Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS06445

Experiment: Starch (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS06435 and ABZR88_RS06440 are separated by 86 nucleotidesABZR88_RS06440 and ABZR88_RS06445 are separated by 17 nucleotidesABZR88_RS06445 and ABZR88_RS06450 are separated by 68 nucleotidesABZR88_RS06450 and ABZR88_RS06455 are separated by 364 nucleotides ABZR88_RS06435: ABZR88_RS06435 - GTPase ObgE, at 1,590,580 to 1,591,581 _RS06435 ABZR88_RS06440: ABZR88_RS06440 - hypothetical protein, at 1,591,668 to 1,592,063 _RS06440 ABZR88_RS06445: ABZR88_RS06445 - MgtC/SapB family protein, at 1,592,081 to 1,592,770 _RS06445 ABZR88_RS06450: ABZR88_RS06450 - hypothetical protein, at 1,592,839 to 1,593,267 _RS06450 ABZR88_RS06455: ABZR88_RS06455 - glutamine-hydrolyzing GMP synthase, at 1,593,632 to 1,595,161 _RS06455 Position (kb) 1592 1593Strain fitness (log2 ratio) -1 0 1 2at 1591.573 kb on - strandat 1591.587 kb on - strandat 1591.721 kb on + strand, within ABZR88_RS06440at 1591.723 kb on + strand, within ABZR88_RS06440at 1591.798 kb on - strand, within ABZR88_RS06440at 1591.854 kb on - strand, within ABZR88_RS06440at 1591.875 kb on + strand, within ABZR88_RS06440at 1591.875 kb on + strand, within ABZR88_RS06440at 1591.980 kb on + strand, within ABZR88_RS06440at 1592.093 kb on + strandat 1592.311 kb on + strand, within ABZR88_RS06445at 1592.359 kb on + strand, within ABZR88_RS06445at 1592.475 kb on - strand, within ABZR88_RS06445at 1592.626 kb on + strand, within ABZR88_RS06445at 1592.770 kb on + strandat 1592.983 kb on - strand, within ABZR88_RS06450at 1593.002 kb on - strand, within ABZR88_RS06450at 1593.213 kb on + strand, within ABZR88_RS06450at 1593.218 kb on + strand, within ABZR88_RS06450at 1593.234 kb on - strandat 1593.307 kb on + strandat 1593.308 kb on - strandat 1593.310 kb on - strandat 1593.310 kb on - strandat 1593.315 kb on - strandat 1593.331 kb on + strandat 1593.488 kb on + strandat 1593.554 kb on + strandat 1593.555 kb on - strandat 1593.605 kb on + strandat 1593.606 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Starch (C)
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1,591,573 - -0.3
1,591,587 - -0.1
1,591,721 + ABZR88_RS06440 0.13 -0.0
1,591,723 + ABZR88_RS06440 0.14 -0.2
1,591,798 - ABZR88_RS06440 0.33 +0.3
1,591,854 - ABZR88_RS06440 0.47 -0.2
1,591,875 + ABZR88_RS06440 0.52 +0.2
1,591,875 + ABZR88_RS06440 0.52 +0.2
1,591,980 + ABZR88_RS06440 0.79 +0.5
1,592,093 + -0.0
1,592,311 + ABZR88_RS06445 0.33 -1.1
1,592,359 + ABZR88_RS06445 0.40 -0.1
1,592,475 - ABZR88_RS06445 0.57 +0.8
1,592,626 + ABZR88_RS06445 0.79 -0.8
1,592,770 + +1.6
1,592,983 - ABZR88_RS06450 0.34 -0.6
1,593,002 - ABZR88_RS06450 0.38 -0.2
1,593,213 + ABZR88_RS06450 0.87 +0.2
1,593,218 + ABZR88_RS06450 0.88 +0.2
1,593,234 - +0.4
1,593,307 + +2.2
1,593,308 - -0.5
1,593,310 - +0.2
1,593,310 - -1.4
1,593,315 - +1.0
1,593,331 + +0.1
1,593,488 + +0.2
1,593,554 + +0.6
1,593,555 - -0.2
1,593,605 + +0.2
1,593,606 - -1.4

Or see this region's nucleotide sequence