Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS12895 and ABZR88_RS12900 are separated by 233 nucleotides ABZR88_RS12900 and ABZR88_RS12905 are separated by 146 nucleotides ABZR88_RS12905 and ABZR88_RS12910 are separated by 22 nucleotides
ABZR88_RS12895: ABZR88_RS12895 - FecR family protein, at 3,169,009 to 3,169,878
_RS12895
ABZR88_RS12900: ABZR88_RS12900 - RNA polymerase sigma factor, at 3,170,112 to 3,170,657
_RS12900
ABZR88_RS12905: ABZR88_RS12905 - fasciclin domain-containing protein, at 3,170,804 to 3,171,484
_RS12905
ABZR88_RS12910: ABZR88_RS12910 - RagB/SusD family nutrient uptake outer membrane protein, at 3,171,507 to 3,172,955
_RS12910
Position (kb)
3170
3171
3172 Strain fitness (log2 ratio)
-1
0
1
2 at 3169.809 kb on + strand at 3169.911 kb on + strand at 3169.913 kb on + strand at 3170.061 kb on + strand at 3170.402 kb on - strand, within ABZR88_RS12900 at 3170.492 kb on + strand, within ABZR88_RS12900 at 3170.493 kb on - strand, within ABZR88_RS12900 at 3170.725 kb on + strand at 3170.732 kb on - strand at 3170.741 kb on + strand at 3170.792 kb on + strand at 3170.843 kb on + strand at 3170.844 kb on - strand at 3170.865 kb on - strand at 3170.890 kb on - strand, within ABZR88_RS12905 at 3171.015 kb on - strand, within ABZR88_RS12905 at 3171.029 kb on - strand, within ABZR88_RS12905 at 3171.062 kb on - strand, within ABZR88_RS12905 at 3171.142 kb on + strand, within ABZR88_RS12905 at 3171.248 kb on + strand, within ABZR88_RS12905 at 3171.249 kb on - strand, within ABZR88_RS12905 at 3171.338 kb on + strand, within ABZR88_RS12905 at 3171.339 kb on - strand, within ABZR88_RS12905 at 3171.341 kb on - strand, within ABZR88_RS12905 at 3171.352 kb on + strand, within ABZR88_RS12905 at 3171.381 kb on + strand, within ABZR88_RS12905 at 3171.475 kb on + strand at 3171.897 kb on - strand, within ABZR88_RS12910 at 3171.930 kb on - strand, within ABZR88_RS12910 at 3171.968 kb on + strand, within ABZR88_RS12910 at 3172.046 kb on + strand, within ABZR88_RS12910 at 3172.064 kb on + strand, within ABZR88_RS12910 at 3172.067 kb on - strand, within ABZR88_RS12910 at 3172.089 kb on + strand, within ABZR88_RS12910 at 3172.268 kb on + strand, within ABZR88_RS12910 at 3172.268 kb on + strand, within ABZR88_RS12910 at 3172.269 kb on - strand, within ABZR88_RS12910 at 3172.312 kb on + strand, within ABZR88_RS12910 at 3172.312 kb on + strand, within ABZR88_RS12910 at 3172.313 kb on - strand, within ABZR88_RS12910 at 3172.374 kb on - strand, within ABZR88_RS12910 at 3172.391 kb on - strand, within ABZR88_RS12910
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 3,169,809 + -0.0 3,169,911 + -0.1 3,169,913 + -0.1 3,170,061 + +0.2 3,170,402 - ABZR88_RS12900 0.53 -0.2 3,170,492 + ABZR88_RS12900 0.70 +0.4 3,170,493 - ABZR88_RS12900 0.70 +0.8 3,170,725 + +0.3 3,170,732 - -0.5 3,170,741 + +1.2 3,170,792 + +0.0 3,170,843 + +0.5 3,170,844 - -0.1 3,170,865 - -0.9 3,170,890 - ABZR88_RS12905 0.13 -0.5 3,171,015 - ABZR88_RS12905 0.31 -0.2 3,171,029 - ABZR88_RS12905 0.33 -0.1 3,171,062 - ABZR88_RS12905 0.38 -0.5 3,171,142 + ABZR88_RS12905 0.50 -0.0 3,171,248 + ABZR88_RS12905 0.65 +1.0 3,171,249 - ABZR88_RS12905 0.65 -0.2 3,171,338 + ABZR88_RS12905 0.78 -0.2 3,171,339 - ABZR88_RS12905 0.79 -0.3 3,171,341 - ABZR88_RS12905 0.79 -1.1 3,171,352 + ABZR88_RS12905 0.80 +0.3 3,171,381 + ABZR88_RS12905 0.85 -0.6 3,171,475 + -0.3 3,171,897 - ABZR88_RS12910 0.27 -0.4 3,171,930 - ABZR88_RS12910 0.29 +0.2 3,171,968 + ABZR88_RS12910 0.32 +2.2 3,172,046 + ABZR88_RS12910 0.37 -0.4 3,172,064 + ABZR88_RS12910 0.38 -1.0 3,172,067 - ABZR88_RS12910 0.39 -0.0 3,172,089 + ABZR88_RS12910 0.40 +0.1 3,172,268 + ABZR88_RS12910 0.53 +0.1 3,172,268 + ABZR88_RS12910 0.53 -0.3 3,172,269 - ABZR88_RS12910 0.53 +0.3 3,172,312 + ABZR88_RS12910 0.56 +0.1 3,172,312 + ABZR88_RS12910 0.56 -0.1 3,172,313 - ABZR88_RS12910 0.56 -0.1 3,172,374 - ABZR88_RS12910 0.60 +0.1 3,172,391 - ABZR88_RS12910 0.61 -0.1
Or see this region's nucleotide sequence