Experiment: R2A_PIPES; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_02860 and OKGIIK_02865 overlap by 11 nucleotides OKGIIK_02865 and OKGIIK_02870 are separated by 31 nucleotides OKGIIK_02870 and OKGIIK_02875 overlap by 4 nucleotides OKGIIK_02875 and OKGIIK_02880 are separated by 160 nucleotides OKGIIK_02880 and ompR are separated by 13 nucleotides ompR and OKGIIK_02890 are separated by 17 nucleotides
OKGIIK_02860: OKGIIK_02860 - Chemotaxis protein CheW, at 658,162 to 658,641
_02860
OKGIIK_02865: OKGIIK_02865 - DUF2802 domain-containing protein, at 658,631 to 658,984
_02865
OKGIIK_02870: OKGIIK_02870 - Flagellar biosynthesis protein, at 659,016 to 659,267
_02870
OKGIIK_02875: OKGIIK_02875 - Flg-hook domain-containing protein, at 659,264 to 660,406
_02875
OKGIIK_02880: OKGIIK_02880 - STAS domain-containing protein, at 660,567 to 660,926
_02880
OKGIIK_02885: ompR - response regulator, at 660,940 to 661,302
ompR
OKGIIK_02890: OKGIIK_02890 - Histidine kinase, at 661,320 to 663,293
_02890
Position (kb) 659
660
661 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 658.454 kb on + strand, within OKGIIK_02860 at 658.656 kb on + strand at 658.656 kb on + strand at 658.656 kb on + strand at 658.656 kb on + strand at 658.656 kb on + strand at 658.656 kb on + strand at 658.656 kb on + strand at 658.656 kb on + strand at 658.657 kb on - strand at 658.657 kb on - strand at 658.657 kb on - strand at 658.657 kb on - strand at 658.657 kb on - strand at 658.657 kb on - strand at 658.657 kb on - strand at 658.657 kb on - strand at 658.657 kb on - strand at 658.657 kb on - strand at 658.657 kb on - strand at 658.657 kb on - strand at 659.018 kb on - strand at 659.035 kb on + strand at 659.035 kb on - strand at 659.036 kb on - strand at 659.036 kb on - strand at 659.036 kb on - strand at 659.068 kb on + strand, within OKGIIK_02870 at 659.068 kb on + strand, within OKGIIK_02870 at 659.068 kb on + strand, within OKGIIK_02870 at 659.069 kb on - strand, within OKGIIK_02870 at 659.069 kb on - strand, within OKGIIK_02870 at 659.069 kb on - strand, within OKGIIK_02870 at 659.069 kb on - strand, within OKGIIK_02870 at 659.069 kb on - strand, within OKGIIK_02870 at 659.602 kb on - strand, within OKGIIK_02875 at 659.777 kb on + strand, within OKGIIK_02875 at 660.096 kb on + strand, within OKGIIK_02875 at 660.236 kb on + strand, within OKGIIK_02875 at 660.236 kb on + strand, within OKGIIK_02875 at 660.236 kb on + strand, within OKGIIK_02875 at 660.236 kb on + strand, within OKGIIK_02875 at 660.236 kb on + strand, within OKGIIK_02875 at 660.236 kb on + strand, within OKGIIK_02875 at 660.236 kb on + strand, within OKGIIK_02875 at 660.237 kb on - strand, within OKGIIK_02875 at 660.237 kb on - strand, within OKGIIK_02875 at 660.237 kb on - strand, within OKGIIK_02875 at 660.237 kb on - strand, within OKGIIK_02875 at 660.237 kb on - strand, within OKGIIK_02875 at 660.501 kb on + strand at 660.525 kb on + strand at 660.594 kb on - strand at 660.594 kb on - strand at 661.109 kb on + strand, within ompR at 661.110 kb on - strand, within ompR at 661.110 kb on - strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES; no stress control remove 658,454 + OKGIIK_02860 0.61 -0.4 658,656 + +0.3 658,656 + +1.1 658,656 + -1.9 658,656 + -2.4 658,656 + -0.2 658,656 + -2.2 658,656 + -2.1 658,656 + +0.3 658,657 - -0.8 658,657 - -1.7 658,657 - -1.6 658,657 - -1.7 658,657 - -1.7 658,657 - +0.3 658,657 - -0.8 658,657 - +1.5 658,657 - -1.2 658,657 - +0.1 658,657 - -2.0 658,657 - -1.5 659,018 - -1.5 659,035 + -1.1 659,035 - -0.4 659,036 - -1.9 659,036 - -0.8 659,036 - -1.2 659,068 + OKGIIK_02870 0.21 -1.5 659,068 + OKGIIK_02870 0.21 -1.5 659,068 + OKGIIK_02870 0.21 -0.5 659,069 - OKGIIK_02870 0.21 -0.5 659,069 - OKGIIK_02870 0.21 -0.1 659,069 - OKGIIK_02870 0.21 -0.9 659,069 - OKGIIK_02870 0.21 +3.7 659,069 - OKGIIK_02870 0.21 -2.0 659,602 - OKGIIK_02875 0.30 -2.5 659,777 + OKGIIK_02875 0.45 -0.9 660,096 + OKGIIK_02875 0.73 +0.1 660,236 + OKGIIK_02875 0.85 -1.2 660,236 + OKGIIK_02875 0.85 -0.5 660,236 + OKGIIK_02875 0.85 -1.5 660,236 + OKGIIK_02875 0.85 -2.0 660,236 + OKGIIK_02875 0.85 -0.2 660,236 + OKGIIK_02875 0.85 -3.8 660,236 + OKGIIK_02875 0.85 -0.9 660,237 - OKGIIK_02875 0.85 -1.0 660,237 - OKGIIK_02875 0.85 -0.9 660,237 - OKGIIK_02875 0.85 +0.6 660,237 - OKGIIK_02875 0.85 -1.7 660,237 - OKGIIK_02875 0.85 -2.6 660,501 + -2.1 660,525 + +2.4 660,594 - -0.5 660,594 - +0.6 661,109 + ompR OKGIIK_02885 0.47 +2.7 661,110 - ompR OKGIIK_02885 0.47 -2.0 661,110 - ompR OKGIIK_02885 0.47 -0.7 661,156 + ompR OKGIIK_02885 0.60 -1.5 661,156 + ompR OKGIIK_02885 0.60 -0.1 661,156 + ompR OKGIIK_02885 0.60 -0.5 661,156 + ompR OKGIIK_02885 0.60 -0.1 661,156 + ompR OKGIIK_02885 0.60 +0.1 661,156 + ompR OKGIIK_02885 0.60 +0.6 661,156 + ompR OKGIIK_02885 0.60 +0.1 661,156 + ompR OKGIIK_02885 0.60 +1.5 661,156 + ompR OKGIIK_02885 0.60 -1.5 661,156 + ompR OKGIIK_02885 0.60 -1.2 661,156 + ompR OKGIIK_02885 0.60 -1.8 661,156 + ompR OKGIIK_02885 0.60 -2.5 661,156 + ompR OKGIIK_02885 0.60 +1.1 661,156 + ompR OKGIIK_02885 0.60 -1.5 661,156 + ompR OKGIIK_02885 0.60 -0.7 661,156 + ompR OKGIIK_02885 0.60 +0.1 661,156 + ompR OKGIIK_02885 0.60 +2.1 661,156 + ompR OKGIIK_02885 0.60 +0.3 661,156 + ompR OKGIIK_02885 0.60 +1.6 661,156 + ompR OKGIIK_02885 0.60 -3.0 661,156 + ompR OKGIIK_02885 0.60 -1.4 661,156 + ompR OKGIIK_02885 0.60 -2.8 661,156 + ompR OKGIIK_02885 0.60 -1.1 661,156 + ompR OKGIIK_02885 0.60 -0.7 661,156 + ompR OKGIIK_02885 0.60 -0.7 661,156 + ompR OKGIIK_02885 0.60 -0.1 661,156 + ompR OKGIIK_02885 0.60 +0.7 661,156 + ompR OKGIIK_02885 0.60 -1.2 661,156 + ompR OKGIIK_02885 0.60 -0.5 661,156 + ompR OKGIIK_02885 0.60 -1.2 661,156 + ompR OKGIIK_02885 0.60 -1.5 661,157 - ompR OKGIIK_02885 0.60 +0.7 661,157 - ompR OKGIIK_02885 0.60 -2.2 661,157 - ompR OKGIIK_02885 0.60 -0.4 661,157 - ompR OKGIIK_02885 0.60 -3.0 661,157 - ompR OKGIIK_02885 0.60 -0.5 661,157 - ompR OKGIIK_02885 0.60 -0.8 661,157 - ompR OKGIIK_02885 0.60 +0.8 661,157 - ompR OKGIIK_02885 0.60 -1.2 661,157 - ompR OKGIIK_02885 0.60 +0.3 661,157 - ompR OKGIIK_02885 0.60 +0.5 661,157 - ompR OKGIIK_02885 0.60 -1.6 661,157 - ompR OKGIIK_02885 0.60 +1.1 661,157 - ompR OKGIIK_02885 0.60 -1.6 661,157 - ompR OKGIIK_02885 0.60 +1.8 661,157 - ompR OKGIIK_02885 0.60 -0.8 661,157 - ompR OKGIIK_02885 0.60 -1.0 661,157 - ompR OKGIIK_02885 0.60 -0.8 661,157 - ompR OKGIIK_02885 0.60 -1.1 661,157 - ompR OKGIIK_02885 0.60 -0.3 661,157 - ompR OKGIIK_02885 0.60 -0.7 661,157 - ompR OKGIIK_02885 0.60 -2.1 661,157 - ompR OKGIIK_02885 0.60 -1.7 661,157 - ompR OKGIIK_02885 0.60 -0.1 661,157 - ompR OKGIIK_02885 0.60 -0.3 661,157 - ompR OKGIIK_02885 0.60 +0.1 661,157 - ompR OKGIIK_02885 0.60 +0.2 661,157 - ompR OKGIIK_02885 0.60 -1.6 661,157 - ompR OKGIIK_02885 0.60 +0.1 661,157 - ompR OKGIIK_02885 0.60 +0.1 661,157 - ompR OKGIIK_02885 0.60 +0.1 661,157 - ompR OKGIIK_02885 0.60 -0.8 661,157 - ompR OKGIIK_02885 0.60 -2.2
Or see this region's nucleotide sequence