Experiment: Starch (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS06435 and ABZR88_RS06440 are separated by 86 nucleotides ABZR88_RS06440 and ABZR88_RS06445 are separated by 17 nucleotides ABZR88_RS06445 and ABZR88_RS06450 are separated by 68 nucleotides ABZR88_RS06450 and ABZR88_RS06455 are separated by 364 nucleotides
ABZR88_RS06435: ABZR88_RS06435 - GTPase ObgE, at 1,590,580 to 1,591,581
_RS06435
ABZR88_RS06440: ABZR88_RS06440 - hypothetical protein, at 1,591,668 to 1,592,063
_RS06440
ABZR88_RS06445: ABZR88_RS06445 - MgtC/SapB family protein, at 1,592,081 to 1,592,770
_RS06445
ABZR88_RS06450: ABZR88_RS06450 - hypothetical protein, at 1,592,839 to 1,593,267
_RS06450
ABZR88_RS06455: ABZR88_RS06455 - glutamine-hydrolyzing GMP synthase, at 1,593,632 to 1,595,161
_RS06455
Position (kb)
1592
1593 Strain fitness (log2 ratio)
-1
0
1
2 at 1591.573 kb on - strand at 1591.587 kb on - strand at 1591.721 kb on + strand, within ABZR88_RS06440 at 1591.723 kb on + strand, within ABZR88_RS06440 at 1591.798 kb on - strand, within ABZR88_RS06440 at 1591.854 kb on - strand, within ABZR88_RS06440 at 1591.875 kb on + strand, within ABZR88_RS06440 at 1591.875 kb on + strand, within ABZR88_RS06440 at 1591.980 kb on + strand, within ABZR88_RS06440 at 1592.093 kb on + strand at 1592.311 kb on + strand, within ABZR88_RS06445 at 1592.359 kb on + strand, within ABZR88_RS06445 at 1592.475 kb on - strand, within ABZR88_RS06445 at 1592.626 kb on + strand, within ABZR88_RS06445 at 1592.770 kb on + strand at 1592.983 kb on - strand, within ABZR88_RS06450 at 1593.002 kb on - strand, within ABZR88_RS06450 at 1593.213 kb on + strand, within ABZR88_RS06450 at 1593.218 kb on + strand, within ABZR88_RS06450 at 1593.234 kb on - strand at 1593.307 kb on + strand at 1593.308 kb on - strand at 1593.310 kb on - strand at 1593.310 kb on - strand at 1593.315 kb on - strand at 1593.331 kb on + strand at 1593.488 kb on + strand at 1593.554 kb on + strand at 1593.555 kb on - strand at 1593.605 kb on + strand at 1593.606 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Starch (C) remove 1,591,573 - -0.3 1,591,587 - -0.1 1,591,721 + ABZR88_RS06440 0.13 -0.0 1,591,723 + ABZR88_RS06440 0.14 -0.2 1,591,798 - ABZR88_RS06440 0.33 +0.3 1,591,854 - ABZR88_RS06440 0.47 -0.2 1,591,875 + ABZR88_RS06440 0.52 +0.2 1,591,875 + ABZR88_RS06440 0.52 +0.2 1,591,980 + ABZR88_RS06440 0.79 +0.5 1,592,093 + -0.0 1,592,311 + ABZR88_RS06445 0.33 -1.1 1,592,359 + ABZR88_RS06445 0.40 -0.1 1,592,475 - ABZR88_RS06445 0.57 +0.8 1,592,626 + ABZR88_RS06445 0.79 -0.8 1,592,770 + +1.6 1,592,983 - ABZR88_RS06450 0.34 -0.6 1,593,002 - ABZR88_RS06450 0.38 -0.2 1,593,213 + ABZR88_RS06450 0.87 +0.2 1,593,218 + ABZR88_RS06450 0.88 +0.2 1,593,234 - +0.4 1,593,307 + +2.2 1,593,308 - -0.5 1,593,310 - +0.2 1,593,310 - -1.4 1,593,315 - +1.0 1,593,331 + +0.1 1,593,488 + +0.2 1,593,554 + +0.6 1,593,555 - -0.2 1,593,605 + +0.2 1,593,606 - -1.4
Or see this region's nucleotide sequence