,318 + ABZR88_RS19965 0.14 +1.1 4,853,487 - ABZR88_RS19965 0.34 +0.2 4,853,727 + ABZR88_RS19965 0.63 +2.1 4,853,731 + ABZR88_RS19965 0.63 +0.5 4,853,920 - ABZR88_RS19965 0.86 +0.7 4,853,995 + -1.5 4,854,023 + +0.0 4,854,031 - +1.7 4,854,070 + -1.5 4,854,197 + ABZR88_RS19970 0.19 -0.3 4,854,227 - ABZR88_RS19970 0.23 +0.0 4,854,258 - ABZR88_RS19970 0.27 -0.2 4,854,308 - ABZR88_RS19970 0.33 -0.0 4,854,371 - ABZR88_RS19970 0.41 +0.2 4,854,465 - ABZR88_RS19970 0.53 +0.4 4,854,556 + ABZR88_RS19970 0.65 -0.8 4,854,621 + ABZR88_RS19970 0.73 -1.2 4,854,621 + ABZR88_RS19970 0.73 -0.1 4,854,836 + +0.3 4,854,920 - -0.2 4,854,920 - -0.5 4,854,975 + -0.3 4,854,990 - -0.3 4,855,033 - +0.3 4,855,226 + ABZR88_RS19975 0.42 -2.4 4,855,234 - ABZR88_RS19975 0.44 -1.2 4,855,253 + ABZR88_RS19975 0.49 -0.5 4,855,495 + ABZR88_RS19980 0.11 -0.3 4,855,540 - ABZR88_RS19980 0.18 +0.0 4,855,540 - ABZR88_RS19980 0.18 +0.1 4,855,757 - ABZR88_RS19980 0.53 +0.9
Or see this region's nucleotide sequence