Experiment: R2A_HOMOPIPES; pH5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_02110 and ttdA are separated by 177 nucleotides ttdA and lysA are separated by 407 nucleotides
OKGIIK_02110: OKGIIK_02110 - Phenazine biosynthesis protein PhzF, at 490,188 to 491,069
_02110
OKGIIK_02115: ttdA - fumarate hydratase, at 491,247 to 492,764
ttdA
OKGIIK_02120: lysA - bifunctional aspartate kinase/diaminopimelate decarboxylase, at 493,172 to 495,733
lysA
Position (kb) 491
492
493 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 490.885 kb on + strand, within OKGIIK_02110 at 491.185 kb on + strand at 491.185 kb on + strand at 491.185 kb on + strand at 491.185 kb on + strand at 491.185 kb on + strand at 491.185 kb on + strand at 491.185 kb on + strand at 491.185 kb on + strand at 491.185 kb on + strand at 491.185 kb on + strand at 491.185 kb on + strand at 491.185 kb on + strand at 491.185 kb on + strand at 491.185 kb on + strand at 491.185 kb on + strand at 491.186 kb on - strand at 491.186 kb on - strand at 491.186 kb on - strand at 491.186 kb on - strand at 491.186 kb on - strand at 491.186 kb on - strand at 491.186 kb on - strand at 491.301 kb on + strand at 491.301 kb on + strand at 491.302 kb on - strand at 491.302 kb on - strand at 491.310 kb on + strand at 491.310 kb on + strand at 491.311 kb on - strand at 491.311 kb on - strand at 491.311 kb on - strand at 491.311 kb on - strand at 491.311 kb on - strand at 491.313 kb on + strand at 491.313 kb on + strand at 491.328 kb on + strand at 491.328 kb on + strand at 491.328 kb on + strand at 491.328 kb on + strand at 491.352 kb on + strand at 491.553 kb on + strand, within ttdA at 491.553 kb on + strand, within ttdA at 491.553 kb on + strand, within ttdA at 491.554 kb on - strand, within ttdA at 491.554 kb on - strand, within ttdA at 491.554 kb on - strand, within ttdA at 491.554 kb on - strand, within ttdA at 491.554 kb on - strand, within ttdA at 491.554 kb on - strand, within ttdA at 491.554 kb on - strand, within ttdA at 491.949 kb on + strand, within ttdA at 491.949 kb on + strand, within ttdA at 492.169 kb on - strand, within ttdA at 492.169 kb on - strand, within ttdA at 492.169 kb on - strand, within ttdA at 492.169 kb on - strand, within ttdA at 492.360 kb on + strand, within ttdA at 492.361 kb on - strand, within ttdA at 492.361 kb on - strand, within ttdA at 492.363 kb on + strand, within ttdA at 492.363 kb on + strand, within ttdA at 492.363 kb on + strand, within ttdA at 492.364 kb on - strand, within ttdA at 492.364 kb on - strand, within ttdA at 492.364 kb on - strand, within ttdA at 492.364 kb on - strand, within ttdA at 492.364 kb on - strand, within ttdA at 492.364 kb on - strand, within ttdA at 492.364 kb on - strand, within ttdA at 492.544 kb on - strand, within ttdA at 492.544 kb on - strand, within ttdA at 492.570 kb on + strand, within ttdA at 492.571 kb on - strand, within ttdA at 492.755 kb on + strand at 492.755 kb on + strand at 492.755 kb on + strand at 492.756 kb on - strand at 492.756 kb on - strand at 492.756 kb on - strand at 492.756 kb on - strand at 492.756 kb on - strand at 492.756 kb on - strand at 492.756 kb on - strand at 492.762 kb on + strand at 492.762 kb on + strand at 492.762 kb on + strand at 492.763 kb on - strand at 492.763 kb on - strand at 492.763 kb on - strand at 492.763 kb on - strand at 492.763 kb on - strand at 492.763 kb on - strand at 492.871 kb on - strand at 492.935 kb on + strand at 492.936 kb on - strand at 493.010 kb on - strand at 493.010 kb on - strand at 493.028 kb on + strand at 493.028 kb on + strand at 493.028 kb on + strand at 493.028 kb on + strand at 493.028 kb on + strand at 493.028 kb on + strand at 493.028 kb on + strand at 493.028 kb on + strand at 493.028 kb on + strand at 493.028 kb on + strand at 493.028 kb on + strand at 493.028 kb on + strand at 493.029 kb on - strand at 493.029 kb on - strand at 493.029 kb on - strand at 493.029 kb on - strand at 493.029 kb on - strand at 493.029 kb on - strand at 493.029 kb on - strand at 493.029 kb on - strand at 493.029 kb on - strand at 493.029 kb on - strand at 493.029 kb on - strand at 493.029 kb on - strand at 493.056 kb on + strand at 493.057 kb on - strand at 493.057 kb on - strand at 493.095 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_HOMOPIPES; pH5 remove 490,885 + OKGIIK_02110 0.79 -0.2 491,185 + -1.4 491,185 + -2.0 491,185 + -0.7 491,185 + -0.1 491,185 + -1.7 491,185 + +0.1 491,185 + -2.4 491,185 + -0.9 491,185 + -1.4 491,185 + -3.4 491,185 + -0.4 491,185 + -0.2 491,185 + -1.3 491,185 + -0.6 491,185 + -0.3 491,186 - -0.7 491,186 - -0.2 491,186 - +0.3 491,186 - -1.4 491,186 - +1.0 491,186 - +2.3 491,186 - +0.1 491,301 + -1.9 491,301 + -2.4 491,302 - +1.1 491,302 - -0.3 491,310 + -2.0 491,310 + -1.2 491,311 - +2.1 491,311 - -2.2 491,311 - +0.1 491,311 - -2.2 491,311 - -1.7 491,313 + -1.7 491,313 + -2.4 491,328 + -1.7 491,328 + -1.0 491,328 + -1.4 491,328 + +0.1 491,352 + -0.5 491,553 + ttdA OKGIIK_02115 0.20 +0.4 491,553 + ttdA OKGIIK_02115 0.20 +1.1 491,553 + ttdA OKGIIK_02115 0.20 +0.7 491,554 - ttdA OKGIIK_02115 0.20 -2.0 491,554 - ttdA OKGIIK_02115 0.20 -1.2 491,554 - ttdA OKGIIK_02115 0.20 +0.1 491,554 - ttdA OKGIIK_02115 0.20 +2.7 491,554 - ttdA OKGIIK_02115 0.20 +1.1 491,554 - ttdA OKGIIK_02115 0.20 -1.2 491,554 - ttdA OKGIIK_02115 0.20 -0.9 491,949 + ttdA OKGIIK_02115 0.46 -1.2 491,949 + ttdA OKGIIK_02115 0.46 -1.7 492,169 - ttdA OKGIIK_02115 0.61 -1.7 492,169 - ttdA OKGIIK_02115 0.61 -1.4 492,169 - ttdA OKGIIK_02115 0.61 -2.6 492,169 - ttdA OKGIIK_02115 0.61 +1.1 492,360 + ttdA OKGIIK_02115 0.73 -3.2 492,361 - ttdA OKGIIK_02115 0.73 -0.4 492,361 - ttdA OKGIIK_02115 0.73 -1.9 492,363 + ttdA OKGIIK_02115 0.74 -2.4 492,363 + ttdA OKGIIK_02115 0.74 +0.6 492,363 + ttdA OKGIIK_02115 0.74 -2.0 492,364 - ttdA OKGIIK_02115 0.74 -2.6 492,364 - ttdA OKGIIK_02115 0.74 -2.0 492,364 - ttdA OKGIIK_02115 0.74 -1.9 492,364 - ttdA OKGIIK_02115 0.74 -3.1 492,364 - ttdA OKGIIK_02115 0.74 +0.1 492,364 - ttdA OKGIIK_02115 0.74 -0.9 492,364 - ttdA OKGIIK_02115 0.74 +0.4 492,544 - ttdA OKGIIK_02115 0.85 -0.9 492,544 - ttdA OKGIIK_02115 0.85 -1.8 492,570 + ttdA OKGIIK_02115 0.87 -3.0 492,571 - ttdA OKGIIK_02115 0.87 -4.0 492,755 + -0.2 492,755 + +0.3 492,755 + -1.2 492,756 - +1.0 492,756 - +0.1 492,756 - -1.2 492,756 - +0.1 492,756 - -1.2 492,756 - -0.1 492,756 - -1.9 492,762 + -1.2 492,762 + -1.4 492,762 + -1.2 492,763 - -0.7 492,763 - +0.6 492,763 - -0.2 492,763 - +0.3 492,763 - -0.9 492,763 - -0.4 492,871 - -2.1 492,935 + +0.6 492,936 - +0.1 493,010 - +0.1 493,010 - -0.9 493,028 + -0.9 493,028 + -1.2 493,028 + -1.4 493,028 + -2.6 493,028 + -0.4 493,028 + +0.1 493,028 + -0.4 493,028 + -2.0 493,028 + -1.2 493,028 + -1.9 493,028 + +0.9 493,028 + +0.6 493,029 - -0.4 493,029 - -0.9 493,029 - -1.6 493,029 - -0.3 493,029 - -1.9 493,029 - -2.3 493,029 - -0.4 493,029 - +1.0 493,029 - -1.4 493,029 - -0.3 493,029 - -0.1 493,029 - -0.6 493,056 + +1.0 493,057 - +0.1 493,057 - +1.1 493,095 + -0.4
Or see this region's nucleotide sequence