Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS08965

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS08955 and ABZR88_RS08960 are separated by 59 nucleotidesABZR88_RS08960 and ABZR88_RS08965 are separated by 6 nucleotidesABZR88_RS08965 and ABZR88_RS08970 overlap by 4 nucleotides ABZR88_RS08955: ABZR88_RS08955 - glycosyltransferase family 4 protein, at 2,252,051 to 2,253,121 _RS08955 ABZR88_RS08960: ABZR88_RS08960 - glycosyltransferase, at 2,253,181 to 2,254,038 _RS08960 ABZR88_RS08965: ABZR88_RS08965 - DegT/DnrJ/EryC1/StrS aminotransferase family protein, at 2,254,045 to 2,255,214 _RS08965 ABZR88_RS08970: ABZR88_RS08970 - lipopolysaccharide biosynthesis protein, at 2,255,211 to 2,256,650 _RS08970 Position (kb) 2254 2255 2256Strain fitness (log2 ratio) -2 -1 0 1at 2253.262 kb on + strandat 2253.265 kb on + strandat 2253.316 kb on - strand, within ABZR88_RS08960at 2253.361 kb on + strand, within ABZR88_RS08960at 2253.448 kb on - strand, within ABZR88_RS08960at 2253.622 kb on + strand, within ABZR88_RS08960at 2253.652 kb on - strand, within ABZR88_RS08960at 2253.675 kb on + strand, within ABZR88_RS08960at 2253.676 kb on - strand, within ABZR88_RS08960at 2253.680 kb on + strand, within ABZR88_RS08960at 2253.766 kb on - strand, within ABZR88_RS08960at 2253.768 kb on - strand, within ABZR88_RS08960at 2253.789 kb on + strand, within ABZR88_RS08960at 2253.835 kb on + strand, within ABZR88_RS08960at 2253.869 kb on + strand, within ABZR88_RS08960at 2253.995 kb on + strandat 2254.021 kb on + strandat 2254.084 kb on - strandat 2254.388 kb on + strand, within ABZR88_RS08965at 2254.499 kb on + strand, within ABZR88_RS08965at 2254.572 kb on + strand, within ABZR88_RS08965at 2254.577 kb on - strand, within ABZR88_RS08965at 2254.603 kb on + strand, within ABZR88_RS08965at 2254.733 kb on + strand, within ABZR88_RS08965at 2254.802 kb on - strand, within ABZR88_RS08965at 2254.808 kb on + strand, within ABZR88_RS08965at 2254.812 kb on + strand, within ABZR88_RS08965at 2255.066 kb on + strand, within ABZR88_RS08965at 2255.072 kb on - strand, within ABZR88_RS08965at 2255.170 kb on - strandat 2255.313 kb on + strandat 2255.336 kb on + strandat 2255.409 kb on + strand, within ABZR88_RS08970at 2255.474 kb on - strand, within ABZR88_RS08970at 2255.509 kb on - strand, within ABZR88_RS08970at 2255.519 kb on - strand, within ABZR88_RS08970at 2255.648 kb on - strand, within ABZR88_RS08970at 2255.681 kb on - strand, within ABZR88_RS08970at 2255.987 kb on + strand, within ABZR88_RS08970at 2255.992 kb on - strand, within ABZR88_RS08970at 2256.014 kb on + strand, within ABZR88_RS08970at 2256.093 kb on + strand, within ABZR88_RS08970at 2256.180 kb on + strand, within ABZR88_RS08970

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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2,253,262 + +0.5
2,253,265 + +0.2
2,253,316 - ABZR88_RS08960 0.16 -0.5
2,253,361 + ABZR88_RS08960 0.21 -1.3
2,253,448 - ABZR88_RS08960 0.31 -1.0
2,253,622 + ABZR88_RS08960 0.51 -0.2
2,253,652 - ABZR88_RS08960 0.55 -0.0
2,253,675 + ABZR88_RS08960 0.58 -0.1
2,253,676 - ABZR88_RS08960 0.58 +0.5
2,253,680 + ABZR88_RS08960 0.58 +0.1
2,253,766 - ABZR88_RS08960 0.68 -0.7
2,253,768 - ABZR88_RS08960 0.68 -0.3
2,253,789 + ABZR88_RS08960 0.71 -0.5
2,253,835 + ABZR88_RS08960 0.76 -0.1
2,253,869 + ABZR88_RS08960 0.80 +1.1
2,253,995 + +0.1
2,254,021 + -1.9
2,254,084 - +0.2
2,254,388 + ABZR88_RS08965 0.29 -0.3
2,254,499 + ABZR88_RS08965 0.39 +0.4
2,254,572 + ABZR88_RS08965 0.45 -0.2
2,254,577 - ABZR88_RS08965 0.45 -0.1
2,254,603 + ABZR88_RS08965 0.48 +0.5
2,254,733 + ABZR88_RS08965 0.59 -1.3
2,254,802 - ABZR88_RS08965 0.65 +0.5
2,254,808 + ABZR88_RS08965 0.65 +0.1
2,254,812 + ABZR88_RS08965 0.66 -0.9
2,255,066 + ABZR88_RS08965 0.87 +0.3
2,255,072 - ABZR88_RS08965 0.88 -0.0
2,255,170 - -0.1
2,255,313 + +0.0
2,255,336 + +0.0
2,255,409 + ABZR88_RS08970 0.14 -0.2
2,255,474 - ABZR88_RS08970 0.18 -0.3
2,255,509 - ABZR88_RS08970 0.21 +0.0
2,255,519 - ABZR88_RS08970 0.21 -0.1
2,255,648 - ABZR88_RS08970 0.30 -0.9
2,255,681 - ABZR88_RS08970 0.33 -0.0
2,255,987 + ABZR88_RS08970 0.54 -1.3
2,255,992 - ABZR88_RS08970 0.54 -0.3
2,256,014 + ABZR88_RS08970 0.56 -1.1
2,256,093 + ABZR88_RS08970 0.61 -0.7
2,256,180 + ABZR88_RS08970 0.67 -0.2

Or see this region's nucleotide sequence