Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS16830 and ABZR88_RS16835 are separated by 192 nucleotides ABZR88_RS16835 and ABZR88_RS16840 are separated by 29 nucleotides ABZR88_RS16840 and ABZR88_RS16845 are separated by 171 nucleotides
ABZR88_RS16830: ABZR88_RS16830 - toprim domain-containing protein, at 4,129,624 to 4,130,556
_RS16830
ABZR88_RS16835: ABZR88_RS16835 - plasmid mobilization relaxosome protein MobC, at 4,130,749 to 4,131,141
_RS16835
ABZR88_RS16840: ABZR88_RS16840 - relaxase/mobilization nuclease domain-containing protein, at 4,131,171 to 4,132,421
_RS16840
ABZR88_RS16845: ABZR88_RS16845 - conjugal transfer protein MobC, at 4,132,593 to 4,134,575
_RS16845
Position (kb)
4131
4132
4133 Strain fitness (log2 ratio)
-2
-1
0
1 at 4130.241 kb on + strand, within ABZR88_RS16830 at 4130.373 kb on - strand, within ABZR88_RS16830 at 4130.622 kb on + strand at 4130.703 kb on + strand at 4130.704 kb on - strand at 4131.330 kb on - strand, within ABZR88_RS16840 at 4131.433 kb on + strand, within ABZR88_RS16840 at 4131.433 kb on + strand, within ABZR88_RS16840 at 4131.958 kb on + strand, within ABZR88_RS16840 at 4132.089 kb on + strand, within ABZR88_RS16840 at 4132.089 kb on + strand, within ABZR88_RS16840 at 4132.090 kb on - strand, within ABZR88_RS16840 at 4132.143 kb on + strand, within ABZR88_RS16840 at 4132.181 kb on - strand, within ABZR88_RS16840 at 4132.451 kb on - strand at 4132.482 kb on + strand at 4132.657 kb on + strand at 4132.742 kb on - strand at 4132.781 kb on + strand at 4132.886 kb on - strand, within ABZR88_RS16845 at 4132.966 kb on - strand, within ABZR88_RS16845 at 4132.967 kb on + strand, within ABZR88_RS16845 at 4132.968 kb on - strand, within ABZR88_RS16845 at 4132.973 kb on + strand, within ABZR88_RS16845 at 4132.974 kb on - strand, within ABZR88_RS16845 at 4133.136 kb on + strand, within ABZR88_RS16845 at 4133.137 kb on - strand, within ABZR88_RS16845 at 4133.237 kb on + strand, within ABZR88_RS16845 at 4133.292 kb on + strand, within ABZR88_RS16845 at 4133.358 kb on + strand, within ABZR88_RS16845
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 4,130,241 + ABZR88_RS16830 0.66 +0.2 4,130,373 - ABZR88_RS16830 0.80 +0.4 4,130,622 + -0.4 4,130,703 + -0.0 4,130,704 - +0.1 4,131,330 - ABZR88_RS16840 0.13 -2.2 4,131,433 + ABZR88_RS16840 0.21 +0.1 4,131,433 + ABZR88_RS16840 0.21 +0.2 4,131,958 + ABZR88_RS16840 0.63 +0.2 4,132,089 + ABZR88_RS16840 0.73 +0.1 4,132,089 + ABZR88_RS16840 0.73 -0.3 4,132,090 - ABZR88_RS16840 0.73 -0.0 4,132,143 + ABZR88_RS16840 0.78 -1.1 4,132,181 - ABZR88_RS16840 0.81 +0.1 4,132,451 - +0.7 4,132,482 + -1.0 4,132,657 + -0.3 4,132,742 - +1.5 4,132,781 + +0.4 4,132,886 - ABZR88_RS16845 0.15 +0.3 4,132,966 - ABZR88_RS16845 0.19 +0.4 4,132,967 + ABZR88_RS16845 0.19 +0.8 4,132,968 - ABZR88_RS16845 0.19 +0.1 4,132,973 + ABZR88_RS16845 0.19 -1.2 4,132,974 - ABZR88_RS16845 0.19 -0.3 4,133,136 + ABZR88_RS16845 0.27 +0.4 4,133,137 - ABZR88_RS16845 0.27 +0.0 4,133,237 + ABZR88_RS16845 0.32 +0.8 4,133,292 + ABZR88_RS16845 0.35 +1.4 4,133,358 + ABZR88_RS16845 0.39 -0.3
Or see this region's nucleotide sequence