Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_06650

Experiment: R2A_PIPES; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthflK and hflC overlap by 4 nucleotideshflC and OKGIIK_06650 are separated by 10 nucleotidesOKGIIK_06650 and purA are separated by 62 nucleotides OKGIIK_06640: hflK - FtsH protease activity modulator HflK, at 1,476,880 to 1,477,950 hflK OKGIIK_06645: hflC - protease modulator HflC, at 1,477,947 to 1,478,816 hflC OKGIIK_06650: OKGIIK_06650 - DUF2065 domain-containing protein, at 1,478,827 to 1,479,009 _06650 OKGIIK_06655: purA - adenylosuccinate synthase, at 1,479,072 to 1,480,364 purA Position (kb) 1478 1479 1480Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1477.923 kb on + strandat 1477.923 kb on + strandat 1477.923 kb on + strandat 1478.073 kb on + strand, within hflCat 1478.073 kb on + strand, within hflCat 1478.073 kb on + strand, within hflCat 1478.166 kb on + strand, within hflCat 1478.166 kb on + strand, within hflCat 1478.166 kb on + strand, within hflCat 1478.166 kb on + strand, within hflCat 1478.166 kb on + strand, within hflCat 1478.166 kb on + strand, within hflCat 1478.166 kb on + strand, within hflCat 1478.205 kb on + strand, within hflCat 1478.205 kb on + strand, within hflCat 1478.205 kb on + strand, within hflCat 1478.205 kb on + strand, within hflCat 1478.205 kb on + strand, within hflCat 1478.205 kb on + strand, within hflCat 1478.205 kb on + strand, within hflCat 1478.238 kb on + strand, within hflCat 1478.238 kb on + strand, within hflCat 1478.238 kb on + strand, within hflCat 1478.241 kb on + strand, within hflCat 1478.241 kb on + strand, within hflCat 1478.484 kb on + strand, within hflCat 1478.484 kb on + strand, within hflCat 1478.484 kb on + strand, within hflCat 1478.484 kb on + strand, within hflCat 1478.484 kb on + strand, within hflCat 1478.484 kb on + strand, within hflCat 1478.484 kb on + strand, within hflCat 1478.590 kb on + strand, within hflCat 1478.590 kb on + strand, within hflCat 1478.590 kb on + strand, within hflCat 1478.590 kb on + strand, within hflCat 1478.590 kb on + strand, within hflCat 1478.590 kb on + strand, within hflCat 1478.590 kb on + strand, within hflCat 1478.590 kb on + strand, within hflCat 1478.590 kb on + strand, within hflCat 1478.590 kb on + strand, within hflCat 1478.590 kb on + strand, within hflCat 1478.590 kb on + strand, within hflCat 1478.590 kb on + strand, within hflCat 1478.661 kb on + strand, within hflCat 1478.661 kb on + strand, within hflCat 1478.661 kb on + strand, within hflCat 1478.661 kb on + strand, within hflCat 1478.661 kb on + strand, within hflCat 1478.661 kb on + strand, within hflCat 1478.673 kb on + strand, within hflCat 1478.673 kb on + strand, within hflCat 1478.703 kb on + strand, within hflCat 1478.703 kb on + strand, within hflCat 1478.703 kb on + strand, within hflCat 1478.703 kb on + strand, within hflCat 1478.703 kb on + strand, within hflCat 1478.703 kb on + strand, within hflCat 1478.721 kb on + strand, within hflCat 1478.787 kb on + strandat 1478.787 kb on + strandat 1478.943 kb on + strand, within OKGIIK_06650at 1478.943 kb on + strand, within OKGIIK_06650at 1478.943 kb on + strand, within OKGIIK_06650at 1478.944 kb on - strand, within OKGIIK_06650at 1478.944 kb on - strand, within OKGIIK_06650at 1478.944 kb on - strand, within OKGIIK_06650at 1479.010 kb on + strandat 1479.010 kb on + strandat 1479.010 kb on + strandat 1479.010 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES; no stress control
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1,477,923 + -0.8
1,477,923 + +2.2
1,477,923 + -0.9
1,478,073 + hflC OKGIIK_06645 0.14 -0.8
1,478,073 + hflC OKGIIK_06645 0.14 -2.2
1,478,073 + hflC OKGIIK_06645 0.14 -2.1
1,478,166 + hflC OKGIIK_06645 0.25 -1.1
1,478,166 + hflC OKGIIK_06645 0.25 -1.4
1,478,166 + hflC OKGIIK_06645 0.25 -2.1
1,478,166 + hflC OKGIIK_06645 0.25 -1.1
1,478,166 + hflC OKGIIK_06645 0.25 +0.2
1,478,166 + hflC OKGIIK_06645 0.25 -2.5
1,478,166 + hflC OKGIIK_06645 0.25 -1.4
1,478,205 + hflC OKGIIK_06645 0.30 -0.1
1,478,205 + hflC OKGIIK_06645 0.30 -1.4
1,478,205 + hflC OKGIIK_06645 0.30 -0.8
1,478,205 + hflC OKGIIK_06645 0.30 -2.4
1,478,205 + hflC OKGIIK_06645 0.30 +0.2
1,478,205 + hflC OKGIIK_06645 0.30 -1.1
1,478,205 + hflC OKGIIK_06645 0.30 +0.1
1,478,238 + hflC OKGIIK_06645 0.33 -1.1
1,478,238 + hflC OKGIIK_06645 0.33 +0.2
1,478,238 + hflC OKGIIK_06645 0.33 -2.4
1,478,241 + hflC OKGIIK_06645 0.34 -1.1
1,478,241 + hflC OKGIIK_06645 0.34 -2.1
1,478,484 + hflC OKGIIK_06645 0.62 -0.1
1,478,484 + hflC OKGIIK_06645 0.62 -0.5
1,478,484 + hflC OKGIIK_06645 0.62 -1.2
1,478,484 + hflC OKGIIK_06645 0.62 -0.5
1,478,484 + hflC OKGIIK_06645 0.62 -2.6
1,478,484 + hflC OKGIIK_06645 0.62 -2.8
1,478,484 + hflC OKGIIK_06645 0.62 -1.1
1,478,590 + hflC OKGIIK_06645 0.74 -1.6
1,478,590 + hflC OKGIIK_06645 0.74 -2.3
1,478,590 + hflC OKGIIK_06645 0.74 -2.1
1,478,590 + hflC OKGIIK_06645 0.74 -0.8
1,478,590 + hflC OKGIIK_06645 0.74 -2.0
1,478,590 + hflC OKGIIK_06645 0.74 -2.6
1,478,590 + hflC OKGIIK_06645 0.74 -1.8
1,478,590 + hflC OKGIIK_06645 0.74 +0.2
1,478,590 + hflC OKGIIK_06645 0.74 +1.2
1,478,590 + hflC OKGIIK_06645 0.74 +1.8
1,478,590 + hflC OKGIIK_06645 0.74 -0.8
1,478,590 + hflC OKGIIK_06645 0.74 -1.0
1,478,590 + hflC OKGIIK_06645 0.74 -0.0
1,478,661 + hflC OKGIIK_06645 0.82 +0.6
1,478,661 + hflC OKGIIK_06645 0.82 +2.2
1,478,661 + hflC OKGIIK_06645 0.82 -3.1
1,478,661 + hflC OKGIIK_06645 0.82 +0.2
1,478,661 + hflC OKGIIK_06645 0.82 -0.4
1,478,661 + hflC OKGIIK_06645 0.82 -1.1
1,478,673 + hflC OKGIIK_06645 0.83 -1.0
1,478,673 + hflC OKGIIK_06645 0.83 -1.1
1,478,703 + hflC OKGIIK_06645 0.87 -1.6
1,478,703 + hflC OKGIIK_06645 0.87 +0.5
1,478,703 + hflC OKGIIK_06645 0.87 -0.8
1,478,703 + hflC OKGIIK_06645 0.87 -0.4
1,478,703 + hflC OKGIIK_06645 0.87 -2.4
1,478,703 + hflC OKGIIK_06645 0.87 -0.8
1,478,721 + hflC OKGIIK_06645 0.89 -0.4
1,478,787 + -0.7
1,478,787 + -1.8
1,478,943 + OKGIIK_06650 0.63 -1.1
1,478,943 + OKGIIK_06650 0.63 -1.4
1,478,943 + OKGIIK_06650 0.63 -0.6
1,478,944 - OKGIIK_06650 0.64 -3.0
1,478,944 - OKGIIK_06650 0.64 -0.2
1,478,944 - OKGIIK_06650 0.64 -0.8
1,479,010 + -0.1
1,479,010 + -0.8
1,479,010 + -1.1
1,479,010 + -1.4

Or see this region's nucleotide sequence