Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS11675 and ABZR88_RS11680 are separated by 111 nucleotides ABZR88_RS11680 and ABZR88_RS11685 are separated by 110 nucleotides ABZR88_RS11685 and ABZR88_RS11690 are separated by 59 nucleotides ABZR88_RS11690 and ABZR88_RS11695 are separated by 147 nucleotides
ABZR88_RS11675: ABZR88_RS11675 - alpha/beta fold hydrolase, at 2,873,542 to 2,874,822
_RS11675
ABZR88_RS11680: ABZR88_RS11680 - DinB family protein, at 2,874,934 to 2,875,404
_RS11680
ABZR88_RS11685: ABZR88_RS11685 - DUF885 domain-containing protein, at 2,875,515 to 2,877,287
_RS11685
ABZR88_RS11690: ABZR88_RS11690 - YXWGXW repeat-containing protein, at 2,877,347 to 2,877,649
_RS11690
ABZR88_RS11695: ABZR88_RS11695 - SGNH/GDSL hydrolase family protein, at 2,877,797 to 2,878,870
_RS11695
Position (kb)
2875
2876
2877
2878 Strain fitness (log2 ratio)
-1
0
1
2 at 2875.126 kb on - strand, within ABZR88_RS11680 at 2875.126 kb on - strand, within ABZR88_RS11680 at 2875.224 kb on + strand, within ABZR88_RS11680 at 2875.245 kb on + strand, within ABZR88_RS11680 at 2875.488 kb on + strand at 2875.500 kb on + strand at 2875.528 kb on + strand at 2875.529 kb on - strand at 2875.610 kb on + strand at 2875.610 kb on + strand at 2875.699 kb on - strand, within ABZR88_RS11685 at 2875.884 kb on + strand, within ABZR88_RS11685 at 2875.932 kb on - strand, within ABZR88_RS11685 at 2876.013 kb on - strand, within ABZR88_RS11685 at 2876.268 kb on + strand, within ABZR88_RS11685 at 2876.283 kb on - strand, within ABZR88_RS11685 at 2876.353 kb on + strand, within ABZR88_RS11685 at 2876.370 kb on - strand, within ABZR88_RS11685 at 2876.375 kb on + strand, within ABZR88_RS11685 at 2876.452 kb on + strand, within ABZR88_RS11685 at 2876.453 kb on - strand, within ABZR88_RS11685 at 2876.601 kb on + strand, within ABZR88_RS11685 at 2876.784 kb on + strand, within ABZR88_RS11685 at 2876.786 kb on + strand, within ABZR88_RS11685 at 2876.787 kb on - strand, within ABZR88_RS11685 at 2876.972 kb on - strand, within ABZR88_RS11685 at 2877.248 kb on + strand at 2877.345 kb on + strand at 2877.346 kb on - strand at 2877.456 kb on + strand, within ABZR88_RS11690 at 2877.457 kb on - strand, within ABZR88_RS11690 at 2877.559 kb on + strand, within ABZR88_RS11690 at 2877.670 kb on - strand at 2877.672 kb on - strand at 2877.791 kb on - strand at 2877.888 kb on - strand at 2877.888 kb on - strand at 2877.955 kb on + strand, within ABZR88_RS11695 at 2878.022 kb on - strand, within ABZR88_RS11695 at 2878.252 kb on + strand, within ABZR88_RS11695 at 2878.273 kb on - strand, within ABZR88_RS11695
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 2,875,126 - ABZR88_RS11680 0.41 -0.3 2,875,126 - ABZR88_RS11680 0.41 -1.3 2,875,224 + ABZR88_RS11680 0.62 -0.3 2,875,245 + ABZR88_RS11680 0.66 -0.8 2,875,488 + -0.3 2,875,500 + +0.0 2,875,528 + -0.1 2,875,529 - +1.1 2,875,610 + -0.4 2,875,610 + +2.7 2,875,699 - ABZR88_RS11685 0.10 -0.7 2,875,884 + ABZR88_RS11685 0.21 -0.4 2,875,932 - ABZR88_RS11685 0.24 +0.1 2,876,013 - ABZR88_RS11685 0.28 -0.5 2,876,268 + ABZR88_RS11685 0.42 +0.7 2,876,283 - ABZR88_RS11685 0.43 +0.2 2,876,353 + ABZR88_RS11685 0.47 -0.2 2,876,370 - ABZR88_RS11685 0.48 -0.1 2,876,375 + ABZR88_RS11685 0.49 -0.6 2,876,452 + ABZR88_RS11685 0.53 -0.5 2,876,453 - ABZR88_RS11685 0.53 -1.2 2,876,601 + ABZR88_RS11685 0.61 +0.3 2,876,784 + ABZR88_RS11685 0.72 +0.8 2,876,786 + ABZR88_RS11685 0.72 +0.0 2,876,787 - ABZR88_RS11685 0.72 -0.4 2,876,972 - ABZR88_RS11685 0.82 -0.1 2,877,248 + -0.4 2,877,345 + -0.0 2,877,346 - -0.4 2,877,456 + ABZR88_RS11690 0.36 -1.2 2,877,457 - ABZR88_RS11690 0.36 -0.2 2,877,559 + ABZR88_RS11690 0.70 +0.1 2,877,670 - +1.1 2,877,672 - -0.3 2,877,791 - +0.4 2,877,888 - -0.3 2,877,888 - -1.2 2,877,955 + ABZR88_RS11695 0.15 -0.4 2,878,022 - ABZR88_RS11695 0.21 -0.4 2,878,252 + ABZR88_RS11695 0.42 +0.1 2,878,273 - ABZR88_RS11695 0.44 +0.2
Or see this region's nucleotide sequence