Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS08065

Experiment: Beta-Lactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS08060 and ABZR88_RS08065 are separated by 74 nucleotidesABZR88_RS08065 and ABZR88_RS08070 are separated by 31 nucleotides ABZR88_RS08060: ABZR88_RS08060 - TIM-barrel domain-containing protein, at 2,001,133 to 2,003,283 _RS08060 ABZR88_RS08065: ABZR88_RS08065 - CHRD domain-containing protein, at 2,003,358 to 2,003,855 _RS08065 ABZR88_RS08070: ABZR88_RS08070 - RagB/SusD family nutrient uptake outer membrane protein, at 2,003,887 to 2,005,692 _RS08070 Position (kb) 2003 2004Strain fitness (log2 ratio) -1 0 1 2at 2002.436 kb on - strand, within ABZR88_RS08060at 2002.444 kb on + strand, within ABZR88_RS08060at 2002.448 kb on - strand, within ABZR88_RS08060at 2002.635 kb on + strand, within ABZR88_RS08060at 2002.636 kb on - strand, within ABZR88_RS08060at 2003.025 kb on + strand, within ABZR88_RS08060at 2003.036 kb on + strand, within ABZR88_RS08060at 2003.156 kb on - strandat 2003.156 kb on - strandat 2003.213 kb on + strandat 2003.266 kb on - strandat 2003.425 kb on + strand, within ABZR88_RS08065at 2003.502 kb on - strand, within ABZR88_RS08065at 2003.666 kb on - strand, within ABZR88_RS08065at 2003.749 kb on - strand, within ABZR88_RS08065at 2003.856 kb on - strandat 2004.005 kb on + strandat 2004.005 kb on + strandat 2004.005 kb on + strandat 2004.006 kb on - strandat 2004.168 kb on + strand, within ABZR88_RS08070at 2004.168 kb on + strand, within ABZR88_RS08070at 2004.189 kb on + strand, within ABZR88_RS08070at 2004.189 kb on + strand, within ABZR88_RS08070at 2004.189 kb on + strand, within ABZR88_RS08070at 2004.189 kb on + strand, within ABZR88_RS08070at 2004.246 kb on - strand, within ABZR88_RS08070at 2004.267 kb on + strand, within ABZR88_RS08070at 2004.280 kb on - strand, within ABZR88_RS08070at 2004.386 kb on + strand, within ABZR88_RS08070at 2004.389 kb on + strand, within ABZR88_RS08070at 2004.575 kb on + strand, within ABZR88_RS08070at 2004.575 kb on + strand, within ABZR88_RS08070at 2004.692 kb on + strand, within ABZR88_RS08070at 2004.693 kb on - strand, within ABZR88_RS08070at 2004.844 kb on - strand, within ABZR88_RS08070

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose (C)
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2,002,436 - ABZR88_RS08060 0.61 -0.3
2,002,444 + ABZR88_RS08060 0.61 +0.0
2,002,448 - ABZR88_RS08060 0.61 -0.2
2,002,635 + ABZR88_RS08060 0.70 +0.0
2,002,636 - ABZR88_RS08060 0.70 -0.3
2,003,025 + ABZR88_RS08060 0.88 -0.2
2,003,036 + ABZR88_RS08060 0.88 +0.2
2,003,156 - -0.0
2,003,156 - +0.4
2,003,213 + -0.4
2,003,266 - -0.1
2,003,425 + ABZR88_RS08065 0.13 -0.4
2,003,502 - ABZR88_RS08065 0.29 -0.2
2,003,666 - ABZR88_RS08065 0.62 -0.0
2,003,749 - ABZR88_RS08065 0.79 -0.7
2,003,856 - -0.2
2,004,005 + +0.0
2,004,005 + -0.0
2,004,005 + -0.7
2,004,006 - +0.1
2,004,168 + ABZR88_RS08070 0.16 +1.1
2,004,168 + ABZR88_RS08070 0.16 -0.9
2,004,189 + ABZR88_RS08070 0.17 -0.1
2,004,189 + ABZR88_RS08070 0.17 +0.6
2,004,189 + ABZR88_RS08070 0.17 +1.8
2,004,189 + ABZR88_RS08070 0.17 -0.4
2,004,246 - ABZR88_RS08070 0.20 +0.1
2,004,267 + ABZR88_RS08070 0.21 -0.4
2,004,280 - ABZR88_RS08070 0.22 +0.4
2,004,386 + ABZR88_RS08070 0.28 +2.4
2,004,389 + ABZR88_RS08070 0.28 -0.1
2,004,575 + ABZR88_RS08070 0.38 +0.6
2,004,575 + ABZR88_RS08070 0.38 -0.2
2,004,692 + ABZR88_RS08070 0.45 -0.2
2,004,693 - ABZR88_RS08070 0.45 +0.1
2,004,844 - ABZR88_RS08070 0.53 -0.1

Or see this region's nucleotide sequence