Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_02180

Experiment: R2A_MES; pH5

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOKGIIK_02175 and wcaG are separated by 7 nucleotideswcaG and OKGIIK_02185 are separated by 227 nucleotides OKGIIK_02175: OKGIIK_02175 - hypothetical protein, at 510,602 to 512,281 _02175 OKGIIK_02180: wcaG - Nucleoside-diphosphate-sugar epimerase, at 512,289 to 513,128 wcaG OKGIIK_02185: OKGIIK_02185 - Penicillin-binding protein 1B, at 513,356 to 515,689 _02185 Position (kb) 512 513 514Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 511.326 kb on - strand, within OKGIIK_02175at 511.931 kb on + strand, within OKGIIK_02175at 511.931 kb on + strand, within OKGIIK_02175at 511.931 kb on + strand, within OKGIIK_02175at 511.931 kb on + strand, within OKGIIK_02175at 511.931 kb on + strand, within OKGIIK_02175at 511.931 kb on + strand, within OKGIIK_02175at 511.932 kb on - strand, within OKGIIK_02175at 511.932 kb on - strand, within OKGIIK_02175at 511.941 kb on - strand, within OKGIIK_02175at 511.941 kb on - strand, within OKGIIK_02175at 512.700 kb on + strand, within wcaGat 512.700 kb on + strand, within wcaGat 512.727 kb on - strand, within wcaGat 513.126 kb on + strandat 513.126 kb on + strandat 513.126 kb on + strandat 513.127 kb on - strandat 513.127 kb on - strandat 513.166 kb on + strandat 513.166 kb on + strandat 513.167 kb on - strandat 513.167 kb on - strandat 513.167 kb on - strandat 513.167 kb on - strandat 513.311 kb on + strandat 513.311 kb on + strandat 513.311 kb on + strandat 513.311 kb on + strandat 513.311 kb on + strandat 513.311 kb on + strandat 513.311 kb on + strandat 513.311 kb on + strandat 513.311 kb on + strandat 513.311 kb on + strandat 513.311 kb on + strandat 513.311 kb on + strandat 513.311 kb on + strandat 513.311 kb on + strandat 513.311 kb on + strandat 513.311 kb on + strandat 513.311 kb on + strandat 513.311 kb on + strandat 513.311 kb on + strandat 513.311 kb on + strandat 513.311 kb on + strandat 513.311 kb on + strandat 513.311 kb on + strandat 513.311 kb on + strandat 513.311 kb on + strandat 513.312 kb on - strandat 513.312 kb on - strandat 513.312 kb on - strandat 513.312 kb on - strandat 513.312 kb on - strandat 513.312 kb on - strandat 513.312 kb on - strandat 513.312 kb on - strandat 513.312 kb on - strandat 513.312 kb on - strandat 513.312 kb on - strandat 513.312 kb on - strandat 513.312 kb on - strandat 513.312 kb on - strandat 513.312 kb on - strandat 513.452 kb on + strandat 513.452 kb on + strandat 513.452 kb on + strandat 513.452 kb on + strandat 513.453 kb on - strandat 513.453 kb on - strandat 513.453 kb on - strandat 513.524 kb on + strandat 513.524 kb on + strandat 513.525 kb on - strandat 513.525 kb on - strandat 513.525 kb on - strandat 513.525 kb on - strandat 513.602 kb on + strand, within OKGIIK_02185at 513.602 kb on + strand, within OKGIIK_02185at 513.602 kb on + strand, within OKGIIK_02185at 513.602 kb on + strand, within OKGIIK_02185at 513.603 kb on - strand, within OKGIIK_02185at 513.659 kb on + strand, within OKGIIK_02185at 513.660 kb on - strand, within OKGIIK_02185at 513.660 kb on - strand, within OKGIIK_02185at 513.660 kb on - strand, within OKGIIK_02185at 513.660 kb on - strand, within OKGIIK_02185at 513.680 kb on + strand, within OKGIIK_02185at 513.681 kb on - strand, within OKGIIK_02185at 513.821 kb on + strand, within OKGIIK_02185at 513.821 kb on + strand, within OKGIIK_02185at 513.821 kb on + strand, within OKGIIK_02185at 513.821 kb on + strand, within OKGIIK_02185at 513.822 kb on - strand, within OKGIIK_02185at 513.822 kb on - strand, within OKGIIK_02185at 513.822 kb on - strand, within OKGIIK_02185at 513.822 kb on - strand, within OKGIIK_02185at 513.985 kb on + strand, within OKGIIK_02185at 513.985 kb on + strand, within OKGIIK_02185at 513.985 kb on + strand, within OKGIIK_02185at 513.985 kb on + strand, within OKGIIK_02185at 513.985 kb on + strand, within OKGIIK_02185at 513.985 kb on + strand, within OKGIIK_02185at 513.985 kb on + strand, within OKGIIK_02185at 513.985 kb on + strand, within OKGIIK_02185at 513.986 kb on - strand, within OKGIIK_02185at 513.986 kb on - strand, within OKGIIK_02185at 513.986 kb on - strand, within OKGIIK_02185at 513.986 kb on - strand, within OKGIIK_02185at 513.986 kb on - strand, within OKGIIK_02185at 514.106 kb on + strand, within OKGIIK_02185at 514.106 kb on + strand, within OKGIIK_02185at 514.106 kb on + strand, within OKGIIK_02185at 514.106 kb on + strand, within OKGIIK_02185at 514.106 kb on + strand, within OKGIIK_02185at 514.106 kb on + strand, within OKGIIK_02185at 514.106 kb on + strand, within OKGIIK_02185at 514.106 kb on + strand, within OKGIIK_02185at 514.106 kb on + strand, within OKGIIK_02185at 514.106 kb on + strand, within OKGIIK_02185at 514.107 kb on - strand, within OKGIIK_02185at 514.107 kb on - strand, within OKGIIK_02185at 514.107 kb on - strand, within OKGIIK_02185at 514.107 kb on - strand, within OKGIIK_02185at 514.107 kb on - strand, within OKGIIK_02185at 514.107 kb on - strand, within OKGIIK_02185at 514.107 kb on - strand, within OKGIIK_02185at 514.107 kb on - strand, within OKGIIK_02185at 514.107 kb on - strand, within OKGIIK_02185at 514.107 kb on - strand, within OKGIIK_02185at 514.107 kb on - strand, within OKGIIK_02185at 514.107 kb on - strand, within OKGIIK_02185at 514.107 kb on - strand, within OKGIIK_02185at 514.107 kb on - strand, within OKGIIK_02185

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A_MES; pH5
remove
511,326 - OKGIIK_02175 0.43 -1.7
511,931 + OKGIIK_02175 0.79 -1.1
511,931 + OKGIIK_02175 0.79 +2.3
511,931 + OKGIIK_02175 0.79 +2.0
511,931 + OKGIIK_02175 0.79 -0.7
511,931 + OKGIIK_02175 0.79 -1.1
511,931 + OKGIIK_02175 0.79 +1.3
511,932 - OKGIIK_02175 0.79 -0.7
511,932 - OKGIIK_02175 0.79 -0.7
511,941 - OKGIIK_02175 0.80 -1.3
511,941 - OKGIIK_02175 0.80 +0.1
512,700 + wcaG OKGIIK_02180 0.49 -2.1
512,700 + wcaG OKGIIK_02180 0.49 -2.4
512,727 - wcaG OKGIIK_02180 0.52 -2.2
513,126 + -2.2
513,126 + +0.7
513,126 + +0.9
513,127 - +3.6
513,127 - +1.3
513,166 + +0.5
513,166 + +0.6
513,167 - -1.9
513,167 - -0.6
513,167 - -1.1
513,167 - -1.3
513,311 + -1.1
513,311 + -1.3
513,311 + -0.7
513,311 + -0.3
513,311 + -1.3
513,311 + -1.6
513,311 + -1.1
513,311 + -0.3
513,311 + +0.3
513,311 + +2.3
513,311 + -0.7
513,311 + +1.0
513,311 + -0.8
513,311 + -0.8
513,311 + +0.3
513,311 + -1.6
513,311 + -1.9
513,311 + -2.4
513,311 + -1.6
513,311 + +0.7
513,311 + -0.3
513,311 + -3.0
513,311 + +1.6
513,311 + -1.7
513,311 + -0.3
513,312 - +0.9
513,312 - +3.6
513,312 - -0.2
513,312 - -0.9
513,312 - -0.7
513,312 - -2.6
513,312 - -2.6
513,312 - -0.7
513,312 - -2.2
513,312 - -0.3
513,312 - +1.3
513,312 - +0.3
513,312 - -1.6
513,312 - -0.3
513,312 - -1.3
513,452 + -2.3
513,452 + -1.3
513,452 + -1.9
513,452 + -2.5
513,453 - +1.3
513,453 - -1.3
513,453 - -0.3
513,524 + +0.2
513,524 + -3.6
513,525 - -0.2
513,525 - +2.6
513,525 - +1.3
513,525 - -1.3
513,602 + OKGIIK_02185 0.11 -0.7
513,602 + OKGIIK_02185 0.11 -0.3
513,602 + OKGIIK_02185 0.11 -0.2
513,602 + OKGIIK_02185 0.11 -0.7
513,603 - OKGIIK_02185 0.11 -0.6
513,659 + OKGIIK_02185 0.13 -0.9
513,660 - OKGIIK_02185 0.13 -0.4
513,660 - OKGIIK_02185 0.13 -1.9
513,660 - OKGIIK_02185 0.13 -1.6
513,660 - OKGIIK_02185 0.13 +1.3
513,680 + OKGIIK_02185 0.14 -1.1
513,681 - OKGIIK_02185 0.14 +1.5
513,821 + OKGIIK_02185 0.20 +0.7
513,821 + OKGIIK_02185 0.20 -1.9
513,821 + OKGIIK_02185 0.20 -1.6
513,821 + OKGIIK_02185 0.20 -0.9
513,822 - OKGIIK_02185 0.20 -1.6
513,822 - OKGIIK_02185 0.20 +0.3
513,822 - OKGIIK_02185 0.20 -0.7
513,822 - OKGIIK_02185 0.20 -2.1
513,985 + OKGIIK_02185 0.27 -2.0
513,985 + OKGIIK_02185 0.27 -1.1
513,985 + OKGIIK_02185 0.27 +2.6
513,985 + OKGIIK_02185 0.27 +1.3
513,985 + OKGIIK_02185 0.27 +0.7
513,985 + OKGIIK_02185 0.27 +0.3
513,985 + OKGIIK_02185 0.27 -1.7
513,985 + OKGIIK_02185 0.27 +0.0
513,986 - OKGIIK_02185 0.27 -3.2
513,986 - OKGIIK_02185 0.27 -0.2
513,986 - OKGIIK_02185 0.27 -1.3
513,986 - OKGIIK_02185 0.27 -2.2
513,986 - OKGIIK_02185 0.27 -3.1
514,106 + OKGIIK_02185 0.32 +1.3
514,106 + OKGIIK_02185 0.32 -1.7
514,106 + OKGIIK_02185 0.32 +0.7
514,106 + OKGIIK_02185 0.32 -2.2
514,106 + OKGIIK_02185 0.32 -1.1
514,106 + OKGIIK_02185 0.32 -1.1
514,106 + OKGIIK_02185 0.32 -1.4
514,106 + OKGIIK_02185 0.32 +0.7
514,106 + OKGIIK_02185 0.32 +0.9
514,106 + OKGIIK_02185 0.32 -1.1
514,107 - OKGIIK_02185 0.32 -1.1
514,107 - OKGIIK_02185 0.32 +0.0
514,107 - OKGIIK_02185 0.32 -0.2
514,107 - OKGIIK_02185 0.32 +0.3
514,107 - OKGIIK_02185 0.32 +0.3
514,107 - OKGIIK_02185 0.32 -2.1
514,107 - OKGIIK_02185 0.32 -1.9
514,107 - OKGIIK_02185 0.32 -1.1
514,107 - OKGIIK_02185 0.32 -1.2
514,107 - OKGIIK_02185 0.32 -2.4
514,107 - OKGIIK_02185 0.32 -1.7
514,107 - OKGIIK_02185 0.32 -0.7
514,107 - OKGIIK_02185 0.32 -1.9
514,107 - OKGIIK_02185 0.32 -0.3

Or see this region's nucleotide sequence