Experiment: D-(+)-Galactosamine (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_05106 and PFR28_05107 are separated by 132 nucleotides PFR28_05107 and PFR28_05108 are separated by 21 nucleotides PFR28_05108 and PFR28_05109 are separated by 42 nucleotides
PFR28_05106: PFR28_05106 - Cyclic-di-GMP receptor FimW, at 5,848,785 to 5,850,545
_05106
PFR28_05107: PFR28_05107 - Phosphatidylserine decarboxylase proenzyme, at 5,850,678 to 5,851,538
_05107
PFR28_05108: PFR28_05108 - Thiosulfate sulfurtransferase, at 5,851,560 to 5,852,375
_05108
PFR28_05109: PFR28_05109 - hypothetical protein, at 5,852,418 to 5,853,956
_05109
Position (kb) 5850
5851
5852 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5849.880 kb on + strand, within PFR28_05106 at 5849.880 kb on + strand, within PFR28_05106 at 5849.880 kb on + strand, within PFR28_05106 at 5849.938 kb on + strand, within PFR28_05106 at 5849.938 kb on + strand, within PFR28_05106 at 5849.938 kb on + strand, within PFR28_05106 at 5849.938 kb on + strand, within PFR28_05106 at 5849.938 kb on + strand, within PFR28_05106 at 5849.938 kb on + strand, within PFR28_05106 at 5849.938 kb on + strand, within PFR28_05106 at 5849.939 kb on - strand, within PFR28_05106 at 5849.939 kb on - strand, within PFR28_05106 at 5849.939 kb on - strand, within PFR28_05106 at 5849.939 kb on - strand, within PFR28_05106 at 5849.939 kb on - strand, within PFR28_05106 at 5849.939 kb on - strand, within PFR28_05106 at 5849.939 kb on - strand, within PFR28_05106 at 5849.939 kb on - strand, within PFR28_05106 at 5849.939 kb on - strand, within PFR28_05106 at 5849.939 kb on - strand, within PFR28_05106 at 5849.939 kb on - strand, within PFR28_05106 at 5849.939 kb on - strand, within PFR28_05106 at 5850.028 kb on + strand, within PFR28_05106 at 5850.029 kb on - strand, within PFR28_05106 at 5850.029 kb on - strand, within PFR28_05106 at 5850.073 kb on + strand, within PFR28_05106 at 5850.073 kb on + strand, within PFR28_05106 at 5850.074 kb on - strand, within PFR28_05106 at 5850.074 kb on - strand, within PFR28_05106 at 5850.074 kb on - strand, within PFR28_05106 at 5850.074 kb on - strand, within PFR28_05106 at 5850.196 kb on + strand, within PFR28_05106 at 5850.196 kb on + strand, within PFR28_05106 at 5850.196 kb on + strand, within PFR28_05106 at 5850.196 kb on + strand, within PFR28_05106 at 5850.310 kb on + strand, within PFR28_05106 at 5850.310 kb on + strand, within PFR28_05106 at 5850.310 kb on + strand, within PFR28_05106 at 5850.310 kb on + strand, within PFR28_05106 at 5850.311 kb on - strand, within PFR28_05106 at 5850.311 kb on - strand, within PFR28_05106 at 5850.311 kb on - strand, within PFR28_05106 at 5850.311 kb on - strand, within PFR28_05106 at 5850.311 kb on - strand, within PFR28_05106 at 5850.311 kb on - strand, within PFR28_05106 at 5850.311 kb on - strand, within PFR28_05106 at 5850.311 kb on - strand, within PFR28_05106 at 5850.311 kb on - strand, within PFR28_05106 at 5850.311 kb on - strand, within PFR28_05106 at 5850.313 kb on + strand, within PFR28_05106 at 5850.313 kb on + strand, within PFR28_05106 at 5850.313 kb on + strand, within PFR28_05106 at 5850.313 kb on + strand, within PFR28_05106 at 5850.313 kb on + strand, within PFR28_05106 at 5850.313 kb on + strand, within PFR28_05106 at 5850.313 kb on + strand, within PFR28_05106 at 5850.313 kb on + strand, within PFR28_05106 at 5850.313 kb on + strand, within PFR28_05106 at 5850.313 kb on + strand, within PFR28_05106 at 5850.313 kb on + strand, within PFR28_05106 at 5850.314 kb on - strand, within PFR28_05106 at 5850.314 kb on - strand, within PFR28_05106 at 5850.314 kb on - strand, within PFR28_05106 at 5850.314 kb on - strand, within PFR28_05106 at 5850.397 kb on + strand at 5850.397 kb on + strand at 5850.398 kb on - strand at 5850.398 kb on - strand at 5850.398 kb on - strand at 5850.519 kb on + strand at 5850.519 kb on + strand at 5850.519 kb on + strand at 5850.520 kb on - strand at 5850.520 kb on - strand at 5850.591 kb on + strand at 5850.591 kb on + strand at 5850.591 kb on + strand at 5850.592 kb on - strand at 5850.592 kb on - strand at 5850.592 kb on - strand at 5850.592 kb on - strand at 5850.651 kb on - strand at 5851.540 kb on - strand at 5851.615 kb on + strand at 5851.615 kb on + strand at 5851.616 kb on - strand at 5851.657 kb on + strand, within PFR28_05108 at 5851.657 kb on + strand, within PFR28_05108 at 5851.657 kb on + strand, within PFR28_05108 at 5851.658 kb on - strand, within PFR28_05108 at 5851.658 kb on - strand, within PFR28_05108 at 5851.658 kb on - strand, within PFR28_05108 at 5851.658 kb on - strand, within PFR28_05108 at 5851.658 kb on - strand, within PFR28_05108 at 5851.658 kb on - strand, within PFR28_05108 at 5851.658 kb on - strand, within PFR28_05108 at 5851.658 kb on - strand, within PFR28_05108 at 5851.658 kb on - strand, within PFR28_05108 at 5851.856 kb on - strand, within PFR28_05108 at 5851.918 kb on + strand, within PFR28_05108 at 5851.984 kb on - strand, within PFR28_05108 at 5851.984 kb on - strand, within PFR28_05108 at 5852.042 kb on - strand, within PFR28_05108 at 5852.042 kb on - strand, within PFR28_05108 at 5852.047 kb on + strand, within PFR28_05108 at 5852.048 kb on - strand, within PFR28_05108 at 5852.048 kb on - strand, within PFR28_05108 at 5852.048 kb on - strand, within PFR28_05108 at 5852.048 kb on - strand, within PFR28_05108 at 5852.048 kb on - strand, within PFR28_05108 at 5852.048 kb on - strand, within PFR28_05108 at 5852.048 kb on - strand, within PFR28_05108 at 5852.048 kb on - strand, within PFR28_05108 at 5852.048 kb on - strand, within PFR28_05108 at 5852.048 kb on - strand, within PFR28_05108 at 5852.048 kb on - strand, within PFR28_05108 at 5852.117 kb on - strand, within PFR28_05108 at 5852.117 kb on - strand, within PFR28_05108 at 5852.126 kb on - strand, within PFR28_05108 at 5852.126 kb on - strand, within PFR28_05108 at 5852.126 kb on - strand, within PFR28_05108 at 5852.223 kb on - strand, within PFR28_05108 at 5852.223 kb on - strand, within PFR28_05108 at 5852.223 kb on - strand, within PFR28_05108 at 5852.410 kb on + strand at 5852.410 kb on + strand at 5852.410 kb on + strand at 5852.411 kb on - strand at 5852.411 kb on - strand at 5852.411 kb on - strand at 5852.459 kb on + strand at 5852.459 kb on + strand at 5852.459 kb on + strand at 5852.460 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-(+)-Galactosamine (C) 10 mM remove 5,849,880 + PFR28_05106 0.62 -0.6 5,849,880 + PFR28_05106 0.62 +1.7 5,849,880 + PFR28_05106 0.62 +0.2 5,849,938 + PFR28_05106 0.65 -1.9 5,849,938 + PFR28_05106 0.65 +1.3 5,849,938 + PFR28_05106 0.65 -1.5 5,849,938 + PFR28_05106 0.65 -1.1 5,849,938 + PFR28_05106 0.65 +0.4 5,849,938 + PFR28_05106 0.65 -0.2 5,849,938 + PFR28_05106 0.65 -1.1 5,849,939 - PFR28_05106 0.66 +1.3 5,849,939 - PFR28_05106 0.66 -0.3 5,849,939 - PFR28_05106 0.66 -1.6 5,849,939 - PFR28_05106 0.66 +1.1 5,849,939 - PFR28_05106 0.66 -0.3 5,849,939 - PFR28_05106 0.66 +0.0 5,849,939 - PFR28_05106 0.66 +0.3 5,849,939 - PFR28_05106 0.66 -1.5 5,849,939 - PFR28_05106 0.66 -0.0 5,849,939 - PFR28_05106 0.66 +0.9 5,849,939 - PFR28_05106 0.66 -0.2 5,849,939 - PFR28_05106 0.66 -0.3 5,850,028 + PFR28_05106 0.71 -1.5 5,850,029 - PFR28_05106 0.71 -1.5 5,850,029 - PFR28_05106 0.71 +0.1 5,850,073 + PFR28_05106 0.73 -1.3 5,850,073 + PFR28_05106 0.73 +0.9 5,850,074 - PFR28_05106 0.73 -0.3 5,850,074 - PFR28_05106 0.73 -0.6 5,850,074 - PFR28_05106 0.73 -0.1 5,850,074 - PFR28_05106 0.73 +0.5 5,850,196 + PFR28_05106 0.80 -0.5 5,850,196 + PFR28_05106 0.80 +0.7 5,850,196 + PFR28_05106 0.80 +1.6 5,850,196 + PFR28_05106 0.80 -0.2 5,850,310 + PFR28_05106 0.87 +3.0 5,850,310 + PFR28_05106 0.87 +1.7 5,850,310 + PFR28_05106 0.87 -1.0 5,850,310 + PFR28_05106 0.87 +0.6 5,850,311 - PFR28_05106 0.87 +0.0 5,850,311 - PFR28_05106 0.87 -0.8 5,850,311 - PFR28_05106 0.87 +0.5 5,850,311 - PFR28_05106 0.87 -0.8 5,850,311 - PFR28_05106 0.87 -1.0 5,850,311 - PFR28_05106 0.87 -1.7 5,850,311 - PFR28_05106 0.87 -0.5 5,850,311 - PFR28_05106 0.87 +0.2 5,850,311 - PFR28_05106 0.87 +0.9 5,850,311 - PFR28_05106 0.87 -0.3 5,850,313 + PFR28_05106 0.87 +0.0 5,850,313 + PFR28_05106 0.87 -0.1 5,850,313 + PFR28_05106 0.87 -1.1 5,850,313 + PFR28_05106 0.87 -0.6 5,850,313 + PFR28_05106 0.87 +0.1 5,850,313 + PFR28_05106 0.87 -1.9 5,850,313 + PFR28_05106 0.87 -2.7 5,850,313 + PFR28_05106 0.87 -0.5 5,850,313 + PFR28_05106 0.87 +0.2 5,850,313 + PFR28_05106 0.87 -0.1 5,850,313 + PFR28_05106 0.87 -0.9 5,850,314 - PFR28_05106 0.87 -0.4 5,850,314 - PFR28_05106 0.87 -0.4 5,850,314 - PFR28_05106 0.87 +0.6 5,850,314 - PFR28_05106 0.87 +1.2 5,850,397 + -1.8 5,850,397 + +1.4 5,850,398 - +1.1 5,850,398 - +1.7 5,850,398 - -1.4 5,850,519 + +0.3 5,850,519 + -0.2 5,850,519 + -0.0 5,850,520 - -0.6 5,850,520 - -0.5 5,850,591 + -0.3 5,850,591 + +1.5 5,850,591 + +0.1 5,850,592 - -1.6 5,850,592 - +1.3 5,850,592 - +0.5 5,850,592 - -0.3 5,850,651 - -0.1 5,851,540 - +1.7 5,851,615 + +1.7 5,851,615 + -0.3 5,851,616 - -0.3 5,851,657 + PFR28_05108 0.12 +0.3 5,851,657 + PFR28_05108 0.12 -0.1 5,851,657 + PFR28_05108 0.12 -2.8 5,851,658 - PFR28_05108 0.12 -1.5 5,851,658 - PFR28_05108 0.12 -3.2 5,851,658 - PFR28_05108 0.12 -2.0 5,851,658 - PFR28_05108 0.12 -0.4 5,851,658 - PFR28_05108 0.12 -0.3 5,851,658 - PFR28_05108 0.12 +0.0 5,851,658 - PFR28_05108 0.12 -0.4 5,851,658 - PFR28_05108 0.12 -2.6 5,851,658 - PFR28_05108 0.12 +0.7 5,851,856 - PFR28_05108 0.36 -1.6 5,851,918 + PFR28_05108 0.44 -0.6 5,851,984 - PFR28_05108 0.52 -1.0 5,851,984 - PFR28_05108 0.52 -0.6 5,852,042 - PFR28_05108 0.59 -2.3 5,852,042 - PFR28_05108 0.59 +0.2 5,852,047 + PFR28_05108 0.60 +0.7 5,852,048 - PFR28_05108 0.60 -1.3 5,852,048 - PFR28_05108 0.60 -1.0 5,852,048 - PFR28_05108 0.60 -3.3 5,852,048 - PFR28_05108 0.60 -0.1 5,852,048 - PFR28_05108 0.60 +0.6 5,852,048 - PFR28_05108 0.60 -0.2 5,852,048 - PFR28_05108 0.60 -0.4 5,852,048 - PFR28_05108 0.60 -0.2 5,852,048 - PFR28_05108 0.60 -2.9 5,852,048 - PFR28_05108 0.60 +2.0 5,852,048 - PFR28_05108 0.60 +0.7 5,852,117 - PFR28_05108 0.68 +0.3 5,852,117 - PFR28_05108 0.68 -0.4 5,852,126 - PFR28_05108 0.69 +1.4 5,852,126 - PFR28_05108 0.69 +1.0 5,852,126 - PFR28_05108 0.69 +0.3 5,852,223 - PFR28_05108 0.81 -0.3 5,852,223 - PFR28_05108 0.81 +0.3 5,852,223 - PFR28_05108 0.81 -0.5 5,852,410 + +0.9 5,852,410 + -1.3 5,852,410 + +0.4 5,852,411 - +0.3 5,852,411 - -0.8 5,852,411 - -1.3 5,852,459 + +0.9 5,852,459 + +0.6 5,852,459 + +0.5 5,852,460 - +0.2
Or see this region's nucleotide sequence