Strain Fitness in Pseudomonas sp. RS175 around PFR28_00575

Experiment: NAG (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00573 and PFR28_00574 overlap by 14 nucleotidesPFR28_00574 and PFR28_00575 are separated by 17 nucleotidesPFR28_00575 and PFR28_00576 are separated by 146 nucleotides PFR28_00573: PFR28_00573 - Glucose-6-phosphate 1-dehydrogenase, at 614,684 to 616,153 _00573 PFR28_00574: PFR28_00574 - 6-phosphogluconolactonase, at 616,140 to 616,853 _00574 PFR28_00575: PFR28_00575 - 2-dehydro-3-deoxy-phosphogluconate aldolase, at 616,871 to 617,536 _00575 PFR28_00576: PFR28_00576 - Isopenicillin N epimerase, at 617,683 to 618,870 _00576 Position (kb) 616 617 618Strain fitness (log2 ratio) -3 -2 -1 0 1at 615.938 kb on + strand, within PFR28_00573at 615.939 kb on - strand, within PFR28_00573at 616.073 kb on + strandat 616.473 kb on + strand, within PFR28_00574at 616.474 kb on - strand, within PFR28_00574at 616.729 kb on + strand, within PFR28_00574at 616.826 kb on + strandat 616.826 kb on + strandat 616.826 kb on + strandat 616.826 kb on + strandat 616.826 kb on + strandat 616.826 kb on + strandat 616.826 kb on + strandat 616.826 kb on + strandat 616.826 kb on + strandat 616.826 kb on + strandat 616.826 kb on + strandat 616.831 kb on + strandat 616.839 kb on + strandat 616.839 kb on + strandat 617.564 kb on - strandat 617.564 kb on - strandat 617.564 kb on - strandat 617.571 kb on + strandat 617.571 kb on + strandat 617.572 kb on - strandat 617.684 kb on + strandat 617.684 kb on + strandat 617.684 kb on + strandat 617.685 kb on - strandat 617.685 kb on - strandat 617.685 kb on - strandat 617.688 kb on + strandat 617.688 kb on + strandat 617.689 kb on - strandat 617.689 kb on - strandat 617.811 kb on - strand, within PFR28_00576at 617.886 kb on - strand, within PFR28_00576at 617.886 kb on - strand, within PFR28_00576at 618.005 kb on + strand, within PFR28_00576at 618.005 kb on + strand, within PFR28_00576at 618.005 kb on + strand, within PFR28_00576at 618.005 kb on + strand, within PFR28_00576at 618.005 kb on + strand, within PFR28_00576at 618.005 kb on + strand, within PFR28_00576at 618.006 kb on - strand, within PFR28_00576at 618.006 kb on - strand, within PFR28_00576at 618.006 kb on - strand, within PFR28_00576at 618.006 kb on - strand, within PFR28_00576at 618.006 kb on - strand, within PFR28_00576at 618.006 kb on - strand, within PFR28_00576at 618.006 kb on - strand, within PFR28_00576at 618.006 kb on - strand, within PFR28_00576at 618.070 kb on - strand, within PFR28_00576at 618.149 kb on + strand, within PFR28_00576at 618.149 kb on + strand, within PFR28_00576at 618.149 kb on + strand, within PFR28_00576at 618.149 kb on + strand, within PFR28_00576at 618.149 kb on + strand, within PFR28_00576at 618.149 kb on + strand, within PFR28_00576at 618.150 kb on - strand, within PFR28_00576at 618.150 kb on - strand, within PFR28_00576at 618.347 kb on + strand, within PFR28_00576at 618.347 kb on + strand, within PFR28_00576at 618.347 kb on + strand, within PFR28_00576at 618.347 kb on + strand, within PFR28_00576at 618.347 kb on + strand, within PFR28_00576at 618.348 kb on - strand, within PFR28_00576at 618.348 kb on - strand, within PFR28_00576at 618.348 kb on - strand, within PFR28_00576at 618.348 kb on - strand, within PFR28_00576at 618.398 kb on + strand, within PFR28_00576at 618.398 kb on + strand, within PFR28_00576at 618.506 kb on + strand, within PFR28_00576at 618.506 kb on + strand, within PFR28_00576at 618.507 kb on - strand, within PFR28_00576

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C) 10 mM
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615,938 + PFR28_00573 0.85 -3.2
615,939 - PFR28_00573 0.85 -0.1
616,073 + -2.9
616,473 + PFR28_00574 0.47 +0.5
616,474 - PFR28_00574 0.47 -1.8
616,729 + PFR28_00574 0.82 +1.5
616,826 + -0.1
616,826 + +1.5
616,826 + -1.8
616,826 + -0.5
616,826 + -2.3
616,826 + -0.5
616,826 + -1.1
616,826 + -1.5
616,826 + -2.3
616,826 + -1.3
616,826 + +1.5
616,831 + +1.5
616,839 + -1.6
616,839 + -0.3
617,564 - +1.0
617,564 - -1.1
617,564 - +0.1
617,571 + -0.1
617,571 + +0.8
617,572 - -0.1
617,684 + +0.7
617,684 + +0.3
617,684 + -0.3
617,685 - -0.4
617,685 - +1.3
617,685 - +1.4
617,688 + -0.1
617,688 + +0.1
617,689 - -1.2
617,689 - +1.2
617,811 - PFR28_00576 0.11 -1.1
617,886 - PFR28_00576 0.17 +0.1
617,886 - PFR28_00576 0.17 +0.1
618,005 + PFR28_00576 0.27 +0.8
618,005 + PFR28_00576 0.27 +0.2
618,005 + PFR28_00576 0.27 +1.4
618,005 + PFR28_00576 0.27 -1.2
618,005 + PFR28_00576 0.27 +0.9
618,005 + PFR28_00576 0.27 -0.2
618,006 - PFR28_00576 0.27 -0.0
618,006 - PFR28_00576 0.27 -0.5
618,006 - PFR28_00576 0.27 -0.5
618,006 - PFR28_00576 0.27 +0.1
618,006 - PFR28_00576 0.27 -0.5
618,006 - PFR28_00576 0.27 +0.0
618,006 - PFR28_00576 0.27 -0.0
618,006 - PFR28_00576 0.27 +0.3
618,070 - PFR28_00576 0.33 +0.7
618,149 + PFR28_00576 0.39 +0.3
618,149 + PFR28_00576 0.39 +0.1
618,149 + PFR28_00576 0.39 -0.5
618,149 + PFR28_00576 0.39 -0.3
618,149 + PFR28_00576 0.39 -0.4
618,149 + PFR28_00576 0.39 +0.9
618,150 - PFR28_00576 0.39 +0.3
618,150 - PFR28_00576 0.39 -1.1
618,347 + PFR28_00576 0.56 -0.5
618,347 + PFR28_00576 0.56 +1.1
618,347 + PFR28_00576 0.56 -0.4
618,347 + PFR28_00576 0.56 -0.7
618,347 + PFR28_00576 0.56 +1.5
618,348 - PFR28_00576 0.56 +1.1
618,348 - PFR28_00576 0.56 -2.5
618,348 - PFR28_00576 0.56 +0.1
618,348 - PFR28_00576 0.56 -1.5
618,398 + PFR28_00576 0.60 -0.2
618,398 + PFR28_00576 0.60 +0.9
618,506 + PFR28_00576 0.69 +0.1
618,506 + PFR28_00576 0.69 +0.8
618,507 - PFR28_00576 0.69 +0.9

Or see this region's nucleotide sequence