Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_03430

Experiment: R2A_PIPES; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_03420 and OKGIIK_03425 are separated by 84 nucleotidesOKGIIK_03425 and OKGIIK_03430 are separated by 28 nucleotidesOKGIIK_03430 and OKGIIK_03435 are separated by 89 nucleotidesOKGIIK_03435 and rlmKL overlap by 4 nucleotides OKGIIK_03420: OKGIIK_03420 - hypothetical protein, at 763,320 to 763,457 _03420 OKGIIK_03425: OKGIIK_03425 - AraC family transcriptional regulator, at 763,542 to 764,378 _03425 OKGIIK_03430: OKGIIK_03430 - N-acetylmuramoyl-L-alanine amidase, at 764,407 to 764,961 _03430 OKGIIK_03435: OKGIIK_03435 - Alpha/beta hydrolase, at 765,051 to 765,578 _03435 OKGIIK_03440: rlmKL - bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL, at 765,575 to 767,776 rlmKL Position (kb) 764 765Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 763.426 kb on + strand, within OKGIIK_03420at 763.535 kb on + strandat 763.536 kb on - strandat 763.536 kb on - strandat 763.536 kb on - strandat 763.594 kb on + strandat 763.594 kb on + strandat 763.594 kb on + strandat 763.594 kb on + strandat 763.595 kb on - strandat 763.595 kb on - strandat 763.720 kb on + strand, within OKGIIK_03425at 763.726 kb on + strand, within OKGIIK_03425at 763.726 kb on + strand, within OKGIIK_03425at 763.726 kb on + strand, within OKGIIK_03425at 763.726 kb on + strand, within OKGIIK_03425at 763.727 kb on - strand, within OKGIIK_03425at 763.727 kb on - strand, within OKGIIK_03425at 763.727 kb on - strand, within OKGIIK_03425at 763.727 kb on - strand, within OKGIIK_03425at 763.768 kb on + strand, within OKGIIK_03425at 763.768 kb on + strand, within OKGIIK_03425at 763.768 kb on + strand, within OKGIIK_03425at 763.768 kb on + strand, within OKGIIK_03425at 763.768 kb on + strand, within OKGIIK_03425at 763.768 kb on + strand, within OKGIIK_03425at 763.768 kb on + strand, within OKGIIK_03425at 763.769 kb on - strand, within OKGIIK_03425at 763.769 kb on - strand, within OKGIIK_03425at 763.769 kb on - strand, within OKGIIK_03425at 763.769 kb on - strand, within OKGIIK_03425at 763.769 kb on - strand, within OKGIIK_03425at 763.769 kb on - strand, within OKGIIK_03425at 764.161 kb on + strand, within OKGIIK_03425at 764.162 kb on - strand, within OKGIIK_03425at 764.236 kb on + strand, within OKGIIK_03425at 764.236 kb on + strand, within OKGIIK_03425at 764.237 kb on - strand, within OKGIIK_03425at 764.237 kb on - strand, within OKGIIK_03425at 764.237 kb on - strand, within OKGIIK_03425at 764.237 kb on - strand, within OKGIIK_03425at 764.237 kb on - strand, within OKGIIK_03425at 764.237 kb on - strand, within OKGIIK_03425at 764.237 kb on - strand, within OKGIIK_03425at 764.237 kb on - strand, within OKGIIK_03425at 764.237 kb on - strand, within OKGIIK_03425at 764.408 kb on + strandat 764.408 kb on + strandat 764.408 kb on + strandat 764.408 kb on + strandat 764.408 kb on + strandat 764.408 kb on + strandat 764.409 kb on - strandat 764.670 kb on - strand, within OKGIIK_03430at 764.753 kb on + strand, within OKGIIK_03430at 764.754 kb on - strand, within OKGIIK_03430at 764.783 kb on + strand, within OKGIIK_03430at 764.783 kb on + strand, within OKGIIK_03430at 764.783 kb on + strand, within OKGIIK_03430at 764.783 kb on + strand, within OKGIIK_03430at 764.783 kb on + strand, within OKGIIK_03430at 764.783 kb on + strand, within OKGIIK_03430at 764.783 kb on + strand, within OKGIIK_03430at 764.783 kb on + strand, within OKGIIK_03430at 764.783 kb on + strand, within OKGIIK_03430at 764.783 kb on + strand, within OKGIIK_03430at 764.783 kb on + strand, within OKGIIK_03430at 764.783 kb on + strand, within OKGIIK_03430at 764.784 kb on - strand, within OKGIIK_03430at 764.784 kb on - strand, within OKGIIK_03430at 764.784 kb on - strand, within OKGIIK_03430at 764.784 kb on - strand, within OKGIIK_03430at 764.784 kb on - strand, within OKGIIK_03430at 764.784 kb on - strand, within OKGIIK_03430at 764.784 kb on - strand, within OKGIIK_03430at 764.784 kb on - strand, within OKGIIK_03430at 764.784 kb on - strand, within OKGIIK_03430at 764.784 kb on - strand, within OKGIIK_03430at 764.784 kb on - strand, within OKGIIK_03430at 764.784 kb on - strand, within OKGIIK_03430at 764.786 kb on + strand, within OKGIIK_03430at 764.786 kb on + strand, within OKGIIK_03430at 764.786 kb on + strand, within OKGIIK_03430at 764.786 kb on + strand, within OKGIIK_03430at 764.786 kb on + strand, within OKGIIK_03430at 764.786 kb on + strand, within OKGIIK_03430at 764.786 kb on + strand, within OKGIIK_03430at 764.786 kb on + strand, within OKGIIK_03430at 764.786 kb on + strand, within OKGIIK_03430at 764.787 kb on - strand, within OKGIIK_03430at 764.834 kb on + strand, within OKGIIK_03430at 764.928 kb on - strandat 764.928 kb on - strandat 764.928 kb on - strandat 764.928 kb on - strandat 765.008 kb on + strandat 765.008 kb on + strandat 765.008 kb on + strandat 765.008 kb on + strandat 765.009 kb on - strandat 765.009 kb on - strandat 765.009 kb on - strandat 765.009 kb on - strandat 765.009 kb on - strandat 765.009 kb on - strandat 765.009 kb on - strandat 765.165 kb on + strand, within OKGIIK_03435at 765.165 kb on + strand, within OKGIIK_03435at 765.166 kb on - strand, within OKGIIK_03435at 765.166 kb on - strand, within OKGIIK_03435at 765.363 kb on + strand, within OKGIIK_03435at 765.524 kb on + strand, within OKGIIK_03435at 765.524 kb on + strand, within OKGIIK_03435at 765.524 kb on + strand, within OKGIIK_03435at 765.524 kb on + strand, within OKGIIK_03435at 765.524 kb on + strand, within OKGIIK_03435at 765.524 kb on + strand, within OKGIIK_03435at 765.524 kb on + strand, within OKGIIK_03435at 765.524 kb on + strand, within OKGIIK_03435at 765.524 kb on + strand, within OKGIIK_03435at 765.525 kb on - strand, within OKGIIK_03435at 765.525 kb on - strand, within OKGIIK_03435at 765.525 kb on - strand, within OKGIIK_03435at 765.525 kb on - strand, within OKGIIK_03435at 765.525 kb on - strand, within OKGIIK_03435at 765.525 kb on - strand, within OKGIIK_03435at 765.629 kb on + strandat 765.629 kb on + strandat 765.629 kb on + strandat 765.629 kb on + strandat 765.629 kb on + strandat 765.629 kb on + strandat 765.629 kb on + strandat 765.629 kb on + strandat 765.629 kb on + strandat 765.629 kb on + strandat 765.630 kb on - strandat 765.630 kb on - strandat 765.630 kb on - strandat 765.630 kb on - strandat 765.630 kb on - strandat 765.630 kb on - strandat 765.630 kb on - strandat 765.630 kb on - strandat 765.630 kb on - strandat 765.630 kb on - strandat 765.630 kb on - strandat 765.630 kb on - strandat 765.722 kb on + strandat 765.722 kb on + strandat 765.722 kb on + strandat 765.723 kb on - strandat 765.723 kb on - strandat 765.723 kb on - strandat 765.723 kb on - strandat 765.723 kb on - strandat 765.723 kb on - strandat 765.723 kb on - strandat 765.806 kb on + strand, within rlmKLat 765.807 kb on - strand, within rlmKLat 765.807 kb on - strand, within rlmKL

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES; no stress control
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763,426 + OKGIIK_03420 0.77 -0.6
763,535 + -1.2
763,536 - -0.9
763,536 - -0.2
763,536 - +1.1
763,594 + -0.0
763,594 + +0.3
763,594 + -0.4
763,594 + +1.3
763,595 - +0.3
763,595 - +1.1
763,720 + OKGIIK_03425 0.21 +0.3
763,726 + OKGIIK_03425 0.22 -1.4
763,726 + OKGIIK_03425 0.22 +0.8
763,726 + OKGIIK_03425 0.22 +0.1
763,726 + OKGIIK_03425 0.22 +0.5
763,727 - OKGIIK_03425 0.22 -1.0
763,727 - OKGIIK_03425 0.22 -0.5
763,727 - OKGIIK_03425 0.22 +1.1
763,727 - OKGIIK_03425 0.22 -1.5
763,768 + OKGIIK_03425 0.27 +0.1
763,768 + OKGIIK_03425 0.27 -0.4
763,768 + OKGIIK_03425 0.27 +1.1
763,768 + OKGIIK_03425 0.27 -1.5
763,768 + OKGIIK_03425 0.27 +0.6
763,768 + OKGIIK_03425 0.27 -0.1
763,768 + OKGIIK_03425 0.27 +0.9
763,769 - OKGIIK_03425 0.27 +1.1
763,769 - OKGIIK_03425 0.27 +0.1
763,769 - OKGIIK_03425 0.27 -1.2
763,769 - OKGIIK_03425 0.27 -0.3
763,769 - OKGIIK_03425 0.27 -1.5
763,769 - OKGIIK_03425 0.27 +0.5
764,161 + OKGIIK_03425 0.74 -0.2
764,162 - OKGIIK_03425 0.74 -1.5
764,236 + OKGIIK_03425 0.83 -0.7
764,236 + OKGIIK_03425 0.83 -0.9
764,237 - OKGIIK_03425 0.83 +0.2
764,237 - OKGIIK_03425 0.83 -2.2
764,237 - OKGIIK_03425 0.83 -1.2
764,237 - OKGIIK_03425 0.83 +2.8
764,237 - OKGIIK_03425 0.83 +0.3
764,237 - OKGIIK_03425 0.83 +0.8
764,237 - OKGIIK_03425 0.83 +2.1
764,237 - OKGIIK_03425 0.83 -1.2
764,237 - OKGIIK_03425 0.83 -0.3
764,408 + -0.7
764,408 + +1.3
764,408 + +0.1
764,408 + -0.3
764,408 + -0.9
764,408 + -0.9
764,409 - +3.4
764,670 - OKGIIK_03430 0.47 -1.5
764,753 + OKGIIK_03430 0.62 -0.5
764,754 - OKGIIK_03430 0.63 -1.4
764,783 + OKGIIK_03430 0.68 -1.7
764,783 + OKGIIK_03430 0.68 +0.1
764,783 + OKGIIK_03430 0.68 -2.2
764,783 + OKGIIK_03430 0.68 +1.1
764,783 + OKGIIK_03430 0.68 -2.5
764,783 + OKGIIK_03430 0.68 +0.1
764,783 + OKGIIK_03430 0.68 -0.9
764,783 + OKGIIK_03430 0.68 -2.1
764,783 + OKGIIK_03430 0.68 -2.4
764,783 + OKGIIK_03430 0.68 -1.7
764,783 + OKGIIK_03430 0.68 -1.2
764,783 + OKGIIK_03430 0.68 -0.3
764,784 - OKGIIK_03430 0.68 -1.1
764,784 - OKGIIK_03430 0.68 -0.5
764,784 - OKGIIK_03430 0.68 +1.1
764,784 - OKGIIK_03430 0.68 -0.9
764,784 - OKGIIK_03430 0.68 +1.1
764,784 - OKGIIK_03430 0.68 +0.7
764,784 - OKGIIK_03430 0.68 -1.5
764,784 - OKGIIK_03430 0.68 -2.0
764,784 - OKGIIK_03430 0.68 -2.7
764,784 - OKGIIK_03430 0.68 -1.5
764,784 - OKGIIK_03430 0.68 -3.2
764,784 - OKGIIK_03430 0.68 -0.7
764,786 + OKGIIK_03430 0.68 -1.7
764,786 + OKGIIK_03430 0.68 -2.5
764,786 + OKGIIK_03430 0.68 -2.2
764,786 + OKGIIK_03430 0.68 -1.7
764,786 + OKGIIK_03430 0.68 -3.3
764,786 + OKGIIK_03430 0.68 -3.2
764,786 + OKGIIK_03430 0.68 -2.1
764,786 + OKGIIK_03430 0.68 -3.3
764,786 + OKGIIK_03430 0.68 +1.1
764,787 - OKGIIK_03430 0.68 -1.5
764,834 + OKGIIK_03430 0.77 -1.5
764,928 - -3.7
764,928 - -3.2
764,928 - -2.6
764,928 - +1.1
765,008 + -0.9
765,008 + -3.2
765,008 + +2.3
765,008 + -0.5
765,009 - -0.9
765,009 - -1.7
765,009 - -0.9
765,009 - -1.2
765,009 - -1.1
765,009 - +0.5
765,009 - -1.5
765,165 + OKGIIK_03435 0.22 -1.5
765,165 + OKGIIK_03435 0.22 -0.9
765,166 - OKGIIK_03435 0.22 -2.1
765,166 - OKGIIK_03435 0.22 +1.1
765,363 + OKGIIK_03435 0.59 -0.4
765,524 + OKGIIK_03435 0.90 -0.3
765,524 + OKGIIK_03435 0.90 -2.1
765,524 + OKGIIK_03435 0.90 -2.2
765,524 + OKGIIK_03435 0.90 +2.0
765,524 + OKGIIK_03435 0.90 -1.5
765,524 + OKGIIK_03435 0.90 -0.9
765,524 + OKGIIK_03435 0.90 -0.4
765,524 + OKGIIK_03435 0.90 -1.8
765,524 + OKGIIK_03435 0.90 -0.5
765,525 - OKGIIK_03435 0.90 -0.4
765,525 - OKGIIK_03435 0.90 -1.4
765,525 - OKGIIK_03435 0.90 +0.6
765,525 - OKGIIK_03435 0.90 -0.5
765,525 - OKGIIK_03435 0.90 -0.9
765,525 - OKGIIK_03435 0.90 +0.2
765,629 + -2.8
765,629 + -0.4
765,629 + -0.2
765,629 + -0.8
765,629 + -2.2
765,629 + -1.4
765,629 + -2.2
765,629 + -0.7
765,629 + -1.1
765,629 + -0.3
765,630 - +0.1
765,630 - -0.7
765,630 - +0.2
765,630 - -2.4
765,630 - -1.2
765,630 - -0.5
765,630 - +0.6
765,630 - -0.1
765,630 - -3.1
765,630 - -0.5
765,630 - -0.4
765,630 - +0.5
765,722 + -0.7
765,722 + -1.9
765,722 + +0.9
765,723 - -0.7
765,723 - +0.1
765,723 - +1.1
765,723 - -0.4
765,723 - -1.8
765,723 - +0.3
765,723 - -1.1
765,806 + rlmKL OKGIIK_03440 0.10 -0.1
765,807 - rlmKL OKGIIK_03440 0.11 -0.8
765,807 - rlmKL OKGIIK_03440 0.11 -1.2

Or see this region's nucleotide sequence