Strain Fitness in Pseudomonas sp. RS175 around PFR28_04799

Experiment: D-(+)-Galactosamine (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_04798 and PFR28_04799 overlap by 20 nucleotidesPFR28_04799 and PFR28_04800 are separated by 479 nucleotides PFR28_04798: PFR28_04798 - putative efflux pump outer membrane protein TtgC, at 5,477,894 to 5,479,369 _04798 PFR28_04799: PFR28_04799 - 6-hydroxy-3-succinoylpyridine 3-monooxygenase HspA, at 5,479,350 to 5,480,039 _04799 PFR28_04800: PFR28_04800 - Multidrug resistance protein MdtA, at 5,480,519 to 5,481,298 _04800 Position (kb) 5479 5480 5481Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5478.458 kb on + strand, within PFR28_04798at 5478.458 kb on + strand, within PFR28_04798at 5478.459 kb on - strand, within PFR28_04798at 5478.459 kb on - strand, within PFR28_04798at 5478.459 kb on - strand, within PFR28_04798at 5478.538 kb on + strand, within PFR28_04798at 5478.538 kb on + strand, within PFR28_04798at 5478.538 kb on + strand, within PFR28_04798at 5478.868 kb on + strand, within PFR28_04798at 5478.869 kb on - strand, within PFR28_04798at 5478.869 kb on - strand, within PFR28_04798at 5478.871 kb on + strand, within PFR28_04798at 5478.871 kb on + strand, within PFR28_04798at 5478.871 kb on + strand, within PFR28_04798at 5478.871 kb on + strand, within PFR28_04798at 5478.871 kb on + strand, within PFR28_04798at 5478.871 kb on + strand, within PFR28_04798at 5478.872 kb on - strand, within PFR28_04798at 5478.872 kb on - strand, within PFR28_04798at 5478.872 kb on - strand, within PFR28_04798at 5478.872 kb on - strand, within PFR28_04798at 5478.872 kb on - strand, within PFR28_04798at 5478.872 kb on - strand, within PFR28_04798at 5478.872 kb on - strand, within PFR28_04798at 5479.097 kb on + strand, within PFR28_04798at 5479.097 kb on + strand, within PFR28_04798at 5479.098 kb on - strand, within PFR28_04798at 5479.098 kb on - strand, within PFR28_04798at 5479.181 kb on + strand, within PFR28_04798at 5479.181 kb on + strand, within PFR28_04798at 5479.181 kb on + strand, within PFR28_04798at 5479.181 kb on + strand, within PFR28_04798at 5479.181 kb on + strand, within PFR28_04798at 5479.181 kb on + strand, within PFR28_04798at 5479.181 kb on + strand, within PFR28_04798at 5479.181 kb on + strand, within PFR28_04798at 5479.181 kb on + strand, within PFR28_04798at 5479.181 kb on + strand, within PFR28_04798at 5479.181 kb on + strand, within PFR28_04798at 5479.181 kb on + strand, within PFR28_04798at 5479.182 kb on - strand, within PFR28_04798at 5479.182 kb on - strand, within PFR28_04798at 5479.182 kb on - strand, within PFR28_04798at 5479.182 kb on - strand, within PFR28_04798at 5479.182 kb on - strand, within PFR28_04798at 5479.182 kb on - strand, within PFR28_04798at 5479.298 kb on + strandat 5479.298 kb on + strandat 5479.298 kb on + strandat 5479.299 kb on - strandat 5479.299 kb on - strandat 5479.299 kb on - strandat 5479.299 kb on - strandat 5479.299 kb on - strandat 5479.459 kb on + strand, within PFR28_04799at 5479.459 kb on + strand, within PFR28_04799at 5479.459 kb on + strand, within PFR28_04799at 5479.459 kb on + strand, within PFR28_04799at 5479.459 kb on + strand, within PFR28_04799at 5479.460 kb on - strand, within PFR28_04799at 5479.460 kb on - strand, within PFR28_04799at 5479.460 kb on - strand, within PFR28_04799at 5479.460 kb on - strand, within PFR28_04799at 5479.512 kb on + strand, within PFR28_04799at 5479.513 kb on - strand, within PFR28_04799at 5479.513 kb on - strand, within PFR28_04799at 5479.513 kb on - strand, within PFR28_04799at 5479.556 kb on + strand, within PFR28_04799at 5479.557 kb on - strand, within PFR28_04799at 5479.651 kb on + strand, within PFR28_04799at 5479.651 kb on + strand, within PFR28_04799at 5479.651 kb on + strand, within PFR28_04799at 5479.652 kb on - strand, within PFR28_04799at 5479.652 kb on - strand, within PFR28_04799at 5479.652 kb on - strand, within PFR28_04799at 5479.652 kb on - strand, within PFR28_04799at 5479.652 kb on - strand, within PFR28_04799at 5479.652 kb on - strand, within PFR28_04799at 5479.652 kb on - strand, within PFR28_04799at 5479.652 kb on - strand, within PFR28_04799at 5479.665 kb on + strand, within PFR28_04799at 5479.665 kb on + strand, within PFR28_04799at 5479.665 kb on + strand, within PFR28_04799at 5479.665 kb on + strand, within PFR28_04799at 5479.665 kb on + strand, within PFR28_04799at 5479.665 kb on + strand, within PFR28_04799at 5479.665 kb on + strand, within PFR28_04799at 5479.665 kb on + strand, within PFR28_04799at 5479.665 kb on + strand, within PFR28_04799at 5479.666 kb on - strand, within PFR28_04799at 5479.666 kb on - strand, within PFR28_04799at 5479.666 kb on - strand, within PFR28_04799at 5479.666 kb on - strand, within PFR28_04799at 5479.666 kb on - strand, within PFR28_04799at 5479.666 kb on - strand, within PFR28_04799at 5479.667 kb on + strand, within PFR28_04799at 5479.667 kb on + strand, within PFR28_04799at 5479.667 kb on + strand, within PFR28_04799at 5479.667 kb on + strand, within PFR28_04799at 5479.668 kb on - strand, within PFR28_04799at 5479.668 kb on - strand, within PFR28_04799at 5479.668 kb on - strand, within PFR28_04799at 5479.668 kb on - strand, within PFR28_04799at 5479.704 kb on - strand, within PFR28_04799at 5479.739 kb on + strand, within PFR28_04799at 5479.740 kb on - strand, within PFR28_04799at 5479.740 kb on - strand, within PFR28_04799at 5479.787 kb on - strand, within PFR28_04799at 5479.812 kb on + strand, within PFR28_04799at 5479.823 kb on + strand, within PFR28_04799at 5479.823 kb on + strand, within PFR28_04799at 5479.823 kb on + strand, within PFR28_04799at 5479.824 kb on - strand, within PFR28_04799at 5479.824 kb on - strand, within PFR28_04799at 5479.824 kb on - strand, within PFR28_04799at 5479.824 kb on - strand, within PFR28_04799at 5479.825 kb on + strand, within PFR28_04799at 5479.825 kb on + strand, within PFR28_04799at 5479.825 kb on + strand, within PFR28_04799at 5479.825 kb on + strand, within PFR28_04799at 5479.825 kb on + strand, within PFR28_04799at 5479.825 kb on + strand, within PFR28_04799at 5479.825 kb on + strand, within PFR28_04799at 5479.826 kb on - strand, within PFR28_04799at 5479.826 kb on - strand, within PFR28_04799at 5479.826 kb on - strand, within PFR28_04799at 5479.826 kb on - strand, within PFR28_04799at 5479.826 kb on - strand, within PFR28_04799at 5479.826 kb on - strand, within PFR28_04799at 5479.826 kb on - strand, within PFR28_04799at 5479.826 kb on - strand, within PFR28_04799at 5479.826 kb on - strand, within PFR28_04799at 5479.826 kb on - strand, within PFR28_04799at 5479.894 kb on + strand, within PFR28_04799at 5479.894 kb on + strand, within PFR28_04799at 5479.894 kb on + strand, within PFR28_04799at 5479.895 kb on - strand, within PFR28_04799at 5479.895 kb on - strand, within PFR28_04799at 5479.895 kb on - strand, within PFR28_04799at 5479.938 kb on + strand, within PFR28_04799at 5479.938 kb on + strand, within PFR28_04799at 5479.939 kb on - strand, within PFR28_04799at 5479.939 kb on - strand, within PFR28_04799at 5479.939 kb on - strand, within PFR28_04799at 5479.950 kb on + strand, within PFR28_04799at 5479.951 kb on - strand, within PFR28_04799at 5479.951 kb on - strand, within PFR28_04799at 5479.951 kb on - strand, within PFR28_04799at 5479.975 kb on + strandat 5479.975 kb on + strandat 5479.975 kb on + strandat 5479.976 kb on - strandat 5479.976 kb on - strandat 5479.999 kb on + strandat 5479.999 kb on + strandat 5480.000 kb on - strandat 5480.011 kb on + strandat 5480.011 kb on + strandat 5480.011 kb on + strandat 5480.011 kb on + strandat 5480.011 kb on + strandat 5480.012 kb on - strandat 5480.012 kb on - strandat 5480.107 kb on + strandat 5480.107 kb on + strandat 5480.107 kb on + strandat 5480.107 kb on + strandat 5480.144 kb on + strandat 5480.145 kb on - strandat 5480.161 kb on + strandat 5480.161 kb on + strandat 5480.161 kb on + strandat 5480.161 kb on + strandat 5480.161 kb on + strandat 5480.162 kb on - strandat 5480.162 kb on - strandat 5480.263 kb on + strandat 5480.263 kb on + strandat 5480.263 kb on + strandat 5480.263 kb on + strandat 5480.263 kb on + strandat 5480.263 kb on + strandat 5480.263 kb on + strandat 5480.264 kb on - strandat 5480.264 kb on - strandat 5480.298 kb on + strandat 5480.299 kb on - strandat 5480.299 kb on - strandat 5480.322 kb on + strandat 5480.322 kb on + strandat 5480.323 kb on - strandat 5480.368 kb on + strandat 5480.369 kb on - strandat 5480.389 kb on - strandat 5480.389 kb on - strandat 5480.412 kb on + strandat 5480.413 kb on - strandat 5480.518 kb on + strandat 5480.518 kb on + strandat 5480.534 kb on - strandat 5480.560 kb on - strandat 5480.707 kb on + strand, within PFR28_04800at 5480.707 kb on + strand, within PFR28_04800at 5480.708 kb on - strand, within PFR28_04800at 5480.708 kb on - strand, within PFR28_04800at 5480.708 kb on - strand, within PFR28_04800at 5480.783 kb on + strand, within PFR28_04800at 5480.939 kb on + strand, within PFR28_04800at 5480.940 kb on - strand, within PFR28_04800at 5480.940 kb on - strand, within PFR28_04800

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Per-strain Table

Position Strand Gene LocusTag Fraction D-(+)-Galactosamine (C) 10 mM
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5,478,458 + PFR28_04798 0.38 +0.1
5,478,458 + PFR28_04798 0.38 +1.8
5,478,459 - PFR28_04798 0.38 -3.5
5,478,459 - PFR28_04798 0.38 -0.7
5,478,459 - PFR28_04798 0.38 -1.2
5,478,538 + PFR28_04798 0.44 +0.5
5,478,538 + PFR28_04798 0.44 +0.8
5,478,538 + PFR28_04798 0.44 -2.2
5,478,868 + PFR28_04798 0.66 +0.3
5,478,869 - PFR28_04798 0.66 +1.0
5,478,869 - PFR28_04798 0.66 +0.5
5,478,871 + PFR28_04798 0.66 -1.4
5,478,871 + PFR28_04798 0.66 -1.2
5,478,871 + PFR28_04798 0.66 +0.2
5,478,871 + PFR28_04798 0.66 -0.7
5,478,871 + PFR28_04798 0.66 -1.1
5,478,871 + PFR28_04798 0.66 +0.9
5,478,872 - PFR28_04798 0.66 -1.9
5,478,872 - PFR28_04798 0.66 -0.6
5,478,872 - PFR28_04798 0.66 -1.1
5,478,872 - PFR28_04798 0.66 -0.2
5,478,872 - PFR28_04798 0.66 -1.9
5,478,872 - PFR28_04798 0.66 -0.9
5,478,872 - PFR28_04798 0.66 +0.1
5,479,097 + PFR28_04798 0.82 -2.9
5,479,097 + PFR28_04798 0.82 -0.2
5,479,098 - PFR28_04798 0.82 +0.8
5,479,098 - PFR28_04798 0.82 +0.7
5,479,181 + PFR28_04798 0.87 +0.6
5,479,181 + PFR28_04798 0.87 -1.3
5,479,181 + PFR28_04798 0.87 -0.0
5,479,181 + PFR28_04798 0.87 -2.4
5,479,181 + PFR28_04798 0.87 -1.1
5,479,181 + PFR28_04798 0.87 +0.5
5,479,181 + PFR28_04798 0.87 +0.9
5,479,181 + PFR28_04798 0.87 -2.1
5,479,181 + PFR28_04798 0.87 +1.7
5,479,181 + PFR28_04798 0.87 +0.3
5,479,181 + PFR28_04798 0.87 +0.3
5,479,181 + PFR28_04798 0.87 +0.3
5,479,182 - PFR28_04798 0.87 +0.8
5,479,182 - PFR28_04798 0.87 +1.2
5,479,182 - PFR28_04798 0.87 -0.6
5,479,182 - PFR28_04798 0.87 +0.7
5,479,182 - PFR28_04798 0.87 -1.1
5,479,182 - PFR28_04798 0.87 -3.1
5,479,298 + +0.3
5,479,298 + -0.3
5,479,298 + +0.7
5,479,299 - -0.4
5,479,299 - +0.4
5,479,299 - -2.6
5,479,299 - +0.2
5,479,299 - -1.7
5,479,459 + PFR28_04799 0.16 -0.5
5,479,459 + PFR28_04799 0.16 +0.3
5,479,459 + PFR28_04799 0.16 -2.4
5,479,459 + PFR28_04799 0.16 +1.4
5,479,459 + PFR28_04799 0.16 -1.4
5,479,460 - PFR28_04799 0.16 +0.1
5,479,460 - PFR28_04799 0.16 -0.6
5,479,460 - PFR28_04799 0.16 +0.1
5,479,460 - PFR28_04799 0.16 +1.1
5,479,512 + PFR28_04799 0.23 +0.3
5,479,513 - PFR28_04799 0.24 -0.5
5,479,513 - PFR28_04799 0.24 -0.1
5,479,513 - PFR28_04799 0.24 +0.3
5,479,556 + PFR28_04799 0.30 -0.0
5,479,557 - PFR28_04799 0.30 -1.5
5,479,651 + PFR28_04799 0.44 -1.9
5,479,651 + PFR28_04799 0.44 +1.0
5,479,651 + PFR28_04799 0.44 -0.5
5,479,652 - PFR28_04799 0.44 -1.3
5,479,652 - PFR28_04799 0.44 -0.3
5,479,652 - PFR28_04799 0.44 -0.2
5,479,652 - PFR28_04799 0.44 +0.9
5,479,652 - PFR28_04799 0.44 -1.6
5,479,652 - PFR28_04799 0.44 -0.6
5,479,652 - PFR28_04799 0.44 +0.2
5,479,652 - PFR28_04799 0.44 +0.6
5,479,665 + PFR28_04799 0.46 -1.8
5,479,665 + PFR28_04799 0.46 +0.5
5,479,665 + PFR28_04799 0.46 +0.1
5,479,665 + PFR28_04799 0.46 +0.4
5,479,665 + PFR28_04799 0.46 -2.9
5,479,665 + PFR28_04799 0.46 +0.3
5,479,665 + PFR28_04799 0.46 -0.1
5,479,665 + PFR28_04799 0.46 +0.5
5,479,665 + PFR28_04799 0.46 +1.2
5,479,666 - PFR28_04799 0.46 +0.1
5,479,666 - PFR28_04799 0.46 +0.2
5,479,666 - PFR28_04799 0.46 +0.8
5,479,666 - PFR28_04799 0.46 +1.2
5,479,666 - PFR28_04799 0.46 +0.1
5,479,666 - PFR28_04799 0.46 -0.5
5,479,667 + PFR28_04799 0.46 +0.0
5,479,667 + PFR28_04799 0.46 -0.1
5,479,667 + PFR28_04799 0.46 -0.3
5,479,667 + PFR28_04799 0.46 +1.7
5,479,668 - PFR28_04799 0.46 -0.2
5,479,668 - PFR28_04799 0.46 -0.1
5,479,668 - PFR28_04799 0.46 +0.3
5,479,668 - PFR28_04799 0.46 +0.7
5,479,704 - PFR28_04799 0.51 +2.7
5,479,739 + PFR28_04799 0.56 +0.1
5,479,740 - PFR28_04799 0.57 +0.6
5,479,740 - PFR28_04799 0.57 +0.8
5,479,787 - PFR28_04799 0.63 -0.6
5,479,812 + PFR28_04799 0.67 -0.9
5,479,823 + PFR28_04799 0.69 -0.1
5,479,823 + PFR28_04799 0.69 +0.2
5,479,823 + PFR28_04799 0.69 +0.5
5,479,824 - PFR28_04799 0.69 -0.5
5,479,824 - PFR28_04799 0.69 -1.6
5,479,824 - PFR28_04799 0.69 -1.0
5,479,824 - PFR28_04799 0.69 -0.3
5,479,825 + PFR28_04799 0.69 -1.4
5,479,825 + PFR28_04799 0.69 +0.9
5,479,825 + PFR28_04799 0.69 +0.9
5,479,825 + PFR28_04799 0.69 +0.6
5,479,825 + PFR28_04799 0.69 +0.9
5,479,825 + PFR28_04799 0.69 +1.2
5,479,825 + PFR28_04799 0.69 +0.1
5,479,826 - PFR28_04799 0.69 -0.4
5,479,826 - PFR28_04799 0.69 +0.9
5,479,826 - PFR28_04799 0.69 +1.0
5,479,826 - PFR28_04799 0.69 -0.3
5,479,826 - PFR28_04799 0.69 +0.4
5,479,826 - PFR28_04799 0.69 -0.1
5,479,826 - PFR28_04799 0.69 -0.6
5,479,826 - PFR28_04799 0.69 -1.6
5,479,826 - PFR28_04799 0.69 -1.6
5,479,826 - PFR28_04799 0.69 -0.8
5,479,894 + PFR28_04799 0.79 +0.5
5,479,894 + PFR28_04799 0.79 +0.7
5,479,894 + PFR28_04799 0.79 +1.1
5,479,895 - PFR28_04799 0.79 +2.1
5,479,895 - PFR28_04799 0.79 -0.1
5,479,895 - PFR28_04799 0.79 -1.6
5,479,938 + PFR28_04799 0.85 -1.1
5,479,938 + PFR28_04799 0.85 -1.0
5,479,939 - PFR28_04799 0.85 -0.7
5,479,939 - PFR28_04799 0.85 +1.5
5,479,939 - PFR28_04799 0.85 -0.8
5,479,950 + PFR28_04799 0.87 -1.8
5,479,951 - PFR28_04799 0.87 -0.4
5,479,951 - PFR28_04799 0.87 -1.9
5,479,951 - PFR28_04799 0.87 -0.1
5,479,975 + +0.2
5,479,975 + +0.1
5,479,975 + +1.1
5,479,976 - -2.4
5,479,976 - +1.2
5,479,999 + -0.9
5,479,999 + +0.5
5,480,000 - +0.3
5,480,011 + +0.8
5,480,011 + +1.5
5,480,011 + +1.4
5,480,011 + -0.2
5,480,011 + -0.9
5,480,012 - -0.8
5,480,012 - -2.7
5,480,107 + -0.1
5,480,107 + +0.8
5,480,107 + -0.3
5,480,107 + +1.2
5,480,144 + -0.6
5,480,145 - -2.8
5,480,161 + -1.0
5,480,161 + +0.8
5,480,161 + -0.1
5,480,161 + +1.1
5,480,161 + -0.4
5,480,162 - -0.0
5,480,162 - -1.0
5,480,263 + +0.0
5,480,263 + -0.3
5,480,263 + +0.9
5,480,263 + -0.8
5,480,263 + -1.8
5,480,263 + +0.1
5,480,263 + -1.1
5,480,264 - +2.7
5,480,264 - -1.1
5,480,298 + -0.7
5,480,299 - -1.2
5,480,299 - -0.7
5,480,322 + -1.6
5,480,322 + +0.1
5,480,323 - +0.6
5,480,368 + -1.8
5,480,369 - +0.3
5,480,389 - +0.9
5,480,389 - +0.8
5,480,412 + +0.1
5,480,413 - +0.2
5,480,518 + -2.5
5,480,518 + -1.1
5,480,534 - -0.3
5,480,560 - -1.3
5,480,707 + PFR28_04800 0.24 +1.3
5,480,707 + PFR28_04800 0.24 +0.0
5,480,708 - PFR28_04800 0.24 +0.4
5,480,708 - PFR28_04800 0.24 -0.1
5,480,708 - PFR28_04800 0.24 -0.8
5,480,783 + PFR28_04800 0.34 +0.3
5,480,939 + PFR28_04800 0.54 +0.6
5,480,940 - PFR28_04800 0.54 -0.9
5,480,940 - PFR28_04800 0.54 +2.1

Or see this region's nucleotide sequence