Experiment: Glycerol (C) 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00899 and PFR28_00900 are separated by 185 nucleotides PFR28_00900 and PFR28_00901 are separated by 4 nucleotides PFR28_00901 and PFR28_00902 are separated by 63 nucleotides
PFR28_00899: PFR28_00899 - putative oxidoreductase YciK, at 977,228 to 977,968
_00899
PFR28_00900: PFR28_00900 - N-acetylmuramic acid 6-phosphate phosphatase, at 978,154 to 978,825
_00900
PFR28_00901: PFR28_00901 - Ubiquinone biosynthesis O-methyltransferase, at 978,830 to 979,528
_00901
PFR28_00902: PFR28_00902 - 5-methylthioadenosine/S-adenosylhomocysteine deaminase, at 979,592 to 980,923
_00902
Position (kb) 978
979 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 977.229 kb on + strand at 977.959 kb on - strand at 977.969 kb on - strand at 977.969 kb on - strand at 977.969 kb on - strand at 977.969 kb on - strand at 978.190 kb on + strand at 978.190 kb on + strand at 978.190 kb on + strand at 978.191 kb on - strand at 978.191 kb on - strand at 978.191 kb on - strand at 978.257 kb on + strand, within PFR28_00900 at 978.257 kb on + strand, within PFR28_00900 at 978.258 kb on - strand, within PFR28_00900 at 978.258 kb on - strand, within PFR28_00900 at 978.258 kb on - strand, within PFR28_00900 at 978.263 kb on + strand, within PFR28_00900 at 978.263 kb on + strand, within PFR28_00900 at 978.263 kb on + strand, within PFR28_00900 at 978.263 kb on + strand, within PFR28_00900 at 978.263 kb on + strand, within PFR28_00900 at 978.263 kb on + strand, within PFR28_00900 at 978.263 kb on + strand, within PFR28_00900 at 978.264 kb on - strand, within PFR28_00900 at 978.264 kb on - strand, within PFR28_00900 at 978.593 kb on + strand, within PFR28_00900 at 978.669 kb on + strand, within PFR28_00900 at 978.669 kb on + strand, within PFR28_00900 at 978.831 kb on + strand at 978.831 kb on + strand at 978.831 kb on + strand at 978.832 kb on - strand at 978.832 kb on - strand at 978.832 kb on - strand at 978.832 kb on - strand at 978.832 kb on - strand at 978.832 kb on - strand at 979.685 kb on + strand at 979.737 kb on + strand, within PFR28_00902 at 979.737 kb on + strand, within PFR28_00902 at 979.737 kb on + strand, within PFR28_00902 at 979.737 kb on + strand, within PFR28_00902 at 979.737 kb on + strand, within PFR28_00902 at 979.737 kb on + strand, within PFR28_00902 at 979.737 kb on + strand, within PFR28_00902 at 979.737 kb on + strand, within PFR28_00902 at 979.737 kb on + strand, within PFR28_00902 at 979.737 kb on + strand, within PFR28_00902 at 979.737 kb on + strand, within PFR28_00902 at 979.738 kb on - strand, within PFR28_00902 at 979.738 kb on - strand, within PFR28_00902 at 979.761 kb on + strand, within PFR28_00902 at 979.761 kb on + strand, within PFR28_00902
Per-strain Table
Position Strand Gene LocusTag Fraction Glycerol (C) 20 mM remove 977,229 + +0.1 977,959 - +1.4 977,969 - -1.2 977,969 - -0.1 977,969 - +0.3 977,969 - +0.2 978,190 + -0.5 978,190 + -2.7 978,190 + +0.3 978,191 - +0.3 978,191 - +0.0 978,191 - -0.2 978,257 + PFR28_00900 0.15 -3.4 978,257 + PFR28_00900 0.15 -2.9 978,258 - PFR28_00900 0.15 -1.8 978,258 - PFR28_00900 0.15 -2.4 978,258 - PFR28_00900 0.15 -4.7 978,263 + PFR28_00900 0.16 -1.0 978,263 + PFR28_00900 0.16 -3.8 978,263 + PFR28_00900 0.16 -3.4 978,263 + PFR28_00900 0.16 -2.4 978,263 + PFR28_00900 0.16 -2.0 978,263 + PFR28_00900 0.16 -2.7 978,263 + PFR28_00900 0.16 -2.4 978,264 - PFR28_00900 0.16 -2.6 978,264 - PFR28_00900 0.16 -1.8 978,593 + PFR28_00900 0.65 -2.1 978,669 + PFR28_00900 0.77 -2.5 978,669 + PFR28_00900 0.77 -2.2 978,831 + -1.2 978,831 + -1.5 978,831 + +0.8 978,832 - -3.8 978,832 - -3.7 978,832 - -4.5 978,832 - -1.2 978,832 - -2.6 978,832 - -1.7 979,685 + -0.7 979,737 + PFR28_00902 0.11 -1.4 979,737 + PFR28_00902 0.11 -0.8 979,737 + PFR28_00902 0.11 +0.5 979,737 + PFR28_00902 0.11 +0.3 979,737 + PFR28_00902 0.11 +0.0 979,737 + PFR28_00902 0.11 -0.4 979,737 + PFR28_00902 0.11 -0.7 979,737 + PFR28_00902 0.11 -0.7 979,737 + PFR28_00902 0.11 -0.7 979,737 + PFR28_00902 0.11 -2.4 979,737 + PFR28_00902 0.11 -0.5 979,738 - PFR28_00902 0.11 +0.6 979,738 - PFR28_00902 0.11 +1.1 979,761 + PFR28_00902 0.13 +0.6 979,761 + PFR28_00902 0.13 +0.5
Or see this region's nucleotide sequence