Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS16315

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS16305 and ABZR88_RS16310 overlap by 4 nucleotidesABZR88_RS16310 and ABZR88_RS16315 are separated by 109 nucleotidesABZR88_RS16315 and ABZR88_RS16320 are separated by 114 nucleotides ABZR88_RS16305: ABZR88_RS16305 - outer membrane beta-barrel protein, at 4,011,098 to 4,011,808 _RS16305 ABZR88_RS16310: ABZR88_RS16310 - MmcQ/YjbR family DNA-binding protein, at 4,011,805 to 4,012,161 _RS16310 ABZR88_RS16315: ABZR88_RS16315 - rhomboid family intramembrane serine protease, at 4,012,271 to 4,012,879 _RS16315 ABZR88_RS16320: ABZR88_RS16320 - hypothetical protein, at 4,012,994 to 4,014,400 _RS16320 Position (kb) 4012 4013Strain fitness (log2 ratio) -1 0 1 2at 4011.282 kb on + strand, within ABZR88_RS16305at 4011.311 kb on - strand, within ABZR88_RS16305at 4011.438 kb on + strand, within ABZR88_RS16305at 4011.494 kb on - strand, within ABZR88_RS16305at 4011.497 kb on - strand, within ABZR88_RS16305at 4011.534 kb on - strand, within ABZR88_RS16305at 4011.661 kb on + strand, within ABZR88_RS16305at 4011.662 kb on - strand, within ABZR88_RS16305at 4011.687 kb on - strand, within ABZR88_RS16305at 4011.796 kb on + strandat 4011.927 kb on - strand, within ABZR88_RS16310at 4012.045 kb on + strand, within ABZR88_RS16310at 4012.133 kb on + strandat 4012.239 kb on + strandat 4012.245 kb on - strandat 4012.265 kb on - strandat 4012.269 kb on - strandat 4012.375 kb on + strand, within ABZR88_RS16315at 4012.424 kb on - strand, within ABZR88_RS16315at 4012.512 kb on - strand, within ABZR88_RS16315at 4012.541 kb on + strand, within ABZR88_RS16315at 4012.632 kb on + strand, within ABZR88_RS16315at 4012.632 kb on + strand, within ABZR88_RS16315at 4012.632 kb on + strand, within ABZR88_RS16315at 4012.682 kb on + strand, within ABZR88_RS16315at 4012.688 kb on + strand, within ABZR88_RS16315at 4012.885 kb on + strandat 4012.942 kb on + strandat 4013.056 kb on + strandat 4013.095 kb on + strandat 4013.230 kb on + strand, within ABZR88_RS16320at 4013.230 kb on + strand, within ABZR88_RS16320at 4013.324 kb on + strand, within ABZR88_RS16320at 4013.355 kb on - strand, within ABZR88_RS16320at 4013.396 kb on - strand, within ABZR88_RS16320at 4013.405 kb on - strand, within ABZR88_RS16320at 4013.406 kb on + strand, within ABZR88_RS16320at 4013.444 kb on + strand, within ABZR88_RS16320at 4013.797 kb on + strand, within ABZR88_RS16320at 4013.820 kb on + strand, within ABZR88_RS16320

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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4,011,282 + ABZR88_RS16305 0.26 +0.1
4,011,311 - ABZR88_RS16305 0.30 +0.4
4,011,438 + ABZR88_RS16305 0.48 -0.3
4,011,494 - ABZR88_RS16305 0.56 +0.9
4,011,497 - ABZR88_RS16305 0.56 +0.5
4,011,534 - ABZR88_RS16305 0.61 +2.6
4,011,661 + ABZR88_RS16305 0.79 -0.1
4,011,662 - ABZR88_RS16305 0.79 +0.1
4,011,687 - ABZR88_RS16305 0.83 +0.1
4,011,796 + -0.0
4,011,927 - ABZR88_RS16310 0.34 +0.8
4,012,045 + ABZR88_RS16310 0.67 -1.7
4,012,133 + -1.4
4,012,239 + +0.1
4,012,245 - +0.4
4,012,265 - -0.0
4,012,269 - -0.4
4,012,375 + ABZR88_RS16315 0.17 +0.2
4,012,424 - ABZR88_RS16315 0.25 -0.1
4,012,512 - ABZR88_RS16315 0.40 +0.7
4,012,541 + ABZR88_RS16315 0.44 +0.0
4,012,632 + ABZR88_RS16315 0.59 +0.1
4,012,632 + ABZR88_RS16315 0.59 +0.0
4,012,632 + ABZR88_RS16315 0.59 -0.1
4,012,682 + ABZR88_RS16315 0.67 +0.0
4,012,688 + ABZR88_RS16315 0.68 +0.0
4,012,885 + -0.7
4,012,942 + +0.0
4,013,056 + -0.6
4,013,095 + +0.9
4,013,230 + ABZR88_RS16320 0.17 -0.8
4,013,230 + ABZR88_RS16320 0.17 +0.2
4,013,324 + ABZR88_RS16320 0.23 +0.2
4,013,355 - ABZR88_RS16320 0.26 -0.2
4,013,396 - ABZR88_RS16320 0.29 -0.7
4,013,405 - ABZR88_RS16320 0.29 -0.0
4,013,406 + ABZR88_RS16320 0.29 -0.2
4,013,444 + ABZR88_RS16320 0.32 -0.1
4,013,797 + ABZR88_RS16320 0.57 -0.3
4,013,820 + ABZR88_RS16320 0.59 -0.5

Or see this region's nucleotide sequence