Strain Fitness in Pseudomonas sp. RS175 around PFR28_01353

Experiment: NAG (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_01351 and PFR28_01352 are separated by 111 nucleotidesPFR28_01352 and PFR28_01353 overlap by 1 nucleotidesPFR28_01353 and PFR28_01354 are separated by 7 nucleotides PFR28_01351: PFR28_01351 - putative HTH-type transcriptional regulator, at 1,468,863 to 1,469,903 _01351 PFR28_01352: PFR28_01352 - LexA repressor, at 1,470,015 to 1,470,632 _01352 PFR28_01353: PFR28_01353 - hypothetical protein, at 1,470,632 to 1,471,261 _01353 PFR28_01354: PFR28_01354 - Protein ImuB, at 1,471,269 to 1,472,684 _01354 Position (kb) 1470 1471 1472Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1469.675 kb on + strand, within PFR28_01351at 1470.077 kb on + strand, within PFR28_01352at 1470.366 kb on + strand, within PFR28_01352at 1470.366 kb on + strand, within PFR28_01352at 1470.367 kb on - strand, within PFR28_01352at 1470.433 kb on + strand, within PFR28_01352at 1470.433 kb on + strand, within PFR28_01352at 1470.433 kb on + strand, within PFR28_01352at 1470.433 kb on + strand, within PFR28_01352at 1470.434 kb on - strand, within PFR28_01352at 1470.434 kb on - strand, within PFR28_01352at 1470.555 kb on + strand, within PFR28_01352at 1470.943 kb on - strand, within PFR28_01353at 1471.283 kb on + strandat 1471.283 kb on + strandat 1471.482 kb on + strand, within PFR28_01354at 1471.483 kb on - strand, within PFR28_01354at 1471.483 kb on - strand, within PFR28_01354at 1471.624 kb on + strand, within PFR28_01354at 1471.725 kb on + strand, within PFR28_01354at 1471.725 kb on + strand, within PFR28_01354at 1471.726 kb on - strand, within PFR28_01354at 1471.726 kb on - strand, within PFR28_01354at 1471.767 kb on + strand, within PFR28_01354at 1471.767 kb on + strand, within PFR28_01354at 1471.768 kb on - strand, within PFR28_01354at 1471.768 kb on - strand, within PFR28_01354at 1471.768 kb on - strand, within PFR28_01354at 1471.960 kb on - strand, within PFR28_01354at 1471.960 kb on - strand, within PFR28_01354at 1472.001 kb on + strand, within PFR28_01354at 1472.001 kb on + strand, within PFR28_01354at 1472.001 kb on + strand, within PFR28_01354at 1472.001 kb on + strand, within PFR28_01354at 1472.001 kb on + strand, within PFR28_01354at 1472.001 kb on + strand, within PFR28_01354at 1472.001 kb on + strand, within PFR28_01354at 1472.001 kb on + strand, within PFR28_01354at 1472.001 kb on + strand, within PFR28_01354at 1472.002 kb on - strand, within PFR28_01354at 1472.002 kb on - strand, within PFR28_01354at 1472.002 kb on - strand, within PFR28_01354at 1472.002 kb on - strand, within PFR28_01354at 1472.002 kb on - strand, within PFR28_01354at 1472.002 kb on - strand, within PFR28_01354at 1472.002 kb on - strand, within PFR28_01354at 1472.002 kb on - strand, within PFR28_01354at 1472.002 kb on - strand, within PFR28_01354

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C) 10 mM
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1,469,675 + PFR28_01351 0.78 -0.6
1,470,077 + PFR28_01352 0.10 -1.1
1,470,366 + PFR28_01352 0.57 +0.1
1,470,366 + PFR28_01352 0.57 -0.0
1,470,367 - PFR28_01352 0.57 -1.6
1,470,433 + PFR28_01352 0.68 -0.3
1,470,433 + PFR28_01352 0.68 +0.0
1,470,433 + PFR28_01352 0.68 -0.5
1,470,433 + PFR28_01352 0.68 -1.4
1,470,434 - PFR28_01352 0.68 -0.4
1,470,434 - PFR28_01352 0.68 +0.4
1,470,555 + PFR28_01352 0.87 -1.1
1,470,943 - PFR28_01353 0.49 -0.9
1,471,283 + -0.5
1,471,283 + +0.6
1,471,482 + PFR28_01354 0.15 -1.7
1,471,483 - PFR28_01354 0.15 -0.7
1,471,483 - PFR28_01354 0.15 -2.4
1,471,624 + PFR28_01354 0.25 -0.1
1,471,725 + PFR28_01354 0.32 -0.4
1,471,725 + PFR28_01354 0.32 -1.1
1,471,726 - PFR28_01354 0.32 -1.4
1,471,726 - PFR28_01354 0.32 -1.1
1,471,767 + PFR28_01354 0.35 +0.1
1,471,767 + PFR28_01354 0.35 +0.6
1,471,768 - PFR28_01354 0.35 +0.4
1,471,768 - PFR28_01354 0.35 -0.0
1,471,768 - PFR28_01354 0.35 -0.8
1,471,960 - PFR28_01354 0.49 +0.7
1,471,960 - PFR28_01354 0.49 -0.8
1,472,001 + PFR28_01354 0.52 +0.7
1,472,001 + PFR28_01354 0.52 -1.0
1,472,001 + PFR28_01354 0.52 -0.4
1,472,001 + PFR28_01354 0.52 -0.1
1,472,001 + PFR28_01354 0.52 +0.4
1,472,001 + PFR28_01354 0.52 -0.4
1,472,001 + PFR28_01354 0.52 +1.0
1,472,001 + PFR28_01354 0.52 -0.6
1,472,001 + PFR28_01354 0.52 +0.6
1,472,002 - PFR28_01354 0.52 +0.6
1,472,002 - PFR28_01354 0.52 -0.9
1,472,002 - PFR28_01354 0.52 -0.6
1,472,002 - PFR28_01354 0.52 +1.6
1,472,002 - PFR28_01354 0.52 +0.2
1,472,002 - PFR28_01354 0.52 +0.3
1,472,002 - PFR28_01354 0.52 -0.4
1,472,002 - PFR28_01354 0.52 -0.5
1,472,002 - PFR28_01354 0.52 +2.8

Or see this region's nucleotide sequence