Experiment: Pullulan (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS03720 and ABZR88_RS03725 are separated by 88 nucleotides ABZR88_RS03725 and ABZR88_RS03730 are separated by 60 nucleotides ABZR88_RS03730 and ABZR88_RS03735 are separated by 344 nucleotides
ABZR88_RS03720: ABZR88_RS03720 - metallophosphoesterase, at 883,145 to 883,957
_RS03720
ABZR88_RS03725: ABZR88_RS03725 - DUF4286 family protein, at 884,046 to 884,360
_RS03725
ABZR88_RS03730: ABZR88_RS03730 - tetratricopeptide repeat protein, at 884,421 to 886,220
_RS03730
ABZR88_RS03735: ABZR88_RS03735 - prolyl oligopeptidase family serine peptidase, at 886,565 to 888,439
_RS03735
Position (kb) 884
885
886
887 Strain fitness (log2 ratio) -2
-1
0
1 at 883.703 kb on - strand, within ABZR88_RS03720 at 883.736 kb on + strand, within ABZR88_RS03720 at 883.845 kb on + strand, within ABZR88_RS03720 at 883.955 kb on + strand at 884.085 kb on - strand, within ABZR88_RS03725 at 884.163 kb on + strand, within ABZR88_RS03725 at 884.200 kb on + strand, within ABZR88_RS03725 at 884.240 kb on + strand, within ABZR88_RS03725 at 884.245 kb on + strand, within ABZR88_RS03725 at 884.271 kb on - strand, within ABZR88_RS03725 at 884.339 kb on - strand at 884.339 kb on - strand at 884.350 kb on + strand at 884.671 kb on + strand, within ABZR88_RS03730 at 884.800 kb on + strand, within ABZR88_RS03730 at 885.101 kb on + strand, within ABZR88_RS03730 at 885.169 kb on - strand, within ABZR88_RS03730 at 885.174 kb on - strand, within ABZR88_RS03730 at 885.382 kb on + strand, within ABZR88_RS03730 at 885.383 kb on - strand, within ABZR88_RS03730 at 885.512 kb on - strand, within ABZR88_RS03730 at 885.604 kb on - strand, within ABZR88_RS03730 at 885.861 kb on - strand, within ABZR88_RS03730 at 885.935 kb on + strand, within ABZR88_RS03730 at 885.938 kb on - strand, within ABZR88_RS03730 at 886.135 kb on + strand at 886.244 kb on - strand at 886.423 kb on - strand at 886.478 kb on - strand at 886.483 kb on - strand at 886.978 kb on - strand, within ABZR88_RS03735 at 887.159 kb on + strand, within ABZR88_RS03735 at 887.160 kb on - strand, within ABZR88_RS03735
Per-strain Table
Position Strand Gene LocusTag Fraction Pullulan (C) remove 883,703 - ABZR88_RS03720 0.69 +0.1 883,736 + ABZR88_RS03720 0.73 -0.1 883,845 + ABZR88_RS03720 0.86 -2.3 883,955 + -0.1 884,085 - ABZR88_RS03725 0.12 +0.1 884,163 + ABZR88_RS03725 0.37 +0.1 884,200 + ABZR88_RS03725 0.49 -0.3 884,240 + ABZR88_RS03725 0.62 -0.1 884,245 + ABZR88_RS03725 0.63 -0.1 884,271 - ABZR88_RS03725 0.71 +0.5 884,339 - +0.0 884,339 - -1.9 884,350 + +0.3 884,671 + ABZR88_RS03730 0.14 -0.3 884,800 + ABZR88_RS03730 0.21 +0.2 885,101 + ABZR88_RS03730 0.38 +0.4 885,169 - ABZR88_RS03730 0.42 -0.0 885,174 - ABZR88_RS03730 0.42 -0.3 885,382 + ABZR88_RS03730 0.53 -0.0 885,383 - ABZR88_RS03730 0.53 +0.2 885,512 - ABZR88_RS03730 0.61 -0.3 885,604 - ABZR88_RS03730 0.66 -0.6 885,861 - ABZR88_RS03730 0.80 -1.1 885,935 + ABZR88_RS03730 0.84 -0.7 885,938 - ABZR88_RS03730 0.84 -0.2 886,135 + -0.6 886,244 - +0.2 886,423 - -0.2 886,478 - -1.5 886,483 - -0.1 886,978 - ABZR88_RS03735 0.22 +0.7 887,159 + ABZR88_RS03735 0.32 -0.2 887,160 - ABZR88_RS03735 0.32 -0.9
Or see this region's nucleotide sequence