Experiment: R2A_PIPES; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nuoN and fMet_trna are separated by 84 nucleotides fMet_trna and rimP are separated by 197 nucleotides rimP and nusA are separated by 173 nucleotides
OKGIIK_05830: nuoN - NADH-quinone oxidoreductase subunit NuoN, at 1,276,913 to 1,278,367
nuoN
OKGIIK_05835: fMet_trna - tRNA-fMet, at 1,278,452 to 1,278,528
_trna
OKGIIK_05840: rimP - ribosome maturation protein RimP, at 1,278,726 to 1,279,268
rimP
OKGIIK_05845: nusA - transcription termination/antitermination protein NusA, at 1,279,442 to 1,280,947
nusA
Position (kb)
1278
1279
1280 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1278.656 kb on + strand at 1278.656 kb on + strand at 1278.721 kb on + strand at 1278.721 kb on + strand at 1278.731 kb on + strand at 1278.731 kb on + strand at 1278.731 kb on + strand at 1278.824 kb on + strand, within rimP at 1278.963 kb on + strand, within rimP at 1278.963 kb on + strand, within rimP at 1278.963 kb on + strand, within rimP at 1278.963 kb on + strand, within rimP at 1278.963 kb on + strand, within rimP at 1278.963 kb on + strand, within rimP at 1279.298 kb on + strand at 1279.298 kb on + strand at 1279.298 kb on + strand at 1279.298 kb on + strand at 1279.298 kb on + strand at 1279.298 kb on + strand at 1279.298 kb on + strand at 1279.298 kb on + strand at 1279.402 kb on + strand at 1279.402 kb on + strand at 1279.402 kb on + strand at 1279.427 kb on + strand at 1279.427 kb on + strand at 1279.427 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES; no stress control remove 1,278,656 + -1.8 1,278,656 + +0.0 1,278,721 + -1.6 1,278,721 + -2.5 1,278,731 + -2.0 1,278,731 + -2.0 1,278,731 + -2.1 1,278,824 + rimP OKGIIK_05840 0.18 -2.0 1,278,963 + rimP OKGIIK_05840 0.44 -1.6 1,278,963 + rimP OKGIIK_05840 0.44 -2.1 1,278,963 + rimP OKGIIK_05840 0.44 -2.3 1,278,963 + rimP OKGIIK_05840 0.44 -0.8 1,278,963 + rimP OKGIIK_05840 0.44 -2.3 1,278,963 + rimP OKGIIK_05840 0.44 -0.8 1,279,298 + -1.0 1,279,298 + -0.1 1,279,298 + +0.4 1,279,298 + +1.4 1,279,298 + +0.2 1,279,298 + -1.6 1,279,298 + -1.6 1,279,298 + -0.5 1,279,402 + +0.2 1,279,402 + +0.2 1,279,402 + -0.5 1,279,427 + +2.2 1,279,427 + -0.2 1,279,427 + -1.1
Or see this region's nucleotide sequence