Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS11710

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS11705 and ABZR88_RS11710 are separated by 128 nucleotidesABZR88_RS11710 and ABZR88_RS11715 are separated by 29 nucleotidesABZR88_RS11715 and ABZR88_RS11720 are separated by 141 nucleotides ABZR88_RS11705: ABZR88_RS11705 - phosphoenolpyruvate synthase, at 2,880,198 to 2,882,642 _RS11705 ABZR88_RS11710: ABZR88_RS11710 - AraC family transcriptional regulator, at 2,882,771 to 2,883,664 _RS11710 ABZR88_RS11715: ABZR88_RS11715 - hypothetical protein, at 2,883,694 to 2,884,215 _RS11715 ABZR88_RS11720: ABZR88_RS11720 - NAD-dependent DNA ligase LigA, at 2,884,357 to 2,886,363 _RS11720 Position (kb) 2882 2883 2884Strain fitness (log2 ratio) -1 0 1at 2881.804 kb on - strand, within ABZR88_RS11705at 2881.807 kb on - strand, within ABZR88_RS11705at 2881.902 kb on + strand, within ABZR88_RS11705at 2882.059 kb on - strand, within ABZR88_RS11705at 2882.206 kb on + strand, within ABZR88_RS11705at 2882.206 kb on + strand, within ABZR88_RS11705at 2882.206 kb on + strand, within ABZR88_RS11705at 2882.281 kb on - strand, within ABZR88_RS11705at 2882.299 kb on + strand, within ABZR88_RS11705at 2882.304 kb on - strand, within ABZR88_RS11705at 2882.448 kb on - strandat 2882.465 kb on + strandat 2882.485 kb on + strandat 2882.486 kb on - strandat 2882.626 kb on + strandat 2882.762 kb on + strandat 2883.002 kb on + strand, within ABZR88_RS11710at 2883.124 kb on + strand, within ABZR88_RS11710at 2883.182 kb on - strand, within ABZR88_RS11710at 2883.305 kb on - strand, within ABZR88_RS11710at 2883.320 kb on + strand, within ABZR88_RS11710at 2883.346 kb on + strand, within ABZR88_RS11710at 2883.350 kb on - strand, within ABZR88_RS11710at 2883.385 kb on + strand, within ABZR88_RS11710at 2883.385 kb on + strand, within ABZR88_RS11710at 2883.495 kb on + strand, within ABZR88_RS11710at 2883.503 kb on - strand, within ABZR88_RS11710at 2883.572 kb on - strand, within ABZR88_RS11710at 2883.650 kb on - strandat 2883.904 kb on - strand, within ABZR88_RS11715at 2884.218 kb on + strandat 2884.235 kb on + strandat 2884.237 kb on + strandat 2884.238 kb on - strandat 2884.325 kb on + strandat 2884.358 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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2,881,804 - ABZR88_RS11705 0.66 +1.4
2,881,807 - ABZR88_RS11705 0.66 -0.6
2,881,902 + ABZR88_RS11705 0.70 +0.0
2,882,059 - ABZR88_RS11705 0.76 -0.0
2,882,206 + ABZR88_RS11705 0.82 +0.1
2,882,206 + ABZR88_RS11705 0.82 -0.3
2,882,206 + ABZR88_RS11705 0.82 +0.1
2,882,281 - ABZR88_RS11705 0.85 +0.1
2,882,299 + ABZR88_RS11705 0.86 -0.4
2,882,304 - ABZR88_RS11705 0.86 +0.4
2,882,448 - +0.1
2,882,465 + +0.1
2,882,485 + +0.1
2,882,486 - -0.0
2,882,626 + -0.7
2,882,762 + -0.2
2,883,002 + ABZR88_RS11710 0.26 -1.7
2,883,124 + ABZR88_RS11710 0.39 -0.4
2,883,182 - ABZR88_RS11710 0.46 +1.6
2,883,305 - ABZR88_RS11710 0.60 +0.0
2,883,320 + ABZR88_RS11710 0.61 -0.0
2,883,346 + ABZR88_RS11710 0.64 -0.1
2,883,350 - ABZR88_RS11710 0.65 +0.2
2,883,385 + ABZR88_RS11710 0.69 -0.4
2,883,385 + ABZR88_RS11710 0.69 -0.0
2,883,495 + ABZR88_RS11710 0.81 +0.5
2,883,503 - ABZR88_RS11710 0.82 -0.4
2,883,572 - ABZR88_RS11710 0.90 -0.0
2,883,650 - -0.2
2,883,904 - ABZR88_RS11715 0.40 +0.3
2,884,218 + -0.7
2,884,235 + -0.2
2,884,237 + -0.8
2,884,238 - -0.3
2,884,325 + +0.7
2,884,358 + -0.1

Or see this region's nucleotide sequence