Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS18960

Experiment: Pullulan (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS18955 and ABZR88_RS18960 are separated by 219 nucleotidesABZR88_RS18960 and ABZR88_RS18965 are separated by 337 nucleotides ABZR88_RS18955: ABZR88_RS18955 - homoserine kinase, at 4,631,804 to 4,632,784 _RS18955 ABZR88_RS18960: ABZR88_RS18960 - threonine synthase, at 4,633,004 to 4,634,311 _RS18960 ABZR88_RS18965: ABZR88_RS18965 - DUF4407 domain-containing protein, at 4,634,649 to 4,635,767 _RS18965 Position (kb) 4633 4634 4635Strain fitness (log2 ratio) -1 0 1at 4632.925 kb on + strandat 4632.925 kb on + strandat 4632.957 kb on + strandat 4634.336 kb on + strandat 4634.427 kb on + strandat 4634.561 kb on - strandat 4634.597 kb on + strandat 4634.604 kb on - strandat 4634.624 kb on + strandat 4634.654 kb on + strandat 4634.802 kb on + strand, within ABZR88_RS18965at 4634.879 kb on + strand, within ABZR88_RS18965at 4634.893 kb on - strand, within ABZR88_RS18965at 4635.255 kb on + strand, within ABZR88_RS18965

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Per-strain Table

Position Strand Gene LocusTag Fraction Pullulan (C)
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4,632,925 + -0.2
4,632,925 + +0.3
4,632,957 + +0.3
4,634,336 + -0.7
4,634,427 + -0.7
4,634,561 - -0.2
4,634,597 + +0.3
4,634,604 - -0.0
4,634,624 + +0.2
4,634,654 + +1.7
4,634,802 + ABZR88_RS18965 0.14 +0.8
4,634,879 + ABZR88_RS18965 0.21 -0.5
4,634,893 - ABZR88_RS18965 0.22 -0.6
4,635,255 + ABZR88_RS18965 0.54 -0.5

Or see this region's nucleotide sequence