Experiment: D-(+)-Galactosamine (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_04938 and PFR28_04939 are separated by 151 nucleotides PFR28_04939 and PFR28_04940 are separated by 1 nucleotides PFR28_04940 and PFR28_04941 are separated by 38 nucleotides PFR28_04941 and PFR28_04942 are separated by 103 nucleotides
PFR28_04938: PFR28_04938 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, at 5,630,566 to 5,632,095
_04938
PFR28_04939: PFR28_04939 - putative protein YibN, at 5,632,247 to 5,632,660
_04939
PFR28_04940: PFR28_04940 - Glutaredoxin 3, at 5,632,662 to 5,632,916
_04940
PFR28_04941: PFR28_04941 - Protein-export protein SecB, at 5,632,955 to 5,633,437
_04941
PFR28_04942: PFR28_04942 - 'tRNA (cytidine(34)-2'-O)-methyltransferase' transl_table=11, at 5,633,541 to 5,633,996
_04942
Position (kb) 5632
5633 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5632.090 kb on - strand at 5632.090 kb on - strand at 5632.090 kb on - strand at 5632.154 kb on + strand at 5632.154 kb on + strand at 5632.154 kb on + strand at 5632.154 kb on + strand at 5632.155 kb on - strand at 5632.155 kb on - strand at 5632.155 kb on - strand at 5632.208 kb on + strand at 5632.208 kb on + strand at 5632.208 kb on + strand at 5632.208 kb on + strand at 5632.208 kb on + strand at 5632.208 kb on + strand at 5632.209 kb on - strand at 5632.209 kb on - strand at 5632.209 kb on - strand at 5632.209 kb on - strand at 5632.210 kb on + strand at 5632.210 kb on + strand at 5632.210 kb on + strand at 5632.211 kb on - strand at 5632.211 kb on - strand at 5632.283 kb on + strand at 5632.284 kb on - strand at 5632.333 kb on + strand, within PFR28_04939 at 5632.333 kb on + strand, within PFR28_04939 at 5632.333 kb on + strand, within PFR28_04939 at 5632.333 kb on + strand, within PFR28_04939 at 5632.334 kb on - strand, within PFR28_04939 at 5632.334 kb on - strand, within PFR28_04939 at 5632.334 kb on - strand, within PFR28_04939 at 5632.414 kb on + strand, within PFR28_04939 at 5632.492 kb on + strand, within PFR28_04939 at 5632.680 kb on + strand at 5632.680 kb on + strand at 5632.681 kb on - strand at 5632.693 kb on - strand, within PFR28_04940 at 5632.693 kb on - strand, within PFR28_04940 at 5632.701 kb on + strand, within PFR28_04940 at 5632.701 kb on + strand, within PFR28_04940 at 5632.702 kb on - strand, within PFR28_04940 at 5632.702 kb on - strand, within PFR28_04940 at 5632.811 kb on + strand, within PFR28_04940 at 5632.811 kb on + strand, within PFR28_04940 at 5632.811 kb on + strand, within PFR28_04940 at 5632.811 kb on + strand, within PFR28_04940 at 5632.811 kb on + strand, within PFR28_04940 at 5632.811 kb on + strand, within PFR28_04940 at 5632.811 kb on + strand, within PFR28_04940 at 5632.811 kb on + strand, within PFR28_04940 at 5632.812 kb on - strand, within PFR28_04940 at 5632.812 kb on - strand, within PFR28_04940 at 5632.812 kb on - strand, within PFR28_04940 at 5632.812 kb on - strand, within PFR28_04940 at 5632.812 kb on - strand, within PFR28_04940 at 5632.812 kb on - strand, within PFR28_04940 at 5632.812 kb on - strand, within PFR28_04940 at 5632.812 kb on - strand, within PFR28_04940 at 5632.869 kb on + strand, within PFR28_04940 at 5632.869 kb on + strand, within PFR28_04940 at 5632.870 kb on - strand, within PFR28_04940 at 5632.926 kb on + strand at 5632.926 kb on + strand at 5632.926 kb on + strand at 5632.926 kb on + strand at 5632.926 kb on + strand at 5632.926 kb on + strand at 5632.926 kb on + strand at 5632.926 kb on + strand at 5632.927 kb on - strand at 5632.927 kb on - strand at 5632.927 kb on - strand at 5632.927 kb on - strand at 5632.927 kb on - strand at 5632.927 kb on - strand at 5632.927 kb on - strand at 5632.927 kb on - strand at 5632.927 kb on - strand at 5632.927 kb on - strand at 5632.927 kb on - strand at 5632.927 kb on - strand at 5632.927 kb on - strand at 5632.927 kb on - strand at 5632.927 kb on - strand at 5632.927 kb on - strand at 5632.927 kb on - strand at 5633.024 kb on + strand, within PFR28_04941 at 5633.024 kb on + strand, within PFR28_04941 at 5633.024 kb on + strand, within PFR28_04941 at 5633.024 kb on + strand, within PFR28_04941 at 5633.024 kb on + strand, within PFR28_04941 at 5633.024 kb on + strand, within PFR28_04941 at 5633.024 kb on + strand, within PFR28_04941 at 5633.024 kb on + strand, within PFR28_04941 at 5633.024 kb on + strand, within PFR28_04941 at 5633.024 kb on + strand, within PFR28_04941 at 5633.025 kb on - strand, within PFR28_04941 at 5633.025 kb on - strand, within PFR28_04941 at 5633.025 kb on - strand, within PFR28_04941 at 5633.025 kb on - strand, within PFR28_04941 at 5633.025 kb on - strand, within PFR28_04941 at 5633.028 kb on + strand, within PFR28_04941 at 5633.028 kb on + strand, within PFR28_04941 at 5633.029 kb on - strand, within PFR28_04941 at 5633.029 kb on - strand, within PFR28_04941 at 5633.029 kb on - strand, within PFR28_04941 at 5633.029 kb on - strand, within PFR28_04941 at 5633.095 kb on - strand, within PFR28_04941 at 5633.263 kb on + strand, within PFR28_04941 at 5633.384 kb on + strand, within PFR28_04941 at 5633.385 kb on - strand, within PFR28_04941 at 5633.836 kb on + strand, within PFR28_04942 at 5633.836 kb on + strand, within PFR28_04942 at 5633.836 kb on + strand, within PFR28_04942 at 5633.836 kb on + strand, within PFR28_04942 at 5633.837 kb on - strand, within PFR28_04942 at 5633.837 kb on - strand, within PFR28_04942 at 5633.837 kb on - strand, within PFR28_04942 at 5633.845 kb on + strand, within PFR28_04942 at 5633.846 kb on - strand, within PFR28_04942 at 5633.846 kb on - strand, within PFR28_04942 at 5633.846 kb on - strand, within PFR28_04942
Per-strain Table
Position Strand Gene LocusTag Fraction D-(+)-Galactosamine (C) 10 mM remove 5,632,090 - -0.3 5,632,090 - +0.7 5,632,090 - -0.8 5,632,154 + +0.1 5,632,154 + +0.2 5,632,154 + -2.2 5,632,154 + +1.1 5,632,155 - +0.0 5,632,155 - -0.3 5,632,155 - +0.2 5,632,208 + -1.0 5,632,208 + +0.6 5,632,208 + +0.9 5,632,208 + -0.2 5,632,208 + +0.5 5,632,208 + -1.7 5,632,209 - -0.1 5,632,209 - +0.4 5,632,209 - +0.7 5,632,209 - -0.6 5,632,210 + +0.5 5,632,210 + -0.2 5,632,210 + +0.9 5,632,211 - +1.3 5,632,211 - +0.2 5,632,283 + -2.8 5,632,284 - +0.1 5,632,333 + PFR28_04939 0.21 -2.0 5,632,333 + PFR28_04939 0.21 -1.5 5,632,333 + PFR28_04939 0.21 -0.6 5,632,333 + PFR28_04939 0.21 -1.6 5,632,334 - PFR28_04939 0.21 +0.8 5,632,334 - PFR28_04939 0.21 -2.9 5,632,334 - PFR28_04939 0.21 -0.6 5,632,414 + PFR28_04939 0.40 +0.4 5,632,492 + PFR28_04939 0.59 -0.2 5,632,680 + -0.3 5,632,680 + -0.9 5,632,681 - +1.9 5,632,693 - PFR28_04940 0.12 -0.8 5,632,693 - PFR28_04940 0.12 -0.6 5,632,701 + PFR28_04940 0.15 -1.1 5,632,701 + PFR28_04940 0.15 -0.6 5,632,702 - PFR28_04940 0.16 +0.7 5,632,702 - PFR28_04940 0.16 +2.0 5,632,811 + PFR28_04940 0.58 +1.1 5,632,811 + PFR28_04940 0.58 -0.3 5,632,811 + PFR28_04940 0.58 -0.4 5,632,811 + PFR28_04940 0.58 +0.1 5,632,811 + PFR28_04940 0.58 +0.4 5,632,811 + PFR28_04940 0.58 -1.6 5,632,811 + PFR28_04940 0.58 +0.7 5,632,811 + PFR28_04940 0.58 +0.6 5,632,812 - PFR28_04940 0.59 +1.1 5,632,812 - PFR28_04940 0.59 -2.7 5,632,812 - PFR28_04940 0.59 +0.7 5,632,812 - PFR28_04940 0.59 -0.5 5,632,812 - PFR28_04940 0.59 +1.1 5,632,812 - PFR28_04940 0.59 -0.1 5,632,812 - PFR28_04940 0.59 +1.4 5,632,812 - PFR28_04940 0.59 +1.4 5,632,869 + PFR28_04940 0.81 -1.5 5,632,869 + PFR28_04940 0.81 +1.1 5,632,870 - PFR28_04940 0.82 -1.8 5,632,926 + -2.7 5,632,926 + +0.1 5,632,926 + -0.1 5,632,926 + +0.1 5,632,926 + -0.5 5,632,926 + -0.6 5,632,926 + -0.5 5,632,926 + +1.6 5,632,927 - -1.8 5,632,927 - -0.9 5,632,927 - -1.8 5,632,927 - -0.5 5,632,927 - -1.3 5,632,927 - +0.7 5,632,927 - -0.6 5,632,927 - -2.0 5,632,927 - -0.3 5,632,927 - +0.4 5,632,927 - +1.7 5,632,927 - +0.7 5,632,927 - -2.0 5,632,927 - +0.1 5,632,927 - +0.6 5,632,927 - +1.7 5,632,927 - -0.3 5,633,024 + PFR28_04941 0.14 +0.7 5,633,024 + PFR28_04941 0.14 -0.6 5,633,024 + PFR28_04941 0.14 -0.9 5,633,024 + PFR28_04941 0.14 +0.1 5,633,024 + PFR28_04941 0.14 -0.3 5,633,024 + PFR28_04941 0.14 +0.1 5,633,024 + PFR28_04941 0.14 -1.3 5,633,024 + PFR28_04941 0.14 +0.1 5,633,024 + PFR28_04941 0.14 +0.7 5,633,024 + PFR28_04941 0.14 -0.6 5,633,025 - PFR28_04941 0.14 -0.9 5,633,025 - PFR28_04941 0.14 -0.3 5,633,025 - PFR28_04941 0.14 +0.7 5,633,025 - PFR28_04941 0.14 -1.3 5,633,025 - PFR28_04941 0.14 -0.6 5,633,028 + PFR28_04941 0.15 +0.1 5,633,028 + PFR28_04941 0.15 +0.1 5,633,029 - PFR28_04941 0.15 +0.7 5,633,029 - PFR28_04941 0.15 -0.9 5,633,029 - PFR28_04941 0.15 -0.9 5,633,029 - PFR28_04941 0.15 -1.6 5,633,095 - PFR28_04941 0.29 +1.3 5,633,263 + PFR28_04941 0.64 +1.7 5,633,384 + PFR28_04941 0.89 -1.5 5,633,385 - PFR28_04941 0.89 +0.7 5,633,836 + PFR28_04942 0.65 -0.9 5,633,836 + PFR28_04942 0.65 +1.0 5,633,836 + PFR28_04942 0.65 -0.3 5,633,836 + PFR28_04942 0.65 +0.7 5,633,837 - PFR28_04942 0.65 -0.4 5,633,837 - PFR28_04942 0.65 +0.1 5,633,837 - PFR28_04942 0.65 -1.5 5,633,845 + PFR28_04942 0.67 -1.2 5,633,846 - PFR28_04942 0.67 -1.0 5,633,846 - PFR28_04942 0.67 +0.5 5,633,846 - PFR28_04942 0.67 -0.4
Or see this region's nucleotide sequence