Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS16305 and ABZR88_RS16310 overlap by 4 nucleotides ABZR88_RS16310 and ABZR88_RS16315 are separated by 109 nucleotides ABZR88_RS16315 and ABZR88_RS16320 are separated by 114 nucleotides
ABZR88_RS16305: ABZR88_RS16305 - outer membrane beta-barrel protein, at 4,011,098 to 4,011,808
_RS16305
ABZR88_RS16310: ABZR88_RS16310 - MmcQ/YjbR family DNA-binding protein, at 4,011,805 to 4,012,161
_RS16310
ABZR88_RS16315: ABZR88_RS16315 - rhomboid family intramembrane serine protease, at 4,012,271 to 4,012,879
_RS16315
ABZR88_RS16320: ABZR88_RS16320 - hypothetical protein, at 4,012,994 to 4,014,400
_RS16320
Position (kb)
4012
4013 Strain fitness (log2 ratio)
-1
0
1
2 at 4011.282 kb on + strand, within ABZR88_RS16305 at 4011.311 kb on - strand, within ABZR88_RS16305 at 4011.438 kb on + strand, within ABZR88_RS16305 at 4011.494 kb on - strand, within ABZR88_RS16305 at 4011.497 kb on - strand, within ABZR88_RS16305 at 4011.534 kb on - strand, within ABZR88_RS16305 at 4011.661 kb on + strand, within ABZR88_RS16305 at 4011.662 kb on - strand, within ABZR88_RS16305 at 4011.687 kb on - strand, within ABZR88_RS16305 at 4011.796 kb on + strand at 4011.927 kb on - strand, within ABZR88_RS16310 at 4012.045 kb on + strand, within ABZR88_RS16310 at 4012.133 kb on + strand at 4012.239 kb on + strand at 4012.245 kb on - strand at 4012.265 kb on - strand at 4012.269 kb on - strand at 4012.375 kb on + strand, within ABZR88_RS16315 at 4012.424 kb on - strand, within ABZR88_RS16315 at 4012.512 kb on - strand, within ABZR88_RS16315 at 4012.541 kb on + strand, within ABZR88_RS16315 at 4012.632 kb on + strand, within ABZR88_RS16315 at 4012.632 kb on + strand, within ABZR88_RS16315 at 4012.632 kb on + strand, within ABZR88_RS16315 at 4012.682 kb on + strand, within ABZR88_RS16315 at 4012.688 kb on + strand, within ABZR88_RS16315 at 4012.885 kb on + strand at 4012.942 kb on + strand at 4013.056 kb on + strand at 4013.095 kb on + strand at 4013.230 kb on + strand, within ABZR88_RS16320 at 4013.230 kb on + strand, within ABZR88_RS16320 at 4013.324 kb on + strand, within ABZR88_RS16320 at 4013.355 kb on - strand, within ABZR88_RS16320 at 4013.396 kb on - strand, within ABZR88_RS16320 at 4013.405 kb on - strand, within ABZR88_RS16320 at 4013.406 kb on + strand, within ABZR88_RS16320 at 4013.444 kb on + strand, within ABZR88_RS16320 at 4013.797 kb on + strand, within ABZR88_RS16320 at 4013.820 kb on + strand, within ABZR88_RS16320
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 4,011,282 + ABZR88_RS16305 0.26 +0.1 4,011,311 - ABZR88_RS16305 0.30 +0.4 4,011,438 + ABZR88_RS16305 0.48 -0.3 4,011,494 - ABZR88_RS16305 0.56 +0.9 4,011,497 - ABZR88_RS16305 0.56 +0.5 4,011,534 - ABZR88_RS16305 0.61 +2.6 4,011,661 + ABZR88_RS16305 0.79 -0.1 4,011,662 - ABZR88_RS16305 0.79 +0.1 4,011,687 - ABZR88_RS16305 0.83 +0.1 4,011,796 + -0.0 4,011,927 - ABZR88_RS16310 0.34 +0.8 4,012,045 + ABZR88_RS16310 0.67 -1.7 4,012,133 + -1.4 4,012,239 + +0.1 4,012,245 - +0.4 4,012,265 - -0.0 4,012,269 - -0.4 4,012,375 + ABZR88_RS16315 0.17 +0.2 4,012,424 - ABZR88_RS16315 0.25 -0.1 4,012,512 - ABZR88_RS16315 0.40 +0.7 4,012,541 + ABZR88_RS16315 0.44 +0.0 4,012,632 + ABZR88_RS16315 0.59 +0.1 4,012,632 + ABZR88_RS16315 0.59 +0.0 4,012,632 + ABZR88_RS16315 0.59 -0.1 4,012,682 + ABZR88_RS16315 0.67 +0.0 4,012,688 + ABZR88_RS16315 0.68 +0.0 4,012,885 + -0.7 4,012,942 + +0.0 4,013,056 + -0.6 4,013,095 + +0.9 4,013,230 + ABZR88_RS16320 0.17 -0.8 4,013,230 + ABZR88_RS16320 0.17 +0.2 4,013,324 + ABZR88_RS16320 0.23 +0.2 4,013,355 - ABZR88_RS16320 0.26 -0.2 4,013,396 - ABZR88_RS16320 0.29 -0.7 4,013,405 - ABZR88_RS16320 0.29 -0.0 4,013,406 + ABZR88_RS16320 0.29 -0.2 4,013,444 + ABZR88_RS16320 0.32 -0.1 4,013,797 + ABZR88_RS16320 0.57 -0.3 4,013,820 + ABZR88_RS16320 0.59 -0.5
Or see this region's nucleotide sequence