Experiment: D-(+)-Galactosamine (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00589 and PFR28_00590 are separated by 116 nucleotides PFR28_00590 and PFR28_00591 are separated by 102 nucleotides PFR28_00591 and PFR28_00592 are separated by 75 nucleotides PFR28_00592 and PFR28_00593 are separated by 167 nucleotides
PFR28_00589: PFR28_00589 - Peptide deformylase, at 630,749 to 631,288
_00589
PFR28_00590: PFR28_00590 - hypothetical protein, at 631,405 to 631,827
_00590
PFR28_00591: PFR28_00591 - hypothetical protein, at 631,930 to 632,040
_00591
PFR28_00592: PFR28_00592 - hypothetical protein, at 632,116 to 632,667
_00592
PFR28_00593: PFR28_00593 - HTH-type transcriptional regulator GntR, at 632,835 to 633,866
_00593
Position (kb) 631
632
633 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 631.089 kb on - strand, within PFR28_00589 at 631.104 kb on - strand, within PFR28_00589 at 631.206 kb on - strand, within PFR28_00589 at 631.487 kb on + strand, within PFR28_00590 at 631.526 kb on + strand, within PFR28_00590 at 631.626 kb on - strand, within PFR28_00590 at 631.766 kb on + strand, within PFR28_00590 at 631.767 kb on - strand, within PFR28_00590 at 631.812 kb on - strand at 631.860 kb on + strand at 631.861 kb on - strand at 631.862 kb on + strand at 631.862 kb on + strand at 631.863 kb on - strand at 631.863 kb on - strand at 631.863 kb on - strand at 631.884 kb on + strand at 631.884 kb on + strand at 631.885 kb on - strand at 631.885 kb on - strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.892 kb on + strand at 631.892 kb on + strand at 631.892 kb on + strand at 631.892 kb on + strand at 631.892 kb on + strand at 631.892 kb on + strand at 631.892 kb on + strand at 631.893 kb on - strand at 631.893 kb on - strand at 631.893 kb on - strand at 631.893 kb on - strand at 631.893 kb on - strand at 631.893 kb on - strand at 631.893 kb on - strand at 631.893 kb on - strand at 631.922 kb on + strand at 631.922 kb on + strand at 631.922 kb on + strand at 631.922 kb on + strand at 631.922 kb on + strand at 631.922 kb on + strand at 631.922 kb on + strand at 631.922 kb on + strand at 631.922 kb on + strand at 631.923 kb on - strand at 631.923 kb on - strand at 631.923 kb on - strand at 631.923 kb on - strand at 631.923 kb on - strand at 631.923 kb on - strand at 631.926 kb on + strand at 631.926 kb on + strand at 631.926 kb on + strand at 631.926 kb on + strand at 631.926 kb on + strand at 631.926 kb on + strand at 631.926 kb on + strand at 631.926 kb on + strand at 631.926 kb on + strand at 631.926 kb on + strand at 631.926 kb on + strand at 631.926 kb on + strand at 631.926 kb on + strand at 631.926 kb on + strand at 631.926 kb on + strand at 631.926 kb on + strand at 631.927 kb on - strand at 631.927 kb on - strand at 631.927 kb on - strand at 631.927 kb on - strand at 631.927 kb on - strand at 631.927 kb on - strand at 631.927 kb on - strand at 631.927 kb on - strand at 631.927 kb on - strand at 631.927 kb on - strand at 631.927 kb on - strand at 631.927 kb on - strand at 632.137 kb on - strand at 632.137 kb on - strand at 632.304 kb on + strand, within PFR28_00592 at 632.304 kb on + strand, within PFR28_00592 at 632.304 kb on + strand, within PFR28_00592 at 632.304 kb on + strand, within PFR28_00592 at 632.304 kb on + strand, within PFR28_00592 at 632.305 kb on - strand, within PFR28_00592 at 632.305 kb on - strand, within PFR28_00592 at 632.305 kb on - strand, within PFR28_00592 at 632.305 kb on - strand, within PFR28_00592 at 632.305 kb on - strand, within PFR28_00592 at 632.305 kb on - strand, within PFR28_00592 at 632.342 kb on + strand, within PFR28_00592 at 632.342 kb on + strand, within PFR28_00592 at 632.342 kb on + strand, within PFR28_00592 at 632.342 kb on + strand, within PFR28_00592 at 632.342 kb on + strand, within PFR28_00592 at 632.342 kb on + strand, within PFR28_00592 at 632.342 kb on + strand, within PFR28_00592 at 632.342 kb on + strand, within PFR28_00592 at 632.342 kb on + strand, within PFR28_00592 at 632.342 kb on + strand, within PFR28_00592 at 632.342 kb on + strand, within PFR28_00592 at 632.343 kb on - strand, within PFR28_00592 at 632.343 kb on - strand, within PFR28_00592 at 632.343 kb on - strand, within PFR28_00592 at 632.343 kb on - strand, within PFR28_00592 at 632.343 kb on - strand, within PFR28_00592 at 632.343 kb on - strand, within PFR28_00592 at 632.343 kb on - strand, within PFR28_00592 at 632.419 kb on + strand, within PFR28_00592 at 632.420 kb on - strand, within PFR28_00592 at 632.420 kb on - strand, within PFR28_00592 at 632.420 kb on - strand, within PFR28_00592 at 632.420 kb on - strand, within PFR28_00592 at 632.500 kb on - strand, within PFR28_00592 at 632.637 kb on + strand at 632.637 kb on + strand at 632.637 kb on + strand at 632.638 kb on - strand at 632.680 kb on + strand at 632.680 kb on + strand at 632.680 kb on + strand at 632.680 kb on + strand at 632.680 kb on + strand at 632.680 kb on + strand at 632.681 kb on - strand at 632.681 kb on - strand at 632.681 kb on - strand at 632.681 kb on - strand at 632.681 kb on - strand at 632.681 kb on - strand at 632.684 kb on + strand at 632.684 kb on + strand at 632.684 kb on + strand at 632.684 kb on + strand at 632.684 kb on + strand at 632.685 kb on - strand at 632.756 kb on + strand at 632.756 kb on + strand at 632.756 kb on + strand at 632.757 kb on - strand at 632.757 kb on - strand at 632.757 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-(+)-Galactosamine (C) 10 mM remove 631,089 - PFR28_00589 0.63 -2.4 631,104 - PFR28_00589 0.66 -2.4 631,206 - PFR28_00589 0.85 -1.1 631,487 + PFR28_00590 0.19 +0.1 631,526 + PFR28_00590 0.29 -0.6 631,626 - PFR28_00590 0.52 -0.8 631,766 + PFR28_00590 0.85 -0.8 631,767 - PFR28_00590 0.86 -0.6 631,812 - +0.5 631,860 + +0.5 631,861 - +0.4 631,862 + -0.9 631,862 + +1.2 631,863 - +0.2 631,863 - -1.5 631,863 - +3.1 631,884 + -2.6 631,884 + -2.2 631,885 - -3.0 631,885 - +0.3 631,890 + +0.7 631,890 + +0.6 631,890 + +0.5 631,890 + -1.7 631,890 + +0.1 631,890 + +2.6 631,890 + -0.2 631,890 + +2.0 631,890 + -0.1 631,890 + -1.8 631,890 + -0.1 631,890 + -2.3 631,890 + -0.1 631,890 + -0.2 631,890 + -1.9 631,890 + -0.7 631,890 + +2.1 631,890 + -0.3 631,890 + -0.6 631,890 + -0.6 631,890 + -0.4 631,890 + +0.8 631,890 + -0.6 631,890 + -0.4 631,890 + -1.8 631,890 + -0.7 631,890 + +0.4 631,890 + -0.0 631,890 + +0.1 631,890 + -0.3 631,891 - +0.9 631,891 - -1.5 631,891 - -0.1 631,891 - -0.0 631,891 - +0.2 631,891 - +0.5 631,891 - +0.5 631,891 - -0.2 631,891 - -1.0 631,891 - +1.0 631,891 - -0.6 631,891 - -0.2 631,891 - +1.0 631,891 - +1.6 631,891 - +0.5 631,891 - -1.0 631,891 - -0.5 631,891 - -0.4 631,891 - +0.5 631,891 - -0.1 631,892 + +0.1 631,892 + +0.3 631,892 + +0.9 631,892 + -1.0 631,892 + +0.4 631,892 + +2.1 631,892 + -0.5 631,893 - +1.1 631,893 - -0.8 631,893 - +0.2 631,893 - +1.4 631,893 - -0.6 631,893 - +1.2 631,893 - +0.2 631,893 - +1.2 631,922 + -0.6 631,922 + -2.2 631,922 + +0.1 631,922 + -0.5 631,922 + -0.2 631,922 + -1.2 631,922 + +0.8 631,922 + -0.3 631,922 + -2.2 631,923 - +0.6 631,923 - -1.5 631,923 - -1.1 631,923 - -1.0 631,923 - +0.8 631,923 - +1.3 631,926 + -0.5 631,926 + -0.1 631,926 + -0.7 631,926 + -0.8 631,926 + +0.5 631,926 + +0.4 631,926 + -1.1 631,926 + -0.1 631,926 + -0.3 631,926 + -0.1 631,926 + -0.1 631,926 + +0.0 631,926 + -0.1 631,926 + -0.1 631,926 + +0.0 631,926 + -0.6 631,927 - +0.9 631,927 - +0.1 631,927 - +1.3 631,927 - +1.2 631,927 - -2.2 631,927 - -0.2 631,927 - -0.5 631,927 - -2.5 631,927 - +0.8 631,927 - -0.1 631,927 - -0.3 631,927 - -0.1 632,137 - +1.1 632,137 - +0.3 632,304 + PFR28_00592 0.34 -0.7 632,304 + PFR28_00592 0.34 -1.1 632,304 + PFR28_00592 0.34 -1.1 632,304 + PFR28_00592 0.34 -0.4 632,304 + PFR28_00592 0.34 -1.8 632,305 - PFR28_00592 0.34 +0.2 632,305 - PFR28_00592 0.34 -0.2 632,305 - PFR28_00592 0.34 -0.4 632,305 - PFR28_00592 0.34 -0.8 632,305 - PFR28_00592 0.34 -0.1 632,305 - PFR28_00592 0.34 +0.6 632,342 + PFR28_00592 0.41 -0.7 632,342 + PFR28_00592 0.41 +0.4 632,342 + PFR28_00592 0.41 +0.4 632,342 + PFR28_00592 0.41 -0.7 632,342 + PFR28_00592 0.41 -1.3 632,342 + PFR28_00592 0.41 +0.4 632,342 + PFR28_00592 0.41 -0.4 632,342 + PFR28_00592 0.41 -0.1 632,342 + PFR28_00592 0.41 +0.8 632,342 + PFR28_00592 0.41 +0.3 632,342 + PFR28_00592 0.41 +0.5 632,343 - PFR28_00592 0.41 -2.1 632,343 - PFR28_00592 0.41 -0.6 632,343 - PFR28_00592 0.41 +0.2 632,343 - PFR28_00592 0.41 -2.2 632,343 - PFR28_00592 0.41 -0.8 632,343 - PFR28_00592 0.41 -0.7 632,343 - PFR28_00592 0.41 -0.9 632,419 + PFR28_00592 0.55 -0.4 632,420 - PFR28_00592 0.55 +0.9 632,420 - PFR28_00592 0.55 -1.0 632,420 - PFR28_00592 0.55 -0.4 632,420 - PFR28_00592 0.55 -1.5 632,500 - PFR28_00592 0.70 +1.1 632,637 + -0.1 632,637 + +0.5 632,637 + -0.7 632,638 - +1.1 632,680 + +0.0 632,680 + +0.3 632,680 + +1.6 632,680 + +1.1 632,680 + +0.3 632,680 + -0.5 632,681 - +1.0 632,681 - -0.1 632,681 - +0.5 632,681 - -1.3 632,681 - +0.2 632,681 - +0.5 632,684 + -2.3 632,684 + +0.3 632,684 + -2.2 632,684 + -0.3 632,684 + -1.9 632,685 - -0.7 632,756 + +0.4 632,756 + -0.6 632,756 + -1.0 632,757 - -0.3 632,757 - -1.6 632,757 - +0.5
Or see this region's nucleotide sequence