Experiment: R2A_MES; pH5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ftsY and rsmD are separated by 74 nucleotides rsmD and coaD are separated by 45 nucleotides coaD and OKGIIK_02590 overlap by 8 nucleotides
OKGIIK_02575: ftsY - signal recognition particle-docking protein FtsY, at 604,620 to 605,759
ftsY
OKGIIK_02580: rsmD - 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD, at 605,834 to 606,409
rsmD
OKGIIK_02585: coaD - pantetheine-phosphate adenylyltransferase, at 606,455 to 606,994
coaD
OKGIIK_02590: OKGIIK_02590 - hypothetical protein, at 606,987 to 607,490
_02590
Position (kb) 605
606
607 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 605.794 kb on + strand at 605.794 kb on + strand at 605.795 kb on - strand at 605.795 kb on - strand at 605.795 kb on - strand at 605.795 kb on - strand at 605.795 kb on - strand at 605.795 kb on - strand at 605.795 kb on - strand at 605.795 kb on - strand at 605.795 kb on - strand at 605.795 kb on - strand at 605.795 kb on - strand at 605.795 kb on - strand at 605.795 kb on - strand at 605.795 kb on - strand at 605.795 kb on - strand at 605.795 kb on - strand at 605.795 kb on - strand at 605.795 kb on - strand at 605.795 kb on - strand at 605.795 kb on - strand at 605.810 kb on - strand at 606.194 kb on + strand, within rsmD at 606.194 kb on + strand, within rsmD at 606.194 kb on + strand, within rsmD at 606.194 kb on + strand, within rsmD at 606.194 kb on + strand, within rsmD at 606.194 kb on + strand, within rsmD at 606.194 kb on + strand, within rsmD at 606.194 kb on + strand, within rsmD at 606.195 kb on - strand, within rsmD at 606.195 kb on - strand, within rsmD at 606.195 kb on - strand, within rsmD at 606.195 kb on - strand, within rsmD at 606.195 kb on - strand, within rsmD at 606.296 kb on + strand, within rsmD at 606.296 kb on + strand, within rsmD at 606.296 kb on + strand, within rsmD at 606.296 kb on + strand, within rsmD at 606.296 kb on + strand, within rsmD at 606.296 kb on + strand, within rsmD at 606.296 kb on + strand, within rsmD at 606.296 kb on + strand, within rsmD at 606.296 kb on + strand, within rsmD at 606.296 kb on + strand, within rsmD at 606.296 kb on + strand, within rsmD at 606.296 kb on + strand, within rsmD at 606.296 kb on + strand, within rsmD at 606.296 kb on + strand, within rsmD at 606.296 kb on + strand, within rsmD at 606.296 kb on + strand, within rsmD at 606.296 kb on + strand, within rsmD at 606.296 kb on + strand, within rsmD at 606.296 kb on + strand, within rsmD at 606.296 kb on + strand, within rsmD at 606.296 kb on + strand, within rsmD at 606.296 kb on + strand, within rsmD at 606.297 kb on - strand, within rsmD at 606.297 kb on - strand, within rsmD at 606.297 kb on - strand, within rsmD at 606.297 kb on - strand, within rsmD at 606.297 kb on - strand, within rsmD at 606.297 kb on - strand, within rsmD at 606.297 kb on - strand, within rsmD at 606.297 kb on - strand, within rsmD at 606.297 kb on - strand, within rsmD at 606.297 kb on - strand, within rsmD at 606.297 kb on - strand, within rsmD at 606.297 kb on - strand, within rsmD at 606.297 kb on - strand, within rsmD at 606.297 kb on - strand, within rsmD at 606.297 kb on - strand, within rsmD at 606.297 kb on - strand, within rsmD at 606.297 kb on - strand, within rsmD at 606.297 kb on - strand, within rsmD at 606.297 kb on - strand, within rsmD at 606.297 kb on - strand, within rsmD at 606.297 kb on - strand, within rsmD at 606.297 kb on - strand, within rsmD at 606.389 kb on + strand at 606.389 kb on + strand at 606.390 kb on - strand at 606.407 kb on + strand at 606.412 kb on + strand at 606.412 kb on + strand at 606.412 kb on + strand at 606.412 kb on + strand at 606.412 kb on + strand at 606.412 kb on + strand at 606.412 kb on + strand at 606.412 kb on + strand at 606.412 kb on + strand at 606.412 kb on + strand at 606.412 kb on + strand at 606.412 kb on + strand at 606.412 kb on + strand at 606.412 kb on + strand at 606.412 kb on + strand at 606.412 kb on + strand at 606.412 kb on + strand at 606.412 kb on + strand at 606.831 kb on - strand, within coaD at 606.909 kb on + strand, within coaD at 606.909 kb on + strand, within coaD at 606.982 kb on + strand at 606.982 kb on + strand at 606.982 kb on + strand at 606.983 kb on - strand at 606.992 kb on + strand at 606.992 kb on + strand at 606.992 kb on + strand at 606.992 kb on + strand at 606.992 kb on + strand at 606.992 kb on + strand at 606.992 kb on + strand at 606.992 kb on + strand at 606.992 kb on + strand at 606.992 kb on + strand at 606.992 kb on + strand at 606.992 kb on + strand at 606.992 kb on + strand at 606.992 kb on + strand at 606.992 kb on + strand at 606.992 kb on + strand at 606.992 kb on + strand at 606.992 kb on + strand at 606.992 kb on + strand at 606.992 kb on + strand at 606.992 kb on + strand at 606.992 kb on + strand at 606.992 kb on + strand at 606.992 kb on + strand at 606.992 kb on + strand at 606.992 kb on + strand at 606.992 kb on + strand at 606.992 kb on + strand at 606.992 kb on + strand at 606.992 kb on + strand at 606.992 kb on + strand at 606.992 kb on + strand at 606.992 kb on + strand at 606.992 kb on + strand at 606.993 kb on - strand at 606.993 kb on - strand at 606.993 kb on - strand at 606.993 kb on - strand at 606.993 kb on - strand at 606.993 kb on - strand at 606.993 kb on - strand at 606.993 kb on - strand at 606.993 kb on - strand at 606.993 kb on - strand at 606.993 kb on - strand at 606.993 kb on - strand at 606.993 kb on - strand at 606.993 kb on - strand at 606.993 kb on - strand at 606.993 kb on - strand at 606.993 kb on - strand at 606.993 kb on - strand at 606.993 kb on - strand at 606.993 kb on - strand at 606.993 kb on - strand at 606.993 kb on - strand at 606.993 kb on - strand at 606.993 kb on - strand at 607.143 kb on + strand, within OKGIIK_02590 at 607.143 kb on + strand, within OKGIIK_02590 at 607.143 kb on + strand, within OKGIIK_02590 at 607.143 kb on + strand, within OKGIIK_02590 at 607.143 kb on + strand, within OKGIIK_02590 at 607.143 kb on + strand, within OKGIIK_02590 at 607.143 kb on + strand, within OKGIIK_02590 at 607.143 kb on + strand, within OKGIIK_02590 at 607.143 kb on + strand, within OKGIIK_02590 at 607.144 kb on - strand, within OKGIIK_02590 at 607.144 kb on - strand, within OKGIIK_02590 at 607.144 kb on - strand, within OKGIIK_02590 at 607.144 kb on - strand, within OKGIIK_02590 at 607.144 kb on - strand, within OKGIIK_02590 at 607.144 kb on - strand, within OKGIIK_02590 at 607.144 kb on - strand, within OKGIIK_02590 at 607.202 kb on + strand, within OKGIIK_02590 at 607.203 kb on + strand, within OKGIIK_02590 at 607.203 kb on + strand, within OKGIIK_02590 at 607.203 kb on + strand, within OKGIIK_02590 at 607.203 kb on + strand, within OKGIIK_02590 at 607.203 kb on + strand, within OKGIIK_02590 at 607.203 kb on + strand, within OKGIIK_02590 at 607.203 kb on + strand, within OKGIIK_02590 at 607.203 kb on + strand, within OKGIIK_02590 at 607.203 kb on + strand, within OKGIIK_02590 at 607.203 kb on + strand, within OKGIIK_02590 at 607.204 kb on - strand, within OKGIIK_02590 at 607.204 kb on - strand, within OKGIIK_02590 at 607.204 kb on - strand, within OKGIIK_02590 at 607.204 kb on - strand, within OKGIIK_02590 at 607.204 kb on - strand, within OKGIIK_02590 at 607.204 kb on - strand, within OKGIIK_02590 at 607.204 kb on - strand, within OKGIIK_02590 at 607.204 kb on - strand, within OKGIIK_02590 at 607.204 kb on - strand, within OKGIIK_02590 at 607.204 kb on - strand, within OKGIIK_02590
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_MES; pH5 remove 605,794 + -1.9 605,794 + -0.3 605,795 - -2.7 605,795 - +1.3 605,795 - -1.3 605,795 - -1.9 605,795 - +1.3 605,795 - -1.1 605,795 - -0.7 605,795 - -2.4 605,795 - +0.4 605,795 - -2.3 605,795 - +2.3 605,795 - -2.8 605,795 - -1.4 605,795 - -1.9 605,795 - +0.8 605,795 - -0.7 605,795 - -1.6 605,795 - -2.7 605,795 - +0.3 605,795 - -1.0 605,810 - -1.6 606,194 + rsmD OKGIIK_02580 0.62 -1.3 606,194 + rsmD OKGIIK_02580 0.62 +3.1 606,194 + rsmD OKGIIK_02580 0.62 -0.1 606,194 + rsmD OKGIIK_02580 0.62 +0.3 606,194 + rsmD OKGIIK_02580 0.62 -0.7 606,194 + rsmD OKGIIK_02580 0.62 -2.1 606,194 + rsmD OKGIIK_02580 0.62 +0.3 606,194 + rsmD OKGIIK_02580 0.62 -1.7 606,195 - rsmD OKGIIK_02580 0.63 -0.3 606,195 - rsmD OKGIIK_02580 0.63 -0.6 606,195 - rsmD OKGIIK_02580 0.63 -1.9 606,195 - rsmD OKGIIK_02580 0.63 +1.8 606,195 - rsmD OKGIIK_02580 0.63 -2.6 606,296 + rsmD OKGIIK_02580 0.80 -3.1 606,296 + rsmD OKGIIK_02580 0.80 -2.1 606,296 + rsmD OKGIIK_02580 0.80 -2.7 606,296 + rsmD OKGIIK_02580 0.80 -2.3 606,296 + rsmD OKGIIK_02580 0.80 -1.1 606,296 + rsmD OKGIIK_02580 0.80 -2.8 606,296 + rsmD OKGIIK_02580 0.80 -0.9 606,296 + rsmD OKGIIK_02580 0.80 -1.6 606,296 + rsmD OKGIIK_02580 0.80 -1.3 606,296 + rsmD OKGIIK_02580 0.80 -2.7 606,296 + rsmD OKGIIK_02580 0.80 -1.1 606,296 + rsmD OKGIIK_02580 0.80 +0.3 606,296 + rsmD OKGIIK_02580 0.80 -0.9 606,296 + rsmD OKGIIK_02580 0.80 -1.9 606,296 + rsmD OKGIIK_02580 0.80 -1.3 606,296 + rsmD OKGIIK_02580 0.80 -1.2 606,296 + rsmD OKGIIK_02580 0.80 -3.1 606,296 + rsmD OKGIIK_02580 0.80 -2.4 606,296 + rsmD OKGIIK_02580 0.80 +1.8 606,296 + rsmD OKGIIK_02580 0.80 -2.1 606,296 + rsmD OKGIIK_02580 0.80 +0.3 606,296 + rsmD OKGIIK_02580 0.80 -1.5 606,297 - rsmD OKGIIK_02580 0.80 -0.7 606,297 - rsmD OKGIIK_02580 0.80 -1.3 606,297 - rsmD OKGIIK_02580 0.80 -2.7 606,297 - rsmD OKGIIK_02580 0.80 -4.0 606,297 - rsmD OKGIIK_02580 0.80 -2.4 606,297 - rsmD OKGIIK_02580 0.80 -1.7 606,297 - rsmD OKGIIK_02580 0.80 -0.7 606,297 - rsmD OKGIIK_02580 0.80 -2.4 606,297 - rsmD OKGIIK_02580 0.80 -0.6 606,297 - rsmD OKGIIK_02580 0.80 -0.1 606,297 - rsmD OKGIIK_02580 0.80 +0.0 606,297 - rsmD OKGIIK_02580 0.80 -0.1 606,297 - rsmD OKGIIK_02580 0.80 -1.3 606,297 - rsmD OKGIIK_02580 0.80 -1.9 606,297 - rsmD OKGIIK_02580 0.80 -2.9 606,297 - rsmD OKGIIK_02580 0.80 -2.2 606,297 - rsmD OKGIIK_02580 0.80 -0.2 606,297 - rsmD OKGIIK_02580 0.80 -2.3 606,297 - rsmD OKGIIK_02580 0.80 +0.2 606,297 - rsmD OKGIIK_02580 0.80 -2.2 606,297 - rsmD OKGIIK_02580 0.80 -1.9 606,297 - rsmD OKGIIK_02580 0.80 +1.3 606,389 + -3.9 606,389 + -0.7 606,390 - +0.3 606,407 + -1.1 606,412 + -1.6 606,412 + +1.3 606,412 + -0.3 606,412 + -0.2 606,412 + -3.3 606,412 + -0.3 606,412 + -1.1 606,412 + -0.1 606,412 + -1.7 606,412 + +0.7 606,412 + -1.3 606,412 + -1.1 606,412 + -1.3 606,412 + -3.3 606,412 + -1.3 606,412 + -2.2 606,412 + -2.2 606,412 + -1.1 606,831 - coaD OKGIIK_02585 0.70 +1.3 606,909 + coaD OKGIIK_02585 0.84 -1.1 606,909 + coaD OKGIIK_02585 0.84 +0.8 606,982 + -3.7 606,982 + -2.3 606,982 + +1.3 606,983 - -2.7 606,992 + -0.4 606,992 + +1.3 606,992 + -2.2 606,992 + -1.3 606,992 + -2.9 606,992 + -0.9 606,992 + -2.2 606,992 + -1.2 606,992 + -0.7 606,992 + +1.3 606,992 + -1.4 606,992 + -1.7 606,992 + -2.0 606,992 + -1.4 606,992 + -3.7 606,992 + -1.4 606,992 + -1.1 606,992 + -4.9 606,992 + -2.1 606,992 + -0.7 606,992 + -1.7 606,992 + -0.3 606,992 + -1.3 606,992 + -4.5 606,992 + -3.2 606,992 + +2.1 606,992 + -1.2 606,992 + -0.6 606,992 + -3.1 606,992 + -1.7 606,992 + -2.8 606,992 + -1.6 606,992 + -2.3 606,992 + -1.7 606,993 - -1.9 606,993 - -1.2 606,993 - -1.4 606,993 - -1.6 606,993 - -0.1 606,993 - -1.9 606,993 - +0.8 606,993 - -1.7 606,993 - -2.4 606,993 - -0.7 606,993 - -1.6 606,993 - -1.1 606,993 - -0.3 606,993 - -1.3 606,993 - -1.2 606,993 - -2.1 606,993 - -2.2 606,993 - -1.6 606,993 - -0.7 606,993 - -2.6 606,993 - -2.2 606,993 - -2.7 606,993 - -1.6 606,993 - -1.7 607,143 + OKGIIK_02590 0.31 -2.2 607,143 + OKGIIK_02590 0.31 -1.7 607,143 + OKGIIK_02590 0.31 -1.8 607,143 + OKGIIK_02590 0.31 -2.7 607,143 + OKGIIK_02590 0.31 -2.9 607,143 + OKGIIK_02590 0.31 -3.5 607,143 + OKGIIK_02590 0.31 -3.9 607,143 + OKGIIK_02590 0.31 -4.0 607,143 + OKGIIK_02590 0.31 -0.6 607,144 - OKGIIK_02590 0.31 -2.1 607,144 - OKGIIK_02590 0.31 -1.3 607,144 - OKGIIK_02590 0.31 -3.4 607,144 - OKGIIK_02590 0.31 -0.7 607,144 - OKGIIK_02590 0.31 -1.7 607,144 - OKGIIK_02590 0.31 -1.9 607,144 - OKGIIK_02590 0.31 -0.5 607,202 + OKGIIK_02590 0.43 -0.6 607,203 + OKGIIK_02590 0.43 -3.4 607,203 + OKGIIK_02590 0.43 -0.3 607,203 + OKGIIK_02590 0.43 +1.3 607,203 + OKGIIK_02590 0.43 -3.0 607,203 + OKGIIK_02590 0.43 -3.4 607,203 + OKGIIK_02590 0.43 -1.9 607,203 + OKGIIK_02590 0.43 -1.7 607,203 + OKGIIK_02590 0.43 -0.3 607,203 + OKGIIK_02590 0.43 -1.6 607,203 + OKGIIK_02590 0.43 -1.2 607,204 - OKGIIK_02590 0.43 -1.3 607,204 - OKGIIK_02590 0.43 +0.3 607,204 - OKGIIK_02590 0.43 -0.7 607,204 - OKGIIK_02590 0.43 -1.6 607,204 - OKGIIK_02590 0.43 -0.9 607,204 - OKGIIK_02590 0.43 -2.7 607,204 - OKGIIK_02590 0.43 -1.3 607,204 - OKGIIK_02590 0.43 -2.7 607,204 - OKGIIK_02590 0.43 -0.7 607,204 - OKGIIK_02590 0.43 -3.9
Or see this region's nucleotide sequence