Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_03425

Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 2 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_03415 and OKGIIK_03420 are separated by 20 nucleotidesOKGIIK_03420 and OKGIIK_03425 are separated by 84 nucleotidesOKGIIK_03425 and OKGIIK_03430 are separated by 28 nucleotidesOKGIIK_03430 and OKGIIK_03435 are separated by 89 nucleotides OKGIIK_03415: OKGIIK_03415 - Alpha/beta hydrolase, at 762,289 to 763,299 _03415 OKGIIK_03420: OKGIIK_03420 - hypothetical protein, at 763,320 to 763,457 _03420 OKGIIK_03425: OKGIIK_03425 - AraC family transcriptional regulator, at 763,542 to 764,378 _03425 OKGIIK_03430: OKGIIK_03430 - N-acetylmuramoyl-L-alanine amidase, at 764,407 to 764,961 _03430 OKGIIK_03435: OKGIIK_03435 - Alpha/beta hydrolase, at 765,051 to 765,578 _03435 Position (kb) 763 764 765Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 762.549 kb on - strand, within OKGIIK_03415at 762.549 kb on - strand, within OKGIIK_03415at 762.599 kb on + strand, within OKGIIK_03415at 762.599 kb on + strand, within OKGIIK_03415at 762.599 kb on + strand, within OKGIIK_03415at 762.599 kb on + strand, within OKGIIK_03415at 762.599 kb on + strand, within OKGIIK_03415at 762.600 kb on - strand, within OKGIIK_03415at 762.600 kb on - strand, within OKGIIK_03415at 762.600 kb on - strand, within OKGIIK_03415at 762.600 kb on - strand, within OKGIIK_03415at 762.600 kb on - strand, within OKGIIK_03415at 762.600 kb on - strand, within OKGIIK_03415at 762.600 kb on - strand, within OKGIIK_03415at 762.600 kb on - strand, within OKGIIK_03415at 762.641 kb on + strand, within OKGIIK_03415at 762.641 kb on + strand, within OKGIIK_03415at 762.641 kb on + strand, within OKGIIK_03415at 762.641 kb on + strand, within OKGIIK_03415at 762.641 kb on + strand, within OKGIIK_03415at 762.642 kb on - strand, within OKGIIK_03415at 762.838 kb on + strand, within OKGIIK_03415at 762.838 kb on + strand, within OKGIIK_03415at 762.838 kb on + strand, within OKGIIK_03415at 762.838 kb on + strand, within OKGIIK_03415at 762.838 kb on + strand, within OKGIIK_03415at 762.838 kb on + strand, within OKGIIK_03415at 762.839 kb on - strand, within OKGIIK_03415at 762.839 kb on - strand, within OKGIIK_03415at 762.839 kb on - strand, within OKGIIK_03415at 762.839 kb on - strand, within OKGIIK_03415at 762.839 kb on - strand, within OKGIIK_03415at 762.839 kb on - strand, within OKGIIK_03415at 762.839 kb on - strand, within OKGIIK_03415at 762.839 kb on - strand, within OKGIIK_03415at 762.839 kb on - strand, within OKGIIK_03415at 762.839 kb on - strand, within OKGIIK_03415at 762.971 kb on + strand, within OKGIIK_03415at 762.971 kb on + strand, within OKGIIK_03415at 762.971 kb on + strand, within OKGIIK_03415at 762.972 kb on - strand, within OKGIIK_03415at 762.972 kb on - strand, within OKGIIK_03415at 762.972 kb on - strand, within OKGIIK_03415at 762.972 kb on - strand, within OKGIIK_03415at 762.972 kb on - strand, within OKGIIK_03415at 762.972 kb on - strand, within OKGIIK_03415at 762.972 kb on - strand, within OKGIIK_03415at 763.010 kb on + strand, within OKGIIK_03415at 763.010 kb on + strand, within OKGIIK_03415at 763.129 kb on - strand, within OKGIIK_03415at 763.134 kb on + strand, within OKGIIK_03415at 763.134 kb on + strand, within OKGIIK_03415at 763.134 kb on + strand, within OKGIIK_03415at 763.134 kb on + strand, within OKGIIK_03415at 763.134 kb on + strand, within OKGIIK_03415at 763.134 kb on + strand, within OKGIIK_03415at 763.134 kb on + strand, within OKGIIK_03415at 763.134 kb on + strand, within OKGIIK_03415at 763.134 kb on + strand, within OKGIIK_03415at 763.134 kb on + strand, within OKGIIK_03415at 763.134 kb on + strand, within OKGIIK_03415at 763.134 kb on + strand, within OKGIIK_03415at 763.134 kb on + strand, within OKGIIK_03415at 763.134 kb on + strand, within OKGIIK_03415at 763.134 kb on + strand, within OKGIIK_03415at 763.134 kb on + strand, within OKGIIK_03415at 763.134 kb on + strand, within OKGIIK_03415at 763.134 kb on + strand, within OKGIIK_03415at 763.134 kb on + strand, within OKGIIK_03415at 763.134 kb on + strand, within OKGIIK_03415at 763.134 kb on + strand, within OKGIIK_03415at 763.134 kb on + strand, within OKGIIK_03415at 763.134 kb on + strand, within OKGIIK_03415at 763.134 kb on + strand, within OKGIIK_03415at 763.134 kb on + strand, within OKGIIK_03415at 763.134 kb on + strand, within OKGIIK_03415at 763.134 kb on + strand, within OKGIIK_03415at 763.135 kb on - strand, within OKGIIK_03415at 763.135 kb on - strand, within OKGIIK_03415at 763.135 kb on - strand, within OKGIIK_03415at 763.135 kb on - strand, within OKGIIK_03415at 763.135 kb on - strand, within OKGIIK_03415at 763.135 kb on - strand, within OKGIIK_03415at 763.135 kb on - strand, within OKGIIK_03415at 763.135 kb on - strand, within OKGIIK_03415at 763.135 kb on - strand, within OKGIIK_03415at 763.135 kb on - strand, within OKGIIK_03415at 763.135 kb on - strand, within OKGIIK_03415at 763.135 kb on - strand, within OKGIIK_03415at 763.135 kb on - strand, within OKGIIK_03415at 763.135 kb on - strand, within OKGIIK_03415at 763.135 kb on - strand, within OKGIIK_03415at 763.135 kb on - strand, within OKGIIK_03415at 763.135 kb on - strand, within OKGIIK_03415at 763.135 kb on - strand, within OKGIIK_03415at 763.135 kb on - strand, within OKGIIK_03415at 763.135 kb on - strand, within OKGIIK_03415at 763.135 kb on - strand, within OKGIIK_03415at 763.135 kb on - strand, within OKGIIK_03415at 763.135 kb on - strand, within OKGIIK_03415at 763.136 kb on + strand, within OKGIIK_03415at 763.136 kb on + strand, within OKGIIK_03415at 763.136 kb on + strand, within OKGIIK_03415at 763.136 kb on + strand, within OKGIIK_03415at 763.136 kb on + strand, within OKGIIK_03415at 763.137 kb on - strand, within OKGIIK_03415at 763.137 kb on - strand, within OKGIIK_03415at 763.137 kb on - strand, within OKGIIK_03415at 763.426 kb on + strand, within OKGIIK_03420at 763.535 kb on + strandat 763.536 kb on - strandat 763.536 kb on - strandat 763.536 kb on - strandat 763.594 kb on + strandat 763.594 kb on + strandat 763.594 kb on + strandat 763.594 kb on + strandat 763.595 kb on - strandat 763.595 kb on - strandat 763.720 kb on + strand, within OKGIIK_03425at 763.726 kb on + strand, within OKGIIK_03425at 763.726 kb on + strand, within OKGIIK_03425at 763.726 kb on + strand, within OKGIIK_03425at 763.726 kb on + strand, within OKGIIK_03425at 763.727 kb on - strand, within OKGIIK_03425at 763.727 kb on - strand, within OKGIIK_03425at 763.727 kb on - strand, within OKGIIK_03425at 763.727 kb on - strand, within OKGIIK_03425at 763.768 kb on + strand, within OKGIIK_03425at 763.768 kb on + strand, within OKGIIK_03425at 763.768 kb on + strand, within OKGIIK_03425at 763.768 kb on + strand, within OKGIIK_03425at 763.768 kb on + strand, within OKGIIK_03425at 763.768 kb on + strand, within OKGIIK_03425at 763.768 kb on + strand, within OKGIIK_03425at 763.769 kb on - strand, within OKGIIK_03425at 763.769 kb on - strand, within OKGIIK_03425at 763.769 kb on - strand, within OKGIIK_03425at 763.769 kb on - strand, within OKGIIK_03425at 763.769 kb on - strand, within OKGIIK_03425at 763.769 kb on - strand, within OKGIIK_03425at 764.161 kb on + strand, within OKGIIK_03425at 764.162 kb on - strand, within OKGIIK_03425at 764.236 kb on + strand, within OKGIIK_03425at 764.236 kb on + strand, within OKGIIK_03425at 764.237 kb on - strand, within OKGIIK_03425at 764.237 kb on - strand, within OKGIIK_03425at 764.237 kb on - strand, within OKGIIK_03425at 764.237 kb on - strand, within OKGIIK_03425at 764.237 kb on - strand, within OKGIIK_03425at 764.237 kb on - strand, within OKGIIK_03425at 764.237 kb on - strand, within OKGIIK_03425at 764.237 kb on - strand, within OKGIIK_03425at 764.237 kb on - strand, within OKGIIK_03425at 764.408 kb on + strandat 764.408 kb on + strandat 764.408 kb on + strandat 764.408 kb on + strandat 764.408 kb on + strandat 764.408 kb on + strandat 764.409 kb on - strandat 764.670 kb on - strand, within OKGIIK_03430at 764.753 kb on + strand, within OKGIIK_03430at 764.754 kb on - strand, within OKGIIK_03430at 764.783 kb on + strand, within OKGIIK_03430at 764.783 kb on + strand, within OKGIIK_03430at 764.783 kb on + strand, within OKGIIK_03430at 764.783 kb on + strand, within OKGIIK_03430at 764.783 kb on + strand, within OKGIIK_03430at 764.783 kb on + strand, within OKGIIK_03430at 764.783 kb on + strand, within OKGIIK_03430at 764.783 kb on + strand, within OKGIIK_03430at 764.783 kb on + strand, within OKGIIK_03430at 764.783 kb on + strand, within OKGIIK_03430at 764.783 kb on + strand, within OKGIIK_03430at 764.783 kb on + strand, within OKGIIK_03430at 764.784 kb on - strand, within OKGIIK_03430at 764.784 kb on - strand, within OKGIIK_03430at 764.784 kb on - strand, within OKGIIK_03430at 764.784 kb on - strand, within OKGIIK_03430at 764.784 kb on - strand, within OKGIIK_03430at 764.784 kb on - strand, within OKGIIK_03430at 764.784 kb on - strand, within OKGIIK_03430at 764.784 kb on - strand, within OKGIIK_03430at 764.784 kb on - strand, within OKGIIK_03430at 764.784 kb on - strand, within OKGIIK_03430at 764.784 kb on - strand, within OKGIIK_03430at 764.784 kb on - strand, within OKGIIK_03430at 764.786 kb on + strand, within OKGIIK_03430at 764.786 kb on + strand, within OKGIIK_03430at 764.786 kb on + strand, within OKGIIK_03430at 764.786 kb on + strand, within OKGIIK_03430at 764.786 kb on + strand, within OKGIIK_03430at 764.786 kb on + strand, within OKGIIK_03430at 764.786 kb on + strand, within OKGIIK_03430at 764.786 kb on + strand, within OKGIIK_03430at 764.786 kb on + strand, within OKGIIK_03430at 764.787 kb on - strand, within OKGIIK_03430at 764.834 kb on + strand, within OKGIIK_03430at 764.928 kb on - strandat 764.928 kb on - strandat 764.928 kb on - strandat 764.928 kb on - strandat 765.008 kb on + strandat 765.008 kb on + strandat 765.008 kb on + strandat 765.008 kb on + strandat 765.009 kb on - strandat 765.009 kb on - strandat 765.009 kb on - strandat 765.009 kb on - strandat 765.009 kb on - strandat 765.009 kb on - strandat 765.009 kb on - strandat 765.165 kb on + strand, within OKGIIK_03435at 765.165 kb on + strand, within OKGIIK_03435at 765.166 kb on - strand, within OKGIIK_03435at 765.166 kb on - strand, within OKGIIK_03435at 765.363 kb on + strand, within OKGIIK_03435

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
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762,549 - OKGIIK_03415 0.26 +0.5
762,549 - OKGIIK_03415 0.26 +0.2
762,599 + OKGIIK_03415 0.31 +0.6
762,599 + OKGIIK_03415 0.31 -1.6
762,599 + OKGIIK_03415 0.31 -2.2
762,599 + OKGIIK_03415 0.31 -1.4
762,599 + OKGIIK_03415 0.31 -0.4
762,600 - OKGIIK_03415 0.31 +0.6
762,600 - OKGIIK_03415 0.31 +0.7
762,600 - OKGIIK_03415 0.31 -0.3
762,600 - OKGIIK_03415 0.31 -0.1
762,600 - OKGIIK_03415 0.31 -1.6
762,600 - OKGIIK_03415 0.31 -0.6
762,600 - OKGIIK_03415 0.31 -1.0
762,600 - OKGIIK_03415 0.31 -0.2
762,641 + OKGIIK_03415 0.35 -0.5
762,641 + OKGIIK_03415 0.35 -1.3
762,641 + OKGIIK_03415 0.35 -0.2
762,641 + OKGIIK_03415 0.35 +0.3
762,641 + OKGIIK_03415 0.35 +1.1
762,642 - OKGIIK_03415 0.35 -2.3
762,838 + OKGIIK_03415 0.54 -2.4
762,838 + OKGIIK_03415 0.54 -2.2
762,838 + OKGIIK_03415 0.54 +3.0
762,838 + OKGIIK_03415 0.54 -0.6
762,838 + OKGIIK_03415 0.54 -0.5
762,838 + OKGIIK_03415 0.54 -0.6
762,839 - OKGIIK_03415 0.54 -1.1
762,839 - OKGIIK_03415 0.54 +0.7
762,839 - OKGIIK_03415 0.54 -1.7
762,839 - OKGIIK_03415 0.54 +1.3
762,839 - OKGIIK_03415 0.54 -2.8
762,839 - OKGIIK_03415 0.54 -0.4
762,839 - OKGIIK_03415 0.54 -0.2
762,839 - OKGIIK_03415 0.54 -0.8
762,839 - OKGIIK_03415 0.54 -2.6
762,839 - OKGIIK_03415 0.54 +0.6
762,971 + OKGIIK_03415 0.67 -2.7
762,971 + OKGIIK_03415 0.67 +0.0
762,971 + OKGIIK_03415 0.67 -0.9
762,972 - OKGIIK_03415 0.68 +0.0
762,972 - OKGIIK_03415 0.68 -1.2
762,972 - OKGIIK_03415 0.68 -1.0
762,972 - OKGIIK_03415 0.68 -1.4
762,972 - OKGIIK_03415 0.68 -1.3
762,972 - OKGIIK_03415 0.68 -0.1
762,972 - OKGIIK_03415 0.68 -0.1
763,010 + OKGIIK_03415 0.71 -0.2
763,010 + OKGIIK_03415 0.71 -0.2
763,129 - OKGIIK_03415 0.83 +0.6
763,134 + OKGIIK_03415 0.84 +0.0
763,134 + OKGIIK_03415 0.84 -1.3
763,134 + OKGIIK_03415 0.84 -1.8
763,134 + OKGIIK_03415 0.84 -3.1
763,134 + OKGIIK_03415 0.84 -2.0
763,134 + OKGIIK_03415 0.84 -0.8
763,134 + OKGIIK_03415 0.84 +1.8
763,134 + OKGIIK_03415 0.84 +0.0
763,134 + OKGIIK_03415 0.84 -1.0
763,134 + OKGIIK_03415 0.84 -0.6
763,134 + OKGIIK_03415 0.84 +1.0
763,134 + OKGIIK_03415 0.84 -1.8
763,134 + OKGIIK_03415 0.84 +0.4
763,134 + OKGIIK_03415 0.84 -1.6
763,134 + OKGIIK_03415 0.84 -0.4
763,134 + OKGIIK_03415 0.84 +0.6
763,134 + OKGIIK_03415 0.84 +0.2
763,134 + OKGIIK_03415 0.84 -1.8
763,134 + OKGIIK_03415 0.84 -1.1
763,134 + OKGIIK_03415 0.84 -0.6
763,134 + OKGIIK_03415 0.84 -0.4
763,134 + OKGIIK_03415 0.84 -0.9
763,134 + OKGIIK_03415 0.84 +1.0
763,134 + OKGIIK_03415 0.84 -2.0
763,134 + OKGIIK_03415 0.84 -1.8
763,134 + OKGIIK_03415 0.84 -2.7
763,134 + OKGIIK_03415 0.84 -0.6
763,135 - OKGIIK_03415 0.84 -0.6
763,135 - OKGIIK_03415 0.84 +0.3
763,135 - OKGIIK_03415 0.84 +1.0
763,135 - OKGIIK_03415 0.84 +0.4
763,135 - OKGIIK_03415 0.84 -0.3
763,135 - OKGIIK_03415 0.84 -1.3
763,135 - OKGIIK_03415 0.84 +2.8
763,135 - OKGIIK_03415 0.84 +0.3
763,135 - OKGIIK_03415 0.84 +0.0
763,135 - OKGIIK_03415 0.84 -0.3
763,135 - OKGIIK_03415 0.84 -0.6
763,135 - OKGIIK_03415 0.84 +0.5
763,135 - OKGIIK_03415 0.84 -0.8
763,135 - OKGIIK_03415 0.84 +1.0
763,135 - OKGIIK_03415 0.84 +0.3
763,135 - OKGIIK_03415 0.84 +1.0
763,135 - OKGIIK_03415 0.84 -0.3
763,135 - OKGIIK_03415 0.84 -2.1
763,135 - OKGIIK_03415 0.84 -1.9
763,135 - OKGIIK_03415 0.84 -2.6
763,135 - OKGIIK_03415 0.84 -1.0
763,135 - OKGIIK_03415 0.84 -1.0
763,135 - OKGIIK_03415 0.84 -1.1
763,136 + OKGIIK_03415 0.84 +2.0
763,136 + OKGIIK_03415 0.84 -2.3
763,136 + OKGIIK_03415 0.84 +1.7
763,136 + OKGIIK_03415 0.84 +0.0
763,136 + OKGIIK_03415 0.84 +0.2
763,137 - OKGIIK_03415 0.84 -1.0
763,137 - OKGIIK_03415 0.84 -1.8
763,137 - OKGIIK_03415 0.84 +0.8
763,426 + OKGIIK_03420 0.77 -0.4
763,535 + -0.3
763,536 - -1.5
763,536 - +0.7
763,536 - -1.0
763,594 + -0.2
763,594 + -0.3
763,594 + -0.4
763,594 + +1.0
763,595 - -0.2
763,595 - +1.7
763,720 + OKGIIK_03425 0.21 +0.5
763,726 + OKGIIK_03425 0.22 -1.1
763,726 + OKGIIK_03425 0.22 -0.1
763,726 + OKGIIK_03425 0.22 +2.0
763,726 + OKGIIK_03425 0.22 -0.2
763,727 - OKGIIK_03425 0.22 -0.7
763,727 - OKGIIK_03425 0.22 +0.4
763,727 - OKGIIK_03425 0.22 +3.0
763,727 - OKGIIK_03425 0.22 +1.0
763,768 + OKGIIK_03425 0.27 -0.4
763,768 + OKGIIK_03425 0.27 -1.1
763,768 + OKGIIK_03425 0.27 +1.0
763,768 + OKGIIK_03425 0.27 -1.6
763,768 + OKGIIK_03425 0.27 +1.0
763,768 + OKGIIK_03425 0.27 +0.8
763,768 + OKGIIK_03425 0.27 -0.8
763,769 - OKGIIK_03425 0.27 +0.4
763,769 - OKGIIK_03425 0.27 +0.6
763,769 - OKGIIK_03425 0.27 -1.3
763,769 - OKGIIK_03425 0.27 -0.4
763,769 - OKGIIK_03425 0.27 +0.4
763,769 - OKGIIK_03425 0.27 -2.6
764,161 + OKGIIK_03425 0.74 +0.7
764,162 - OKGIIK_03425 0.74 +0.0
764,236 + OKGIIK_03425 0.83 -1.8
764,236 + OKGIIK_03425 0.83 +0.2
764,237 - OKGIIK_03425 0.83 -0.4
764,237 - OKGIIK_03425 0.83 -0.3
764,237 - OKGIIK_03425 0.83 -0.9
764,237 - OKGIIK_03425 0.83 +1.4
764,237 - OKGIIK_03425 0.83 -1.8
764,237 - OKGIIK_03425 0.83 +0.3
764,237 - OKGIIK_03425 0.83 +1.4
764,237 - OKGIIK_03425 0.83 -0.3
764,237 - OKGIIK_03425 0.83 -1.0
764,408 + +0.0
764,408 + +1.5
764,408 + +0.0
764,408 + -2.0
764,408 + +0.6
764,408 + +0.6
764,409 - +2.0
764,670 - OKGIIK_03430 0.47 -1.6
764,753 + OKGIIK_03430 0.62 +1.4
764,754 - OKGIIK_03430 0.63 -1.8
764,783 + OKGIIK_03430 0.68 -1.8
764,783 + OKGIIK_03430 0.68 +1.6
764,783 + OKGIIK_03430 0.68 -1.9
764,783 + OKGIIK_03430 0.68 +1.0
764,783 + OKGIIK_03430 0.68 -2.6
764,783 + OKGIIK_03430 0.68 +0.0
764,783 + OKGIIK_03430 0.68 -1.0
764,783 + OKGIIK_03430 0.68 -4.2
764,783 + OKGIIK_03430 0.68 -2.4
764,783 + OKGIIK_03430 0.68 -2.8
764,783 + OKGIIK_03430 0.68 -1.3
764,783 + OKGIIK_03430 0.68 -2.0
764,784 - OKGIIK_03430 0.68 -2.2
764,784 - OKGIIK_03430 0.68 -0.6
764,784 - OKGIIK_03430 0.68 +0.0
764,784 - OKGIIK_03430 0.68 -1.0
764,784 - OKGIIK_03430 0.68 +0.4
764,784 - OKGIIK_03430 0.68 -1.0
764,784 - OKGIIK_03430 0.68 -1.6
764,784 - OKGIIK_03430 0.68 -3.7
764,784 - OKGIIK_03430 0.68 -2.8
764,784 - OKGIIK_03430 0.68 -1.6
764,784 - OKGIIK_03430 0.68 -3.2
764,784 - OKGIIK_03430 0.68 -1.8
764,786 + OKGIIK_03430 0.68 -1.8
764,786 + OKGIIK_03430 0.68 -2.6
764,786 + OKGIIK_03430 0.68 -2.3
764,786 + OKGIIK_03430 0.68 -1.8
764,786 + OKGIIK_03430 0.68 -3.4
764,786 + OKGIIK_03430 0.68 -3.2
764,786 + OKGIIK_03430 0.68 -0.2
764,786 + OKGIIK_03430 0.68 -5.7
764,786 + OKGIIK_03430 0.68 +1.0
764,787 - OKGIIK_03430 0.68 -1.6
764,834 + OKGIIK_03430 0.77 -2.6
764,928 - -2.2
764,928 - -3.2
764,928 - -2.7
764,928 - +1.0
765,008 + +0.6
765,008 + -1.6
765,008 + -0.6
765,008 + -0.6
765,009 - +0.6
765,009 - -0.8
765,009 - -2.0
765,009 - -1.7
765,009 - -1.2
765,009 - +0.0
765,009 - -1.6
765,165 + OKGIIK_03435 0.22 +0.4
765,165 + OKGIIK_03435 0.22 -0.7
765,166 - OKGIIK_03435 0.22 -0.6
765,166 - OKGIIK_03435 0.22 +1.0
765,363 + OKGIIK_03435 0.59 -1.9

Or see this region's nucleotide sequence