Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS00130 and ABZR88_RS00135 are separated by 145 nucleotides ABZR88_RS00135 and ABZR88_RS00140 are separated by 271 nucleotides ABZR88_RS00140 and ABZR88_RS00145 are separated by 143 nucleotides ABZR88_RS00145 and ABZR88_RS00150 are separated by 12 nucleotides ABZR88_RS00150 and ABZR88_RS00155 are separated by 15 nucleotides
ABZR88_RS00130: ABZR88_RS00130 - transcription elongation factor GreA, at 22,010 to 22,483
_RS00130
ABZR88_RS00135: ABZR88_RS00135 - HIT family protein, at 22,629 to 23,045
_RS00135
ABZR88_RS00140: ABZR88_RS00140 - AAA family ATPase, at 23,317 to 23,853
_RS00140
ABZR88_RS00145: ABZR88_RS00145 - DUF177 domain-containing protein, at 23,997 to 24,521
_RS00145
ABZR88_RS00150: ABZR88_RS00150 - 50S ribosomal protein L32, at 24,534 to 24,725
_RS00150
ABZR88_RS00155: ABZR88_RS00155 - phosphate acyltransferase PlsX, at 24,741 to 25,682
_RS00155
Position (kb)
23
24 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 22.376 kb on - strand, within ABZR88_RS00130 at 22.485 kb on - strand at 22.495 kb on + strand at 22.536 kb on + strand at 22.537 kb on - strand at 22.537 kb on - strand at 22.651 kb on + strand at 22.666 kb on + strand at 22.770 kb on + strand, within ABZR88_RS00135 at 22.770 kb on + strand, within ABZR88_RS00135 at 22.798 kb on - strand, within ABZR88_RS00135 at 22.880 kb on - strand, within ABZR88_RS00135 at 22.922 kb on + strand, within ABZR88_RS00135 at 22.922 kb on + strand, within ABZR88_RS00135 at 23.269 kb on - strand at 23.296 kb on + strand at 23.465 kb on + strand, within ABZR88_RS00140 at 23.466 kb on - strand, within ABZR88_RS00140 at 23.560 kb on - strand, within ABZR88_RS00140 at 23.647 kb on + strand, within ABZR88_RS00140 at 23.769 kb on - strand, within ABZR88_RS00140 at 23.774 kb on + strand, within ABZR88_RS00140 at 24.015 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 22,376 - ABZR88_RS00130 0.77 -1.0 22,485 - -0.7 22,495 + -0.7 22,536 + +0.2 22,537 - +0.3 22,537 - -2.6 22,651 + +1.4 22,666 + +1.3 22,770 + ABZR88_RS00135 0.34 +1.0 22,770 + ABZR88_RS00135 0.34 +2.6 22,798 - ABZR88_RS00135 0.41 +0.9 22,880 - ABZR88_RS00135 0.60 +0.7 22,922 + ABZR88_RS00135 0.70 +2.0 22,922 + ABZR88_RS00135 0.70 +1.4 23,269 - -0.0 23,296 + -0.6 23,465 + ABZR88_RS00140 0.28 -1.7 23,466 - ABZR88_RS00140 0.28 -0.5 23,560 - ABZR88_RS00140 0.45 -0.3 23,647 + ABZR88_RS00140 0.61 -1.8 23,769 - ABZR88_RS00140 0.84 -0.5 23,774 + ABZR88_RS00140 0.85 -0.3 24,015 + -1.8
Or see this region's nucleotide sequence