Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS08955 and ABZR88_RS08960 are separated by 59 nucleotides ABZR88_RS08960 and ABZR88_RS08965 are separated by 6 nucleotides ABZR88_RS08965 and ABZR88_RS08970 overlap by 4 nucleotides
ABZR88_RS08955: ABZR88_RS08955 - glycosyltransferase family 4 protein, at 2,252,051 to 2,253,121
_RS08955
ABZR88_RS08960: ABZR88_RS08960 - glycosyltransferase, at 2,253,181 to 2,254,038
_RS08960
ABZR88_RS08965: ABZR88_RS08965 - DegT/DnrJ/EryC1/StrS aminotransferase family protein, at 2,254,045 to 2,255,214
_RS08965
ABZR88_RS08970: ABZR88_RS08970 - lipopolysaccharide biosynthesis protein, at 2,255,211 to 2,256,650
_RS08970
Position (kb)
2254
2255
2256 Strain fitness (log2 ratio)
-2
-1
0
1 at 2253.262 kb on + strand at 2253.265 kb on + strand at 2253.316 kb on - strand, within ABZR88_RS08960 at 2253.361 kb on + strand, within ABZR88_RS08960 at 2253.448 kb on - strand, within ABZR88_RS08960 at 2253.622 kb on + strand, within ABZR88_RS08960 at 2253.652 kb on - strand, within ABZR88_RS08960 at 2253.675 kb on + strand, within ABZR88_RS08960 at 2253.676 kb on - strand, within ABZR88_RS08960 at 2253.680 kb on + strand, within ABZR88_RS08960 at 2253.766 kb on - strand, within ABZR88_RS08960 at 2253.768 kb on - strand, within ABZR88_RS08960 at 2253.789 kb on + strand, within ABZR88_RS08960 at 2253.835 kb on + strand, within ABZR88_RS08960 at 2253.869 kb on + strand, within ABZR88_RS08960 at 2253.995 kb on + strand at 2254.021 kb on + strand at 2254.084 kb on - strand at 2254.388 kb on + strand, within ABZR88_RS08965 at 2254.499 kb on + strand, within ABZR88_RS08965 at 2254.572 kb on + strand, within ABZR88_RS08965 at 2254.577 kb on - strand, within ABZR88_RS08965 at 2254.603 kb on + strand, within ABZR88_RS08965 at 2254.733 kb on + strand, within ABZR88_RS08965 at 2254.802 kb on - strand, within ABZR88_RS08965 at 2254.808 kb on + strand, within ABZR88_RS08965 at 2254.812 kb on + strand, within ABZR88_RS08965 at 2255.066 kb on + strand, within ABZR88_RS08965 at 2255.072 kb on - strand, within ABZR88_RS08965 at 2255.170 kb on - strand at 2255.313 kb on + strand at 2255.336 kb on + strand at 2255.409 kb on + strand, within ABZR88_RS08970 at 2255.474 kb on - strand, within ABZR88_RS08970 at 2255.509 kb on - strand, within ABZR88_RS08970 at 2255.519 kb on - strand, within ABZR88_RS08970 at 2255.648 kb on - strand, within ABZR88_RS08970 at 2255.681 kb on - strand, within ABZR88_RS08970 at 2255.987 kb on + strand, within ABZR88_RS08970 at 2255.992 kb on - strand, within ABZR88_RS08970 at 2256.014 kb on + strand, within ABZR88_RS08970 at 2256.093 kb on + strand, within ABZR88_RS08970 at 2256.180 kb on + strand, within ABZR88_RS08970
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 2,253,262 + +0.5 2,253,265 + +0.2 2,253,316 - ABZR88_RS08960 0.16 -0.5 2,253,361 + ABZR88_RS08960 0.21 -1.3 2,253,448 - ABZR88_RS08960 0.31 -1.0 2,253,622 + ABZR88_RS08960 0.51 -0.2 2,253,652 - ABZR88_RS08960 0.55 -0.0 2,253,675 + ABZR88_RS08960 0.58 -0.1 2,253,676 - ABZR88_RS08960 0.58 +0.5 2,253,680 + ABZR88_RS08960 0.58 +0.1 2,253,766 - ABZR88_RS08960 0.68 -0.7 2,253,768 - ABZR88_RS08960 0.68 -0.3 2,253,789 + ABZR88_RS08960 0.71 -0.5 2,253,835 + ABZR88_RS08960 0.76 -0.1 2,253,869 + ABZR88_RS08960 0.80 +1.1 2,253,995 + +0.1 2,254,021 + -1.9 2,254,084 - +0.2 2,254,388 + ABZR88_RS08965 0.29 -0.3 2,254,499 + ABZR88_RS08965 0.39 +0.4 2,254,572 + ABZR88_RS08965 0.45 -0.2 2,254,577 - ABZR88_RS08965 0.45 -0.1 2,254,603 + ABZR88_RS08965 0.48 +0.5 2,254,733 + ABZR88_RS08965 0.59 -1.3 2,254,802 - ABZR88_RS08965 0.65 +0.5 2,254,808 + ABZR88_RS08965 0.65 +0.1 2,254,812 + ABZR88_RS08965 0.66 -0.9 2,255,066 + ABZR88_RS08965 0.87 +0.3 2,255,072 - ABZR88_RS08965 0.88 -0.0 2,255,170 - -0.1 2,255,313 + +0.0 2,255,336 + +0.0 2,255,409 + ABZR88_RS08970 0.14 -0.2 2,255,474 - ABZR88_RS08970 0.18 -0.3 2,255,509 - ABZR88_RS08970 0.21 +0.0 2,255,519 - ABZR88_RS08970 0.21 -0.1 2,255,648 - ABZR88_RS08970 0.30 -0.9 2,255,681 - ABZR88_RS08970 0.33 -0.0 2,255,987 + ABZR88_RS08970 0.54 -1.3 2,255,992 - ABZR88_RS08970 0.54 -0.3 2,256,014 + ABZR88_RS08970 0.56 -1.1 2,256,093 + ABZR88_RS08970 0.61 -0.7 2,256,180 + ABZR88_RS08970 0.67 -0.2
Or see this region's nucleotide sequence