Experiment: Starch (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS02070 and ABZR88_RS02075 are separated by 268 nucleotides ABZR88_RS02075 and ABZR88_RS02080 overlap by 64 nucleotides ABZR88_RS02080 and ABZR88_RS02085 are separated by 218 nucleotides
ABZR88_RS02070: ABZR88_RS02070 - ABC transporter permease, at 464,204 to 465,082
_RS02070
ABZR88_RS02075: ABZR88_RS02075 - ATP-binding protein, at 465,351 to 466,682
_RS02075
ABZR88_RS02080: ABZR88_RS02080 - PAS domain-containing protein, at 466,619 to 467,239
_RS02080
ABZR88_RS02085: ABZR88_RS02085 - amidohydrolase, at 467,458 to 469,131
_RS02085
Position (kb) 465
466
467 Strain fitness (log2 ratio) -1
0
1 at 465.271 kb on - strand at 465.325 kb on + strand at 465.454 kb on + strand at 465.455 kb on - strand at 465.648 kb on - strand, within ABZR88_RS02075 at 465.650 kb on + strand, within ABZR88_RS02075 at 465.655 kb on - strand, within ABZR88_RS02075 at 465.954 kb on + strand, within ABZR88_RS02075 at 465.955 kb on - strand, within ABZR88_RS02075 at 465.955 kb on - strand, within ABZR88_RS02075 at 465.975 kb on + strand, within ABZR88_RS02075 at 466.028 kb on + strand, within ABZR88_RS02075 at 466.035 kb on + strand, within ABZR88_RS02075 at 466.050 kb on + strand, within ABZR88_RS02075 at 466.051 kb on - strand, within ABZR88_RS02075 at 466.213 kb on - strand, within ABZR88_RS02075 at 466.329 kb on - strand, within ABZR88_RS02075 at 466.395 kb on - strand, within ABZR88_RS02075 at 466.760 kb on + strand, within ABZR88_RS02080 at 466.876 kb on + strand, within ABZR88_RS02080 at 466.876 kb on + strand, within ABZR88_RS02080 at 466.893 kb on + strand, within ABZR88_RS02080 at 466.894 kb on - strand, within ABZR88_RS02080 at 466.941 kb on + strand, within ABZR88_RS02080 at 466.957 kb on + strand, within ABZR88_RS02080 at 467.027 kb on + strand, within ABZR88_RS02080 at 467.039 kb on - strand, within ABZR88_RS02080 at 467.117 kb on - strand, within ABZR88_RS02080 at 467.117 kb on - strand, within ABZR88_RS02080 at 467.448 kb on + strand at 467.448 kb on + strand at 467.622 kb on - strand at 467.640 kb on - strand, within ABZR88_RS02085
Per-strain Table
Position Strand Gene LocusTag Fraction Starch (C) remove 465,271 - -0.3 465,325 + +0.3 465,454 + +0.5 465,455 - -0.5 465,648 - ABZR88_RS02075 0.22 +0.2 465,650 + ABZR88_RS02075 0.22 +0.1 465,655 - ABZR88_RS02075 0.23 -0.5 465,954 + ABZR88_RS02075 0.45 +0.0 465,955 - ABZR88_RS02075 0.45 +0.2 465,955 - ABZR88_RS02075 0.45 -0.3 465,975 + ABZR88_RS02075 0.47 -0.2 466,028 + ABZR88_RS02075 0.51 -0.7 466,035 + ABZR88_RS02075 0.51 -0.1 466,050 + ABZR88_RS02075 0.52 -0.7 466,051 - ABZR88_RS02075 0.53 -0.4 466,213 - ABZR88_RS02075 0.65 +0.3 466,329 - ABZR88_RS02075 0.73 -0.8 466,395 - ABZR88_RS02075 0.78 -0.2 466,760 + ABZR88_RS02080 0.23 -0.1 466,876 + ABZR88_RS02080 0.41 -0.7 466,876 + ABZR88_RS02080 0.41 +0.2 466,893 + ABZR88_RS02080 0.44 -0.5 466,894 - ABZR88_RS02080 0.44 +0.2 466,941 + ABZR88_RS02080 0.52 -0.1 466,957 + ABZR88_RS02080 0.54 -0.7 467,027 + ABZR88_RS02080 0.66 -0.3 467,039 - ABZR88_RS02080 0.68 +0.3 467,117 - ABZR88_RS02080 0.80 -0.8 467,117 - ABZR88_RS02080 0.80 +1.6 467,448 + +0.4 467,448 + +0.5 467,622 - +0.1 467,640 - ABZR88_RS02085 0.11 +0.2
Or see this region's nucleotide sequence