Experiment: R2A_MES; pH5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_00255 and OKGIIK_00260 are separated by 54 nucleotides OKGIIK_00260 and OKGIIK_00265 are separated by 46 nucleotides OKGIIK_00265 and OKGIIK_00270 are separated by 223 nucleotides OKGIIK_00270 and OKGIIK_00275 are separated by 656 nucleotides
OKGIIK_00255: OKGIIK_00255 - Transglut-core3 domain-containing protein, at 64,880 to 65,557
_00255
OKGIIK_00260: OKGIIK_00260 - hypothetical protein, at 65,612 to 65,761
_00260
OKGIIK_00265: OKGIIK_00265 - Lasso peptide StcA, at 65,808 to 65,948
_00265
OKGIIK_00270: OKGIIK_00270 - Transcriptional regulator, at 66,172 to 66,801
_00270
OKGIIK_00275: OKGIIK_00275 - Antitoxin, at 67,458 to 67,814
_00275
Position (kb) 66
67 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 65.261 kb on + strand, within OKGIIK_00255 at 65.262 kb on - strand, within OKGIIK_00255 at 65.262 kb on - strand, within OKGIIK_00255 at 65.372 kb on + strand, within OKGIIK_00255 at 65.372 kb on + strand, within OKGIIK_00255 at 65.373 kb on - strand, within OKGIIK_00255 at 65.373 kb on - strand, within OKGIIK_00255 at 65.373 kb on - strand, within OKGIIK_00255 at 65.373 kb on - strand, within OKGIIK_00255 at 65.373 kb on - strand, within OKGIIK_00255 at 65.373 kb on - strand, within OKGIIK_00255 at 65.396 kb on + strand, within OKGIIK_00255 at 65.397 kb on - strand, within OKGIIK_00255 at 65.430 kb on + strand, within OKGIIK_00255 at 65.430 kb on + strand, within OKGIIK_00255 at 65.431 kb on - strand, within OKGIIK_00255 at 65.431 kb on - strand, within OKGIIK_00255 at 65.431 kb on - strand, within OKGIIK_00255 at 65.431 kb on - strand, within OKGIIK_00255 at 65.473 kb on - strand, within OKGIIK_00255 at 65.473 kb on - strand, within OKGIIK_00255 at 65.547 kb on + strand at 65.548 kb on - strand at 65.548 kb on - strand at 65.548 kb on - strand at 65.613 kb on + strand at 65.613 kb on + strand at 65.732 kb on - strand, within OKGIIK_00260 at 65.822 kb on + strand, within OKGIIK_00265 at 65.822 kb on + strand, within OKGIIK_00265 at 65.997 kb on + strand at 65.997 kb on + strand at 65.997 kb on + strand at 65.997 kb on + strand at 65.998 kb on - strand at 65.998 kb on - strand at 65.998 kb on - strand at 65.998 kb on - strand at 65.998 kb on - strand at 66.028 kb on + strand at 66.028 kb on + strand at 66.028 kb on + strand at 66.029 kb on - strand at 66.029 kb on - strand at 66.029 kb on - strand at 66.051 kb on - strand at 66.051 kb on - strand at 66.077 kb on + strand at 66.077 kb on + strand at 66.077 kb on + strand at 66.078 kb on - strand at 66.078 kb on - strand at 66.078 kb on - strand at 66.129 kb on + strand at 66.129 kb on + strand at 66.129 kb on + strand at 66.129 kb on + strand at 66.129 kb on + strand at 66.129 kb on + strand at 66.129 kb on + strand at 66.130 kb on - strand at 66.160 kb on + strand at 66.161 kb on - strand at 66.161 kb on - strand at 66.173 kb on + strand at 66.173 kb on + strand at 66.173 kb on + strand at 66.182 kb on + strand at 66.182 kb on + strand at 66.182 kb on + strand at 66.182 kb on + strand at 66.182 kb on + strand at 66.182 kb on + strand at 66.183 kb on - strand at 66.245 kb on + strand, within OKGIIK_00270 at 66.245 kb on + strand, within OKGIIK_00270 at 66.246 kb on - strand, within OKGIIK_00270 at 66.246 kb on - strand, within OKGIIK_00270 at 66.356 kb on - strand, within OKGIIK_00270 at 66.560 kb on + strand, within OKGIIK_00270 at 66.560 kb on + strand, within OKGIIK_00270 at 66.560 kb on + strand, within OKGIIK_00270 at 66.560 kb on + strand, within OKGIIK_00270 at 66.561 kb on - strand, within OKGIIK_00270 at 66.561 kb on - strand, within OKGIIK_00270 at 66.561 kb on - strand, within OKGIIK_00270 at 66.651 kb on - strand, within OKGIIK_00270 at 66.672 kb on + strand, within OKGIIK_00270 at 66.673 kb on - strand, within OKGIIK_00270 at 66.673 kb on - strand, within OKGIIK_00270 at 66.732 kb on - strand, within OKGIIK_00270 at 66.801 kb on + strand at 66.801 kb on + strand at 66.801 kb on + strand at 66.801 kb on + strand at 66.802 kb on - strand at 66.802 kb on - strand at 66.802 kb on - strand at 66.802 kb on - strand at 66.867 kb on + strand at 66.867 kb on + strand at 66.867 kb on + strand at 66.867 kb on + strand at 66.868 kb on - strand at 66.868 kb on - strand at 66.868 kb on - strand at 66.868 kb on - strand at 66.868 kb on - strand at 66.868 kb on - strand at 66.919 kb on + strand at 66.920 kb on - strand at 66.936 kb on + strand at 66.937 kb on - strand at 66.937 kb on - strand at 67.194 kb on + strand at 67.194 kb on + strand at 67.194 kb on + strand at 67.194 kb on + strand at 67.194 kb on + strand at 67.194 kb on + strand at 67.194 kb on + strand at 67.194 kb on + strand at 67.194 kb on + strand at 67.194 kb on + strand at 67.194 kb on + strand at 67.194 kb on + strand at 67.194 kb on + strand at 67.194 kb on + strand at 67.194 kb on + strand at 67.194 kb on + strand at 67.194 kb on + strand at 67.194 kb on + strand at 67.194 kb on + strand at 67.194 kb on + strand at 67.195 kb on - strand at 67.195 kb on - strand at 67.195 kb on - strand at 67.195 kb on - strand at 67.195 kb on - strand at 67.195 kb on - strand at 67.195 kb on - strand at 67.195 kb on - strand at 67.195 kb on - strand at 67.195 kb on - strand at 67.195 kb on - strand at 67.195 kb on - strand at 67.195 kb on - strand at 67.195 kb on - strand at 67.195 kb on - strand at 67.195 kb on - strand at 67.195 kb on - strand at 67.195 kb on - strand at 67.195 kb on - strand at 67.195 kb on - strand at 67.195 kb on - strand at 67.400 kb on + strand at 67.401 kb on - strand at 67.425 kb on - strand at 67.428 kb on - strand at 67.626 kb on + strand, within OKGIIK_00275 at 67.626 kb on + strand, within OKGIIK_00275 at 67.626 kb on + strand, within OKGIIK_00275 at 67.627 kb on - strand, within OKGIIK_00275
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_MES; pH5 remove 65,261 + OKGIIK_00255 0.56 +1.3 65,262 - OKGIIK_00255 0.56 +0.7 65,262 - OKGIIK_00255 0.56 +2.3 65,372 + OKGIIK_00255 0.73 +0.2 65,372 + OKGIIK_00255 0.73 -2.0 65,373 - OKGIIK_00255 0.73 +1.3 65,373 - OKGIIK_00255 0.73 -1.6 65,373 - OKGIIK_00255 0.73 +1.3 65,373 - OKGIIK_00255 0.73 -1.2 65,373 - OKGIIK_00255 0.73 -0.4 65,373 - OKGIIK_00255 0.73 -2.2 65,396 + OKGIIK_00255 0.76 -0.7 65,397 - OKGIIK_00255 0.76 +2.7 65,430 + OKGIIK_00255 0.81 -0.5 65,430 + OKGIIK_00255 0.81 -2.1 65,431 - OKGIIK_00255 0.81 -0.2 65,431 - OKGIIK_00255 0.81 -2.4 65,431 - OKGIIK_00255 0.81 -2.0 65,431 - OKGIIK_00255 0.81 -1.1 65,473 - OKGIIK_00255 0.87 +1.3 65,473 - OKGIIK_00255 0.87 +1.7 65,547 + +0.5 65,548 - -1.7 65,548 - -0.2 65,548 - +1.3 65,613 + -1.2 65,613 + -1.6 65,732 - OKGIIK_00260 0.80 -0.5 65,822 + OKGIIK_00265 0.10 -0.7 65,822 + OKGIIK_00265 0.10 -1.7 65,997 + -1.8 65,997 + -1.7 65,997 + -1.0 65,997 + -0.2 65,998 - -2.9 65,998 - -1.5 65,998 - -2.1 65,998 - +0.3 65,998 - -1.5 66,028 + +0.3 66,028 + +1.3 66,028 + -3.0 66,029 - +1.7 66,029 - -2.0 66,029 - -0.2 66,051 - +0.5 66,051 - -1.2 66,077 + -0.4 66,077 + -0.9 66,077 + +0.8 66,078 - -0.7 66,078 - +1.3 66,078 - -2.1 66,129 + -0.2 66,129 + -1.2 66,129 + -0.2 66,129 + -1.4 66,129 + -0.2 66,129 + -0.5 66,129 + -2.2 66,130 - -2.7 66,160 + -2.1 66,161 - +1.1 66,161 - +0.3 66,173 + +0.5 66,173 + -1.2 66,173 + -1.5 66,182 + -0.7 66,182 + +0.0 66,182 + +0.9 66,182 + -1.5 66,182 + -0.2 66,182 + -2.2 66,183 - +1.3 66,245 + OKGIIK_00270 0.12 -0.7 66,245 + OKGIIK_00270 0.12 -1.2 66,246 - OKGIIK_00270 0.12 -2.0 66,246 - OKGIIK_00270 0.12 +3.3 66,356 - OKGIIK_00270 0.29 -1.2 66,560 + OKGIIK_00270 0.62 -2.1 66,560 + OKGIIK_00270 0.62 -1.5 66,560 + OKGIIK_00270 0.62 -1.8 66,560 + OKGIIK_00270 0.62 -0.2 66,561 - OKGIIK_00270 0.62 -2.0 66,561 - OKGIIK_00270 0.62 -0.2 66,561 - OKGIIK_00270 0.62 -0.7 66,651 - OKGIIK_00270 0.76 -1.8 66,672 + OKGIIK_00270 0.79 -2.4 66,673 - OKGIIK_00270 0.80 -2.8 66,673 - OKGIIK_00270 0.80 -0.9 66,732 - OKGIIK_00270 0.89 +0.3 66,801 + -2.1 66,801 + -1.5 66,801 + -1.7 66,801 + +0.6 66,802 - -1.4 66,802 - +1.3 66,802 - -1.5 66,802 - -2.4 66,867 + -0.8 66,867 + -0.7 66,867 + -0.3 66,867 + -2.9 66,868 - +0.7 66,868 - -1.2 66,868 - -1.5 66,868 - -0.5 66,868 - +0.3 66,868 - -0.2 66,919 + +0.3 66,920 - -1.1 66,936 + -0.7 66,937 - -1.8 66,937 - +0.2 67,194 + -2.0 67,194 + +0.1 67,194 + -1.2 67,194 + -1.5 67,194 + -0.1 67,194 + -3.2 67,194 + -2.0 67,194 + -1.1 67,194 + -0.5 67,194 + +0.1 67,194 + -0.5 67,194 + -1.2 67,194 + +0.6 67,194 + -0.2 67,194 + -1.5 67,194 + -2.2 67,194 + -0.7 67,194 + -1.5 67,194 + +0.3 67,194 + +1.9 67,195 - -0.2 67,195 - -2.1 67,195 - +0.8 67,195 - +2.2 67,195 - -2.4 67,195 - -0.2 67,195 - +0.0 67,195 - -1.2 67,195 - +1.3 67,195 - -0.5 67,195 - -1.4 67,195 - -2.2 67,195 - -1.5 67,195 - -0.1 67,195 - -0.2 67,195 - -0.2 67,195 - -2.0 67,195 - -0.4 67,195 - -1.0 67,195 - +0.9 67,195 - -0.1 67,400 + +1.6 67,401 - +0.5 67,425 - -0.7 67,428 - +0.3 67,626 + OKGIIK_00275 0.47 -2.8 67,626 + OKGIIK_00275 0.47 -0.9 67,626 + OKGIIK_00275 0.47 -0.2 67,627 - OKGIIK_00275 0.47 -1.7
Or see this region's nucleotide sequence