Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS13185

Experiment: Beta-Lactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS13175 and ABZR88_RS13180 are separated by 98 nucleotidesABZR88_RS13180 and ABZR88_RS13185 are separated by 11 nucleotidesABZR88_RS13185 and ABZR88_RS13190 are separated by 14 nucleotidesABZR88_RS13190 and ABZR88_RS13195 are separated by 12 nucleotides ABZR88_RS13175: ABZR88_RS13175 - multidrug effflux MFS transporter, at 3,267,744 to 3,268,946 _RS13175 ABZR88_RS13180: ABZR88_RS13180 - DUF1080 domain-containing protein, at 3,269,045 to 3,269,824 _RS13180 ABZR88_RS13185: ABZR88_RS13185 - sugar phosphate isomerase/epimerase, at 3,269,836 to 3,270,708 _RS13185 ABZR88_RS13190: ABZR88_RS13190 - hydroxypyruvate isomerase family protein, at 3,270,723 to 3,271,610 _RS13190 ABZR88_RS13195: ABZR88_RS13195 - nucleoside permease, at 3,271,623 to 3,272,870 _RS13195 Position (kb) 3269 3270 3271Strain fitness (log2 ratio) -1 0 1at 3268.842 kb on - strandat 3268.878 kb on - strandat 3268.966 kb on + strandat 3269.012 kb on + strandat 3269.036 kb on + strandat 3269.146 kb on - strand, within ABZR88_RS13180at 3269.146 kb on - strand, within ABZR88_RS13180at 3269.186 kb on + strand, within ABZR88_RS13180at 3269.206 kb on + strand, within ABZR88_RS13180at 3269.290 kb on - strand, within ABZR88_RS13180at 3269.374 kb on - strand, within ABZR88_RS13180at 3269.392 kb on + strand, within ABZR88_RS13180at 3269.393 kb on - strand, within ABZR88_RS13180at 3269.507 kb on - strand, within ABZR88_RS13180at 3269.563 kb on + strand, within ABZR88_RS13180at 3269.924 kb on + strand, within ABZR88_RS13185at 3269.925 kb on - strand, within ABZR88_RS13185at 3269.960 kb on - strand, within ABZR88_RS13185at 3270.006 kb on + strand, within ABZR88_RS13185at 3270.107 kb on + strand, within ABZR88_RS13185at 3270.165 kb on - strand, within ABZR88_RS13185at 3270.212 kb on + strand, within ABZR88_RS13185at 3270.213 kb on - strand, within ABZR88_RS13185at 3270.333 kb on - strand, within ABZR88_RS13185at 3270.479 kb on - strand, within ABZR88_RS13185at 3270.597 kb on - strand, within ABZR88_RS13185at 3270.598 kb on + strand, within ABZR88_RS13185at 3270.599 kb on - strand, within ABZR88_RS13185at 3270.599 kb on - strand, within ABZR88_RS13185at 3270.802 kb on + strandat 3270.803 kb on - strandat 3270.822 kb on + strand, within ABZR88_RS13190at 3270.823 kb on - strand, within ABZR88_RS13190at 3270.823 kb on - strand, within ABZR88_RS13190at 3270.864 kb on - strand, within ABZR88_RS13190at 3270.916 kb on + strand, within ABZR88_RS13190at 3270.917 kb on - strand, within ABZR88_RS13190at 3270.926 kb on - strand, within ABZR88_RS13190at 3270.982 kb on + strand, within ABZR88_RS13190at 3271.083 kb on + strand, within ABZR88_RS13190at 3271.092 kb on - strand, within ABZR88_RS13190at 3271.095 kb on + strand, within ABZR88_RS13190at 3271.214 kb on + strand, within ABZR88_RS13190at 3271.214 kb on + strand, within ABZR88_RS13190at 3271.499 kb on + strand, within ABZR88_RS13190at 3271.509 kb on - strand, within ABZR88_RS13190at 3271.611 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose (C)
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3,268,842 - +0.3
3,268,878 - +0.0
3,268,966 + -0.2
3,269,012 + -0.5
3,269,036 + -1.2
3,269,146 - ABZR88_RS13180 0.13 +1.5
3,269,146 - ABZR88_RS13180 0.13 -0.1
3,269,186 + ABZR88_RS13180 0.18 -0.0
3,269,206 + ABZR88_RS13180 0.21 -0.4
3,269,290 - ABZR88_RS13180 0.31 +0.0
3,269,374 - ABZR88_RS13180 0.42 -1.1
3,269,392 + ABZR88_RS13180 0.44 -0.4
3,269,393 - ABZR88_RS13180 0.45 -0.6
3,269,507 - ABZR88_RS13180 0.59 -0.5
3,269,563 + ABZR88_RS13180 0.66 +0.9
3,269,924 + ABZR88_RS13185 0.10 -1.5
3,269,925 - ABZR88_RS13185 0.10 -1.6
3,269,960 - ABZR88_RS13185 0.14 +0.2
3,270,006 + ABZR88_RS13185 0.19 -1.3
3,270,107 + ABZR88_RS13185 0.31 -1.0
3,270,165 - ABZR88_RS13185 0.38 -0.7
3,270,212 + ABZR88_RS13185 0.43 -1.2
3,270,213 - ABZR88_RS13185 0.43 -0.8
3,270,333 - ABZR88_RS13185 0.57 -1.7
3,270,479 - ABZR88_RS13185 0.74 -0.3
3,270,597 - ABZR88_RS13185 0.87 -1.3
3,270,598 + ABZR88_RS13185 0.87 -0.3
3,270,599 - ABZR88_RS13185 0.87 -1.0
3,270,599 - ABZR88_RS13185 0.87 -0.5
3,270,802 + -1.0
3,270,803 - -0.9
3,270,822 + ABZR88_RS13190 0.11 -0.7
3,270,823 - ABZR88_RS13190 0.11 -0.3
3,270,823 - ABZR88_RS13190 0.11 -0.4
3,270,864 - ABZR88_RS13190 0.16 -1.1
3,270,916 + ABZR88_RS13190 0.22 -0.9
3,270,917 - ABZR88_RS13190 0.22 -1.1
3,270,926 - ABZR88_RS13190 0.23 -0.3
3,270,982 + ABZR88_RS13190 0.29 -1.0
3,271,083 + ABZR88_RS13190 0.41 -1.1
3,271,092 - ABZR88_RS13190 0.42 -1.0
3,271,095 + ABZR88_RS13190 0.42 -1.6
3,271,214 + ABZR88_RS13190 0.55 -1.0
3,271,214 + ABZR88_RS13190 0.55 -0.7
3,271,499 + ABZR88_RS13190 0.87 -1.5
3,271,509 - ABZR88_RS13190 0.89 -0.7
3,271,611 - +0.2

Or see this region's nucleotide sequence