Experiment: Beta-Lactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS08060 and ABZR88_RS08065 are separated by 74 nucleotides ABZR88_RS08065 and ABZR88_RS08070 are separated by 31 nucleotides
ABZR88_RS08060: ABZR88_RS08060 - TIM-barrel domain-containing protein, at 2,001,133 to 2,003,283
_RS08060
ABZR88_RS08065: ABZR88_RS08065 - CHRD domain-containing protein, at 2,003,358 to 2,003,855
_RS08065
ABZR88_RS08070: ABZR88_RS08070 - RagB/SusD family nutrient uptake outer membrane protein, at 2,003,887 to 2,005,692
_RS08070
Position (kb)
2003
2004 Strain fitness (log2 ratio)
-1
0
1
2 at 2002.436 kb on - strand, within ABZR88_RS08060 at 2002.444 kb on + strand, within ABZR88_RS08060 at 2002.448 kb on - strand, within ABZR88_RS08060 at 2002.635 kb on + strand, within ABZR88_RS08060 at 2002.636 kb on - strand, within ABZR88_RS08060 at 2003.025 kb on + strand, within ABZR88_RS08060 at 2003.036 kb on + strand, within ABZR88_RS08060 at 2003.156 kb on - strand at 2003.156 kb on - strand at 2003.213 kb on + strand at 2003.266 kb on - strand at 2003.425 kb on + strand, within ABZR88_RS08065 at 2003.502 kb on - strand, within ABZR88_RS08065 at 2003.666 kb on - strand, within ABZR88_RS08065 at 2003.749 kb on - strand, within ABZR88_RS08065 at 2003.856 kb on - strand at 2004.005 kb on + strand at 2004.005 kb on + strand at 2004.005 kb on + strand at 2004.006 kb on - strand at 2004.168 kb on + strand, within ABZR88_RS08070 at 2004.168 kb on + strand, within ABZR88_RS08070 at 2004.189 kb on + strand, within ABZR88_RS08070 at 2004.189 kb on + strand, within ABZR88_RS08070 at 2004.189 kb on + strand, within ABZR88_RS08070 at 2004.189 kb on + strand, within ABZR88_RS08070 at 2004.246 kb on - strand, within ABZR88_RS08070 at 2004.267 kb on + strand, within ABZR88_RS08070 at 2004.280 kb on - strand, within ABZR88_RS08070 at 2004.386 kb on + strand, within ABZR88_RS08070 at 2004.389 kb on + strand, within ABZR88_RS08070 at 2004.575 kb on + strand, within ABZR88_RS08070 at 2004.575 kb on + strand, within ABZR88_RS08070 at 2004.692 kb on + strand, within ABZR88_RS08070 at 2004.693 kb on - strand, within ABZR88_RS08070 at 2004.844 kb on - strand, within ABZR88_RS08070
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose (C) remove 2,002,436 - ABZR88_RS08060 0.61 -0.3 2,002,444 + ABZR88_RS08060 0.61 +0.0 2,002,448 - ABZR88_RS08060 0.61 -0.2 2,002,635 + ABZR88_RS08060 0.70 +0.0 2,002,636 - ABZR88_RS08060 0.70 -0.3 2,003,025 + ABZR88_RS08060 0.88 -0.2 2,003,036 + ABZR88_RS08060 0.88 +0.2 2,003,156 - -0.0 2,003,156 - +0.4 2,003,213 + -0.4 2,003,266 - -0.1 2,003,425 + ABZR88_RS08065 0.13 -0.4 2,003,502 - ABZR88_RS08065 0.29 -0.2 2,003,666 - ABZR88_RS08065 0.62 -0.0 2,003,749 - ABZR88_RS08065 0.79 -0.7 2,003,856 - -0.2 2,004,005 + +0.0 2,004,005 + -0.0 2,004,005 + -0.7 2,004,006 - +0.1 2,004,168 + ABZR88_RS08070 0.16 +1.1 2,004,168 + ABZR88_RS08070 0.16 -0.9 2,004,189 + ABZR88_RS08070 0.17 -0.1 2,004,189 + ABZR88_RS08070 0.17 +0.6 2,004,189 + ABZR88_RS08070 0.17 +1.8 2,004,189 + ABZR88_RS08070 0.17 -0.4 2,004,246 - ABZR88_RS08070 0.20 +0.1 2,004,267 + ABZR88_RS08070 0.21 -0.4 2,004,280 - ABZR88_RS08070 0.22 +0.4 2,004,386 + ABZR88_RS08070 0.28 +2.4 2,004,389 + ABZR88_RS08070 0.28 -0.1 2,004,575 + ABZR88_RS08070 0.38 +0.6 2,004,575 + ABZR88_RS08070 0.38 -0.2 2,004,692 + ABZR88_RS08070 0.45 -0.2 2,004,693 - ABZR88_RS08070 0.45 +0.1 2,004,844 - ABZR88_RS08070 0.53 -0.1
Or see this region's nucleotide sequence