Strain Fitness in Pseudomonas sp. RS175 around PFR28_00564

Experiment: D-Glucosamine Hydrochloride (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00562 and PFR28_00563 are separated by 172 nucleotidesPFR28_00563 and PFR28_00564 overlap by 11 nucleotidesPFR28_00564 and PFR28_00565 are separated by 178 nucleotides PFR28_00562: PFR28_00562 - Glucokinase, at 601,492 to 602,451 _00562 PFR28_00563: PFR28_00563 - Transcriptional regulatory protein OmpR, at 602,624 to 603,355 _00563 PFR28_00564: PFR28_00564 - Adaptive-response sensory-kinase SasA, at 603,345 to 604,814 _00564 PFR28_00565: PFR28_00565 - Sulfoquinovose isomerase, at 604,993 to 606,252 _00565 Position (kb) 603 604 605Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 602.359 kb on + strandat 602.359 kb on + strandat 602.360 kb on - strandat 602.466 kb on - strandat 602.501 kb on + strandat 602.501 kb on + strandat 602.501 kb on + strandat 602.501 kb on + strandat 602.568 kb on + strandat 602.568 kb on + strandat 602.568 kb on + strandat 602.569 kb on - strandat 602.569 kb on - strandat 602.569 kb on - strandat 602.569 kb on - strandat 602.588 kb on + strandat 602.588 kb on + strandat 602.588 kb on + strandat 602.588 kb on + strandat 602.588 kb on + strandat 602.589 kb on - strandat 602.589 kb on - strandat 602.589 kb on - strandat 602.589 kb on - strandat 602.693 kb on + strandat 602.693 kb on + strandat 602.693 kb on + strandat 602.693 kb on + strandat 602.693 kb on + strandat 602.694 kb on - strandat 602.694 kb on - strandat 602.694 kb on - strandat 602.694 kb on - strandat 602.694 kb on - strandat 602.937 kb on - strand, within PFR28_00563at 603.061 kb on + strand, within PFR28_00563at 603.061 kb on + strand, within PFR28_00563at 603.061 kb on + strand, within PFR28_00563at 603.296 kb on - strandat 603.555 kb on + strand, within PFR28_00564at 603.555 kb on + strand, within PFR28_00564at 603.556 kb on - strand, within PFR28_00564at 603.718 kb on + strand, within PFR28_00564at 603.718 kb on + strand, within PFR28_00564at 603.718 kb on + strand, within PFR28_00564at 603.718 kb on + strand, within PFR28_00564at 603.719 kb on - strand, within PFR28_00564at 603.719 kb on - strand, within PFR28_00564at 603.719 kb on - strand, within PFR28_00564at 603.719 kb on - strand, within PFR28_00564at 603.837 kb on + strand, within PFR28_00564at 603.838 kb on - strand, within PFR28_00564at 603.838 kb on - strand, within PFR28_00564at 603.838 kb on - strand, within PFR28_00564at 603.912 kb on + strand, within PFR28_00564at 603.912 kb on + strand, within PFR28_00564at 603.912 kb on + strand, within PFR28_00564at 603.912 kb on + strand, within PFR28_00564at 603.912 kb on + strand, within PFR28_00564at 603.912 kb on + strand, within PFR28_00564at 603.913 kb on - strand, within PFR28_00564at 603.913 kb on - strand, within PFR28_00564at 603.913 kb on - strand, within PFR28_00564at 603.913 kb on - strand, within PFR28_00564at 603.913 kb on - strand, within PFR28_00564at 603.913 kb on - strand, within PFR28_00564at 603.913 kb on - strand, within PFR28_00564at 603.913 kb on - strand, within PFR28_00564at 603.913 kb on - strand, within PFR28_00564at 603.913 kb on - strand, within PFR28_00564at 603.913 kb on - strand, within PFR28_00564at 603.913 kb on - strand, within PFR28_00564at 603.939 kb on + strand, within PFR28_00564at 603.939 kb on + strand, within PFR28_00564at 603.939 kb on + strand, within PFR28_00564at 603.939 kb on + strand, within PFR28_00564at 603.939 kb on + strand, within PFR28_00564at 603.939 kb on + strand, within PFR28_00564at 603.940 kb on - strand, within PFR28_00564at 603.940 kb on - strand, within PFR28_00564at 603.940 kb on - strand, within PFR28_00564at 603.940 kb on - strand, within PFR28_00564at 603.941 kb on + strand, within PFR28_00564at 603.942 kb on - strand, within PFR28_00564at 603.942 kb on - strand, within PFR28_00564at 603.942 kb on - strand, within PFR28_00564at 604.200 kb on - strand, within PFR28_00564at 604.428 kb on + strand, within PFR28_00564at 604.429 kb on - strand, within PFR28_00564at 604.485 kb on + strand, within PFR28_00564at 604.571 kb on + strand, within PFR28_00564at 604.693 kb on - strandat 604.832 kb on + strandat 604.832 kb on + strandat 604.832 kb on + strandat 604.833 kb on - strandat 604.833 kb on - strandat 604.833 kb on - strandat 604.913 kb on + strandat 604.914 kb on - strandat 604.955 kb on + strandat 604.955 kb on + strandat 604.956 kb on - strandat 604.956 kb on - strandat 604.956 kb on - strandat 604.987 kb on - strandat 605.132 kb on + strand, within PFR28_00565at 605.132 kb on + strand, within PFR28_00565at 605.133 kb on - strand, within PFR28_00565at 605.133 kb on - strand, within PFR28_00565at 605.190 kb on + strand, within PFR28_00565at 605.190 kb on + strand, within PFR28_00565at 605.190 kb on + strand, within PFR28_00565at 605.190 kb on + strand, within PFR28_00565at 605.191 kb on - strand, within PFR28_00565at 605.191 kb on - strand, within PFR28_00565at 605.208 kb on + strand, within PFR28_00565at 605.208 kb on + strand, within PFR28_00565at 605.208 kb on + strand, within PFR28_00565at 605.208 kb on + strand, within PFR28_00565at 605.208 kb on + strand, within PFR28_00565at 605.208 kb on + strand, within PFR28_00565at 605.209 kb on - strand, within PFR28_00565at 605.209 kb on - strand, within PFR28_00565at 605.209 kb on - strand, within PFR28_00565at 605.209 kb on - strand, within PFR28_00565at 605.209 kb on - strand, within PFR28_00565at 605.209 kb on - strand, within PFR28_00565at 605.516 kb on - strand, within PFR28_00565at 605.653 kb on + strand, within PFR28_00565at 605.653 kb on + strand, within PFR28_00565at 605.653 kb on + strand, within PFR28_00565at 605.653 kb on + strand, within PFR28_00565at 605.654 kb on - strand, within PFR28_00565at 605.654 kb on - strand, within PFR28_00565at 605.654 kb on - strand, within PFR28_00565at 605.654 kb on - strand, within PFR28_00565at 605.654 kb on - strand, within PFR28_00565at 605.654 kb on - strand, within PFR28_00565at 605.654 kb on - strand, within PFR28_00565at 605.654 kb on - strand, within PFR28_00565at 605.654 kb on - strand, within PFR28_00565at 605.654 kb on - strand, within PFR28_00565at 605.654 kb on - strand, within PFR28_00565at 605.654 kb on - strand, within PFR28_00565at 605.701 kb on + strand, within PFR28_00565at 605.702 kb on - strand, within PFR28_00565at 605.702 kb on - strand, within PFR28_00565at 605.702 kb on - strand, within PFR28_00565at 605.702 kb on - strand, within PFR28_00565at 605.745 kb on + strand, within PFR28_00565at 605.746 kb on - strand, within PFR28_00565at 605.746 kb on - strand, within PFR28_00565at 605.804 kb on + strand, within PFR28_00565

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) 10 mM
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602,359 + -1.2
602,359 + -1.2
602,360 - -0.3
602,466 - -0.1
602,501 + -2.8
602,501 + -2.5
602,501 + -3.9
602,501 + -1.9
602,568 + -2.6
602,568 + -2.7
602,568 + -1.8
602,569 - +1.8
602,569 - +2.4
602,569 - +1.6
602,569 - +1.6
602,588 + -2.3
602,588 + -3.7
602,588 + -0.4
602,588 + -2.5
602,588 + -2.5
602,589 - +3.3
602,589 - +2.6
602,589 - +1.9
602,589 - +2.6
602,693 + +2.9
602,693 + +2.6
602,693 + +2.8
602,693 + +2.9
602,693 + +3.5
602,694 - +2.4
602,694 - +2.7
602,694 - +3.0
602,694 - +2.8
602,694 - +3.2
602,937 - PFR28_00563 0.43 +1.9
603,061 + PFR28_00563 0.60 +3.4
603,061 + PFR28_00563 0.60 +1.9
603,061 + PFR28_00563 0.60 +1.6
603,296 - +2.7
603,555 + PFR28_00564 0.14 +1.8
603,555 + PFR28_00564 0.14 +2.6
603,556 - PFR28_00564 0.14 +2.9
603,718 + PFR28_00564 0.25 +1.8
603,718 + PFR28_00564 0.25 +2.5
603,718 + PFR28_00564 0.25 +2.2
603,718 + PFR28_00564 0.25 +1.8
603,719 - PFR28_00564 0.25 +2.4
603,719 - PFR28_00564 0.25 +1.9
603,719 - PFR28_00564 0.25 +2.6
603,719 - PFR28_00564 0.25 +2.8
603,837 + PFR28_00564 0.33 +1.8
603,838 - PFR28_00564 0.34 +1.6
603,838 - PFR28_00564 0.34 +2.4
603,838 - PFR28_00564 0.34 +2.6
603,912 + PFR28_00564 0.39 +1.2
603,912 + PFR28_00564 0.39 +2.7
603,912 + PFR28_00564 0.39 +1.2
603,912 + PFR28_00564 0.39 +2.5
603,912 + PFR28_00564 0.39 +2.5
603,912 + PFR28_00564 0.39 +1.9
603,913 - PFR28_00564 0.39 +2.6
603,913 - PFR28_00564 0.39 +1.7
603,913 - PFR28_00564 0.39 +2.2
603,913 - PFR28_00564 0.39 +2.7
603,913 - PFR28_00564 0.39 +3.0
603,913 - PFR28_00564 0.39 +4.5
603,913 - PFR28_00564 0.39 +2.1
603,913 - PFR28_00564 0.39 +1.2
603,913 - PFR28_00564 0.39 +1.7
603,913 - PFR28_00564 0.39 +1.0
603,913 - PFR28_00564 0.39 +2.6
603,913 - PFR28_00564 0.39 +1.7
603,939 + PFR28_00564 0.40 +3.2
603,939 + PFR28_00564 0.40 +1.7
603,939 + PFR28_00564 0.40 +2.1
603,939 + PFR28_00564 0.40 +2.2
603,939 + PFR28_00564 0.40 +2.4
603,939 + PFR28_00564 0.40 +0.7
603,940 - PFR28_00564 0.40 +3.2
603,940 - PFR28_00564 0.40 +2.9
603,940 - PFR28_00564 0.40 +2.6
603,940 - PFR28_00564 0.40 +2.6
603,941 + PFR28_00564 0.41 +2.4
603,942 - PFR28_00564 0.41 +2.1
603,942 - PFR28_00564 0.41 +1.8
603,942 - PFR28_00564 0.41 +2.4
604,200 - PFR28_00564 0.58 +2.4
604,428 + PFR28_00564 0.74 +2.2
604,429 - PFR28_00564 0.74 +2.2
604,485 + PFR28_00564 0.78 +2.4
604,571 + PFR28_00564 0.83 +1.8
604,693 - +2.5
604,832 + -0.4
604,832 + -0.3
604,832 + -0.7
604,833 - +0.7
604,833 - +1.1
604,833 - +0.6
604,913 + +0.5
604,914 - -0.6
604,955 + -0.7
604,955 + -0.2
604,956 - +0.2
604,956 - +0.4
604,956 - -0.8
604,987 - +0.4
605,132 + PFR28_00565 0.11 -0.7
605,132 + PFR28_00565 0.11 -0.3
605,133 - PFR28_00565 0.11 +0.1
605,133 - PFR28_00565 0.11 +0.1
605,190 + PFR28_00565 0.16 +0.5
605,190 + PFR28_00565 0.16 -1.9
605,190 + PFR28_00565 0.16 +0.4
605,190 + PFR28_00565 0.16 +0.1
605,191 - PFR28_00565 0.16 -0.0
605,191 - PFR28_00565 0.16 +1.4
605,208 + PFR28_00565 0.17 -1.2
605,208 + PFR28_00565 0.17 -0.3
605,208 + PFR28_00565 0.17 +1.3
605,208 + PFR28_00565 0.17 +0.3
605,208 + PFR28_00565 0.17 -1.6
605,208 + PFR28_00565 0.17 +0.2
605,209 - PFR28_00565 0.17 +0.1
605,209 - PFR28_00565 0.17 -0.7
605,209 - PFR28_00565 0.17 +2.9
605,209 - PFR28_00565 0.17 +0.2
605,209 - PFR28_00565 0.17 -0.2
605,209 - PFR28_00565 0.17 -0.6
605,516 - PFR28_00565 0.42 -0.1
605,653 + PFR28_00565 0.52 -1.1
605,653 + PFR28_00565 0.52 -0.2
605,653 + PFR28_00565 0.52 +0.1
605,653 + PFR28_00565 0.52 -0.0
605,654 - PFR28_00565 0.52 -0.4
605,654 - PFR28_00565 0.52 -0.7
605,654 - PFR28_00565 0.52 +0.6
605,654 - PFR28_00565 0.52 -0.0
605,654 - PFR28_00565 0.52 -0.9
605,654 - PFR28_00565 0.52 +0.8
605,654 - PFR28_00565 0.52 +0.4
605,654 - PFR28_00565 0.52 +0.4
605,654 - PFR28_00565 0.52 +0.8
605,654 - PFR28_00565 0.52 +0.4
605,654 - PFR28_00565 0.52 +0.6
605,654 - PFR28_00565 0.52 +0.7
605,701 + PFR28_00565 0.56 -1.1
605,702 - PFR28_00565 0.56 -1.0
605,702 - PFR28_00565 0.56 -1.0
605,702 - PFR28_00565 0.56 +0.5
605,702 - PFR28_00565 0.56 -0.8
605,745 + PFR28_00565 0.60 -2.3
605,746 - PFR28_00565 0.60 +0.6
605,746 - PFR28_00565 0.60 +0.3
605,804 + PFR28_00565 0.64 -1.5

Or see this region's nucleotide sequence