Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS12905

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS12895 and ABZR88_RS12900 are separated by 233 nucleotidesABZR88_RS12900 and ABZR88_RS12905 are separated by 146 nucleotidesABZR88_RS12905 and ABZR88_RS12910 are separated by 22 nucleotides ABZR88_RS12895: ABZR88_RS12895 - FecR family protein, at 3,169,009 to 3,169,878 _RS12895 ABZR88_RS12900: ABZR88_RS12900 - RNA polymerase sigma factor, at 3,170,112 to 3,170,657 _RS12900 ABZR88_RS12905: ABZR88_RS12905 - fasciclin domain-containing protein, at 3,170,804 to 3,171,484 _RS12905 ABZR88_RS12910: ABZR88_RS12910 - RagB/SusD family nutrient uptake outer membrane protein, at 3,171,507 to 3,172,955 _RS12910 Position (kb) 3170 3171 3172Strain fitness (log2 ratio) -1 0 1 2at 3169.809 kb on + strandat 3169.911 kb on + strandat 3169.913 kb on + strandat 3170.061 kb on + strandat 3170.402 kb on - strand, within ABZR88_RS12900at 3170.492 kb on + strand, within ABZR88_RS12900at 3170.493 kb on - strand, within ABZR88_RS12900at 3170.725 kb on + strandat 3170.732 kb on - strandat 3170.741 kb on + strandat 3170.792 kb on + strandat 3170.843 kb on + strandat 3170.844 kb on - strandat 3170.865 kb on - strandat 3170.890 kb on - strand, within ABZR88_RS12905at 3171.015 kb on - strand, within ABZR88_RS12905at 3171.029 kb on - strand, within ABZR88_RS12905at 3171.062 kb on - strand, within ABZR88_RS12905at 3171.142 kb on + strand, within ABZR88_RS12905at 3171.248 kb on + strand, within ABZR88_RS12905at 3171.249 kb on - strand, within ABZR88_RS12905at 3171.338 kb on + strand, within ABZR88_RS12905at 3171.339 kb on - strand, within ABZR88_RS12905at 3171.341 kb on - strand, within ABZR88_RS12905at 3171.352 kb on + strand, within ABZR88_RS12905at 3171.381 kb on + strand, within ABZR88_RS12905at 3171.475 kb on + strandat 3171.897 kb on - strand, within ABZR88_RS12910at 3171.930 kb on - strand, within ABZR88_RS12910at 3171.968 kb on + strand, within ABZR88_RS12910at 3172.046 kb on + strand, within ABZR88_RS12910at 3172.064 kb on + strand, within ABZR88_RS12910at 3172.067 kb on - strand, within ABZR88_RS12910at 3172.089 kb on + strand, within ABZR88_RS12910at 3172.268 kb on + strand, within ABZR88_RS12910at 3172.268 kb on + strand, within ABZR88_RS12910at 3172.269 kb on - strand, within ABZR88_RS12910at 3172.312 kb on + strand, within ABZR88_RS12910at 3172.312 kb on + strand, within ABZR88_RS12910at 3172.313 kb on - strand, within ABZR88_RS12910at 3172.374 kb on - strand, within ABZR88_RS12910at 3172.391 kb on - strand, within ABZR88_RS12910

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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3,169,809 + -0.0
3,169,911 + -0.1
3,169,913 + -0.1
3,170,061 + +0.2
3,170,402 - ABZR88_RS12900 0.53 -0.2
3,170,492 + ABZR88_RS12900 0.70 +0.4
3,170,493 - ABZR88_RS12900 0.70 +0.8
3,170,725 + +0.3
3,170,732 - -0.5
3,170,741 + +1.2
3,170,792 + +0.0
3,170,843 + +0.5
3,170,844 - -0.1
3,170,865 - -0.9
3,170,890 - ABZR88_RS12905 0.13 -0.5
3,171,015 - ABZR88_RS12905 0.31 -0.2
3,171,029 - ABZR88_RS12905 0.33 -0.1
3,171,062 - ABZR88_RS12905 0.38 -0.5
3,171,142 + ABZR88_RS12905 0.50 -0.0
3,171,248 + ABZR88_RS12905 0.65 +1.0
3,171,249 - ABZR88_RS12905 0.65 -0.2
3,171,338 + ABZR88_RS12905 0.78 -0.2
3,171,339 - ABZR88_RS12905 0.79 -0.3
3,171,341 - ABZR88_RS12905 0.79 -1.1
3,171,352 + ABZR88_RS12905 0.80 +0.3
3,171,381 + ABZR88_RS12905 0.85 -0.6
3,171,475 + -0.3
3,171,897 - ABZR88_RS12910 0.27 -0.4
3,171,930 - ABZR88_RS12910 0.29 +0.2
3,171,968 + ABZR88_RS12910 0.32 +2.2
3,172,046 + ABZR88_RS12910 0.37 -0.4
3,172,064 + ABZR88_RS12910 0.38 -1.0
3,172,067 - ABZR88_RS12910 0.39 -0.0
3,172,089 + ABZR88_RS12910 0.40 +0.1
3,172,268 + ABZR88_RS12910 0.53 +0.1
3,172,268 + ABZR88_RS12910 0.53 -0.3
3,172,269 - ABZR88_RS12910 0.53 +0.3
3,172,312 + ABZR88_RS12910 0.56 +0.1
3,172,312 + ABZR88_RS12910 0.56 -0.1
3,172,313 - ABZR88_RS12910 0.56 -0.1
3,172,374 - ABZR88_RS12910 0.60 +0.1
3,172,391 - ABZR88_RS12910 0.61 -0.1

Or see this region's nucleotide sequence