Experiment: Beta-Lactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS14320 and ABZR88_RS14325 are separated by 1 nucleotides ABZR88_RS14325 and ABZR88_RS14330 overlap by 25 nucleotides ABZR88_RS14330 and ABZR88_RS14335 are separated by 0 nucleotides ABZR88_RS14335 and ABZR88_RS14340 overlap by 7 nucleotides
ABZR88_RS14320: ABZR88_RS14320 - glycosyltransferase, at 3,554,172 to 3,555,083
_RS14320
ABZR88_RS14325: ABZR88_RS14325 - glycosyl transferase, at 3,555,085 to 3,556,011
_RS14325
ABZR88_RS14330: ABZR88_RS14330 - glycosyltransferase, at 3,555,987 to 3,556,787
_RS14330
ABZR88_RS14335: ABZR88_RS14335 - glycosyltransferase family 2 protein, at 3,556,788 to 3,557,738
_RS14335
ABZR88_RS14340: ABZR88_RS14340 - glycosyltransferase family 2 protein, at 3,557,732 to 3,558,712
_RS14340
Position (kb) 3555
3556
3557 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3555.100 kb on - strand at 3555.134 kb on + strand at 3555.222 kb on - strand, within ABZR88_RS14325 at 3555.280 kb on + strand, within ABZR88_RS14325 at 3555.453 kb on + strand, within ABZR88_RS14325 at 3555.461 kb on + strand, within ABZR88_RS14325 at 3555.462 kb on - strand, within ABZR88_RS14325 at 3555.533 kb on + strand, within ABZR88_RS14325 at 3555.534 kb on - strand, within ABZR88_RS14325 at 3555.643 kb on + strand, within ABZR88_RS14325 at 3555.644 kb on - strand, within ABZR88_RS14325 at 3555.714 kb on - strand, within ABZR88_RS14325 at 3555.723 kb on - strand, within ABZR88_RS14325 at 3555.892 kb on + strand, within ABZR88_RS14325 at 3555.893 kb on - strand, within ABZR88_RS14325 at 3555.923 kb on - strand at 3555.949 kb on + strand at 3556.101 kb on + strand, within ABZR88_RS14330 at 3556.108 kb on - strand, within ABZR88_RS14330 at 3556.217 kb on - strand, within ABZR88_RS14330 at 3556.280 kb on + strand, within ABZR88_RS14330 at 3556.280 kb on + strand, within ABZR88_RS14330 at 3556.370 kb on + strand, within ABZR88_RS14330 at 3556.420 kb on + strand, within ABZR88_RS14330 at 3556.547 kb on + strand, within ABZR88_RS14330 at 3556.674 kb on + strand, within ABZR88_RS14330 at 3556.674 kb on + strand, within ABZR88_RS14330 at 3556.861 kb on + strand at 3556.862 kb on - strand at 3556.889 kb on + strand, within ABZR88_RS14335 at 3556.889 kb on + strand, within ABZR88_RS14335 at 3556.890 kb on - strand, within ABZR88_RS14335 at 3556.936 kb on + strand, within ABZR88_RS14335 at 3556.937 kb on - strand, within ABZR88_RS14335 at 3556.954 kb on + strand, within ABZR88_RS14335 at 3556.954 kb on + strand, within ABZR88_RS14335 at 3557.123 kb on + strand, within ABZR88_RS14335 at 3557.162 kb on + strand, within ABZR88_RS14335 at 3557.227 kb on + strand, within ABZR88_RS14335 at 3557.235 kb on + strand, within ABZR88_RS14335 at 3557.242 kb on - strand, within ABZR88_RS14335 at 3557.409 kb on + strand, within ABZR88_RS14335 at 3557.522 kb on + strand, within ABZR88_RS14335 at 3557.578 kb on - strand, within ABZR88_RS14335 at 3557.728 kb on + strand at 3557.728 kb on + strand at 3557.762 kb on + strand at 3557.763 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose (C) remove 3,555,100 - -0.2 3,555,134 + +0.0 3,555,222 - ABZR88_RS14325 0.15 +0.1 3,555,280 + ABZR88_RS14325 0.21 +0.3 3,555,453 + ABZR88_RS14325 0.40 -0.1 3,555,461 + ABZR88_RS14325 0.41 +1.2 3,555,462 - ABZR88_RS14325 0.41 -1.1 3,555,533 + ABZR88_RS14325 0.48 -0.6 3,555,534 - ABZR88_RS14325 0.48 +0.0 3,555,643 + ABZR88_RS14325 0.60 +0.7 3,555,644 - ABZR88_RS14325 0.60 +0.3 3,555,714 - ABZR88_RS14325 0.68 -1.0 3,555,723 - ABZR88_RS14325 0.69 -0.2 3,555,892 + ABZR88_RS14325 0.87 +0.4 3,555,893 - ABZR88_RS14325 0.87 +0.2 3,555,923 - +0.1 3,555,949 + -0.1 3,556,101 + ABZR88_RS14330 0.14 +0.1 3,556,108 - ABZR88_RS14330 0.15 +0.1 3,556,217 - ABZR88_RS14330 0.29 -1.4 3,556,280 + ABZR88_RS14330 0.37 -0.4 3,556,280 + ABZR88_RS14330 0.37 +0.2 3,556,370 + ABZR88_RS14330 0.48 -0.2 3,556,420 + ABZR88_RS14330 0.54 +1.3 3,556,547 + ABZR88_RS14330 0.70 -2.1 3,556,674 + ABZR88_RS14330 0.86 +0.1 3,556,674 + ABZR88_RS14330 0.86 +0.1 3,556,861 + +0.3 3,556,862 - -0.2 3,556,889 + ABZR88_RS14335 0.11 -0.0 3,556,889 + ABZR88_RS14335 0.11 +0.6 3,556,890 - ABZR88_RS14335 0.11 -2.4 3,556,936 + ABZR88_RS14335 0.16 +1.1 3,556,937 - ABZR88_RS14335 0.16 -0.3 3,556,954 + ABZR88_RS14335 0.17 +0.1 3,556,954 + ABZR88_RS14335 0.17 +0.4 3,557,123 + ABZR88_RS14335 0.35 -0.0 3,557,162 + ABZR88_RS14335 0.39 +0.3 3,557,227 + ABZR88_RS14335 0.46 +0.1 3,557,235 + ABZR88_RS14335 0.47 +0.1 3,557,242 - ABZR88_RS14335 0.48 +0.2 3,557,409 + ABZR88_RS14335 0.65 -0.3 3,557,522 + ABZR88_RS14335 0.77 +2.5 3,557,578 - ABZR88_RS14335 0.83 +0.0 3,557,728 + -0.1 3,557,728 + +0.7 3,557,762 + -0.1 3,557,763 - +0.1
Or see this region's nucleotide sequence