Experiment: Starch (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS21290 and ABZR88_RS21295 are separated by 257 nucleotides ABZR88_RS21295 and ABZR88_RS21300 are separated by 528 nucleotides ABZR88_RS21300 and ABZR88_RS21305 are separated by 83 nucleotides ABZR88_RS21305 and ABZR88_RS21310 are separated by 134 nucleotides
ABZR88_RS21290: ABZR88_RS21290 - cupin domain-containing protein, at 5,132,052 to 5,132,453
_RS21290
ABZR88_RS21295: ABZR88_RS21295 - hypothetical protein, at 5,132,711 to 5,132,911
_RS21295
ABZR88_RS21300: ABZR88_RS21300 - hypothetical protein, at 5,133,440 to 5,134,081
_RS21300
ABZR88_RS21305: ABZR88_RS21305 - alpha-ketoglutarate-dependent dioxygenase AlkB, at 5,134,165 to 5,134,779
_RS21305
ABZR88_RS21310: ABZR88_RS21310 - DUF4142 domain-containing protein, at 5,134,914 to 5,135,495
_RS21310
Position (kb) 5133
5134
5135 Strain fitness (log2 ratio) -1
0
1 at 5132.574 kb on + strand at 5132.574 kb on + strand at 5132.656 kb on + strand at 5132.661 kb on - strand at 5132.697 kb on - strand at 5132.842 kb on - strand, within ABZR88_RS21295 at 5132.877 kb on - strand, within ABZR88_RS21295 at 5133.023 kb on - strand at 5133.043 kb on - strand at 5133.171 kb on + strand at 5133.271 kb on + strand at 5133.350 kb on - strand at 5133.382 kb on - strand at 5133.655 kb on + strand, within ABZR88_RS21300 at 5133.656 kb on - strand, within ABZR88_RS21300 at 5134.009 kb on - strand, within ABZR88_RS21300 at 5134.089 kb on + strand at 5134.090 kb on - strand at 5134.101 kb on - strand at 5134.182 kb on - strand at 5134.182 kb on - strand at 5134.182 kb on - strand at 5134.392 kb on - strand, within ABZR88_RS21305 at 5134.641 kb on + strand, within ABZR88_RS21305 at 5134.767 kb on - strand at 5134.870 kb on + strand at 5134.870 kb on + strand at 5134.924 kb on + strand at 5134.929 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Starch (C) remove 5,132,574 + -0.5 5,132,574 + +0.3 5,132,656 + -0.4 5,132,661 - -1.1 5,132,697 - -0.5 5,132,842 - ABZR88_RS21295 0.65 +0.9 5,132,877 - ABZR88_RS21295 0.83 +0.0 5,133,023 - +0.3 5,133,043 - +0.1 5,133,171 + -1.7 5,133,271 + +0.1 5,133,350 - -0.1 5,133,382 - +0.9 5,133,655 + ABZR88_RS21300 0.33 +1.5 5,133,656 - ABZR88_RS21300 0.34 -0.2 5,134,009 - ABZR88_RS21300 0.89 +0.7 5,134,089 + -0.3 5,134,090 - +0.1 5,134,101 - -0.5 5,134,182 - +1.5 5,134,182 - -0.5 5,134,182 - +0.1 5,134,392 - ABZR88_RS21305 0.37 -0.5 5,134,641 + ABZR88_RS21305 0.77 -0.1 5,134,767 - -0.2 5,134,870 + +0.4 5,134,870 + -0.4 5,134,924 + +0.2 5,134,929 + +0.1
Or see this region's nucleotide sequence