Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_02860 and OKGIIK_02865 overlap by 11 nucleotides OKGIIK_02865 and OKGIIK_02870 are separated by 31 nucleotides OKGIIK_02870 and OKGIIK_02875 overlap by 4 nucleotides OKGIIK_02875 and OKGIIK_02880 are separated by 160 nucleotides OKGIIK_02880 and ompR are separated by 13 nucleotides ompR and OKGIIK_02890 are separated by 17 nucleotides
OKGIIK_02860: OKGIIK_02860 - Chemotaxis protein CheW, at 658,162 to 658,641
_02860
OKGIIK_02865: OKGIIK_02865 - DUF2802 domain-containing protein, at 658,631 to 658,984
_02865
OKGIIK_02870: OKGIIK_02870 - Flagellar biosynthesis protein, at 659,016 to 659,267
_02870
OKGIIK_02875: OKGIIK_02875 - Flg-hook domain-containing protein, at 659,264 to 660,406
_02875
OKGIIK_02880: OKGIIK_02880 - STAS domain-containing protein, at 660,567 to 660,926
_02880
OKGIIK_02885: ompR - response regulator, at 660,940 to 661,302
ompR
OKGIIK_02890: OKGIIK_02890 - Histidine kinase, at 661,320 to 663,293
_02890
Position (kb) 659
660
661 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 658.454 kb on + strand, within OKGIIK_02860 at 658.656 kb on + strand at 658.656 kb on + strand at 658.656 kb on + strand at 658.656 kb on + strand at 658.656 kb on + strand at 658.656 kb on + strand at 658.656 kb on + strand at 658.656 kb on + strand at 658.657 kb on - strand at 658.657 kb on - strand at 658.657 kb on - strand at 658.657 kb on - strand at 658.657 kb on - strand at 658.657 kb on - strand at 658.657 kb on - strand at 658.657 kb on - strand at 658.657 kb on - strand at 658.657 kb on - strand at 658.657 kb on - strand at 658.657 kb on - strand at 659.018 kb on - strand at 659.035 kb on + strand at 659.035 kb on - strand at 659.036 kb on - strand at 659.036 kb on - strand at 659.036 kb on - strand at 659.068 kb on + strand, within OKGIIK_02870 at 659.068 kb on + strand, within OKGIIK_02870 at 659.068 kb on + strand, within OKGIIK_02870 at 659.069 kb on - strand, within OKGIIK_02870 at 659.069 kb on - strand, within OKGIIK_02870 at 659.069 kb on - strand, within OKGIIK_02870 at 659.069 kb on - strand, within OKGIIK_02870 at 659.069 kb on - strand, within OKGIIK_02870 at 659.602 kb on - strand, within OKGIIK_02875 at 659.777 kb on + strand, within OKGIIK_02875 at 660.096 kb on + strand, within OKGIIK_02875 at 660.236 kb on + strand, within OKGIIK_02875 at 660.236 kb on + strand, within OKGIIK_02875 at 660.236 kb on + strand, within OKGIIK_02875 at 660.236 kb on + strand, within OKGIIK_02875 at 660.236 kb on + strand, within OKGIIK_02875 at 660.236 kb on + strand, within OKGIIK_02875 at 660.236 kb on + strand, within OKGIIK_02875 at 660.237 kb on - strand, within OKGIIK_02875 at 660.237 kb on - strand, within OKGIIK_02875 at 660.237 kb on - strand, within OKGIIK_02875 at 660.237 kb on - strand, within OKGIIK_02875 at 660.237 kb on - strand, within OKGIIK_02875 at 660.501 kb on + strand at 660.525 kb on + strand at 660.594 kb on - strand at 660.594 kb on - strand at 661.109 kb on + strand, within ompR at 661.110 kb on - strand, within ompR at 661.110 kb on - strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Metal_ion_mix_sitestressplate 2 x remove 658,454 + OKGIIK_02860 0.61 -0.1 658,656 + -1.3 658,656 + -1.0 658,656 + -1.0 658,656 + -2.5 658,656 + -1.3 658,656 + -0.3 658,656 + -2.2 658,656 + -1.3 658,657 - -0.1 658,657 - -1.8 658,657 - -2.3 658,657 - -1.8 658,657 - -1.8 658,657 - -0.8 658,657 - -0.9 658,657 - -0.6 658,657 - -0.7 658,657 - +1.0 658,657 - -0.8 658,657 - -1.6 659,018 - -1.6 659,035 + -1.1 659,035 - +0.7 659,036 - +0.3 659,036 - -1.9 659,036 - -1.3 659,068 + OKGIIK_02870 0.21 -1.6 659,068 + OKGIIK_02870 0.21 -0.7 659,068 + OKGIIK_02870 0.21 -0.0 659,069 - OKGIIK_02870 0.21 -2.2 659,069 - OKGIIK_02870 0.21 -0.6 659,069 - OKGIIK_02870 0.21 -0.3 659,069 - OKGIIK_02870 0.21 +2.0 659,069 - OKGIIK_02870 0.21 -2.4 659,602 - OKGIIK_02875 0.30 -3.6 659,777 + OKGIIK_02875 0.45 -1.0 660,096 + OKGIIK_02875 0.73 -0.0 660,236 + OKGIIK_02875 0.85 +0.3 660,236 + OKGIIK_02875 0.85 -0.6 660,236 + OKGIIK_02875 0.85 -1.6 660,236 + OKGIIK_02875 0.85 -3.1 660,236 + OKGIIK_02875 0.85 -0.3 660,236 + OKGIIK_02875 0.85 -2.3 660,236 + OKGIIK_02875 0.85 +0.6 660,237 - OKGIIK_02875 0.85 -1.4 660,237 - OKGIIK_02875 0.85 -1.0 660,237 - OKGIIK_02875 0.85 -0.5 660,237 - OKGIIK_02875 0.85 -1.8 660,237 - OKGIIK_02875 0.85 -2.7 660,501 + -2.2 660,525 + +1.6 660,594 - -1.6 660,594 - +0.2 661,109 + ompR OKGIIK_02885 0.47 +1.0 661,110 - ompR OKGIIK_02885 0.47 -1.1 661,110 - ompR OKGIIK_02885 0.47 -3.1 661,156 + ompR OKGIIK_02885 0.60 -0.0 661,156 + ompR OKGIIK_02885 0.60 -0.6 661,156 + ompR OKGIIK_02885 0.60 -1.2 661,156 + ompR OKGIIK_02885 0.60 +0.4 661,156 + ompR OKGIIK_02885 0.60 -0.0 661,156 + ompR OKGIIK_02885 0.60 +1.2 661,156 + ompR OKGIIK_02885 0.60 -0.0 661,156 + ompR OKGIIK_02885 0.60 -0.6 661,156 + ompR OKGIIK_02885 0.60 -0.6 661,156 + ompR OKGIIK_02885 0.60 -0.8 661,156 + ompR OKGIIK_02885 0.60 -1.9 661,156 + ompR OKGIIK_02885 0.60 -1.6 661,156 + ompR OKGIIK_02885 0.60 +1.0 661,156 + ompR OKGIIK_02885 0.60 -1.6 661,156 + ompR OKGIIK_02885 0.60 -1.8 661,156 + ompR OKGIIK_02885 0.60 -2.0 661,156 + ompR OKGIIK_02885 0.60 +3.0 661,156 + ompR OKGIIK_02885 0.60 -1.8 661,156 + ompR OKGIIK_02885 0.60 -1.2 661,156 + ompR OKGIIK_02885 0.60 -2.1 661,156 + ompR OKGIIK_02885 0.60 -0.1 661,156 + ompR OKGIIK_02885 0.60 -1.9 661,156 + ompR OKGIIK_02885 0.60 -0.6 661,156 + ompR OKGIIK_02885 0.60 -0.7 661,156 + ompR OKGIIK_02885 0.60 -1.8 661,156 + ompR OKGIIK_02885 0.60 -2.8 661,156 + ompR OKGIIK_02885 0.60 +2.3 661,156 + ompR OKGIIK_02885 0.60 -2.3 661,156 + ompR OKGIIK_02885 0.60 -1.6 661,156 + ompR OKGIIK_02885 0.60 -1.3 661,156 + ompR OKGIIK_02885 0.60 -0.6 661,157 - ompR OKGIIK_02885 0.60 -1.7 661,157 - ompR OKGIIK_02885 0.60 -2.3 661,157 - ompR OKGIIK_02885 0.60 -0.8 661,157 - ompR OKGIIK_02885 0.60 -3.1 661,157 - ompR OKGIIK_02885 0.60 +1.0 661,157 - ompR OKGIIK_02885 0.60 -0.9 661,157 - ompR OKGIIK_02885 0.60 -1.6 661,157 - ompR OKGIIK_02885 0.60 -0.3 661,157 - ompR OKGIIK_02885 0.60 -1.3 661,157 - ompR OKGIIK_02885 0.60 -0.6 661,157 - ompR OKGIIK_02885 0.60 -1.1 661,157 - ompR OKGIIK_02885 0.60 +2.0 661,157 - ompR OKGIIK_02885 0.60 -0.7 661,157 - ompR OKGIIK_02885 0.60 -0.6 661,157 - ompR OKGIIK_02885 0.60 -2.5 661,157 - ompR OKGIIK_02885 0.60 -2.7 661,157 - ompR OKGIIK_02885 0.60 -1.0 661,157 - ompR OKGIIK_02885 0.60 +0.1 661,157 - ompR OKGIIK_02885 0.60 -1.0 661,157 - ompR OKGIIK_02885 0.60 -0.6 661,157 - ompR OKGIIK_02885 0.60 +0.1 661,157 - ompR OKGIIK_02885 0.60 -0.8 661,157 - ompR OKGIIK_02885 0.60 -1.2 661,157 - ompR OKGIIK_02885 0.60 -1.0 661,157 - ompR OKGIIK_02885 0.60 -0.0 661,157 - ompR OKGIIK_02885 0.60 -2.2 661,157 - ompR OKGIIK_02885 0.60 -1.3 661,157 - ompR OKGIIK_02885 0.60 +1.6 661,157 - ompR OKGIIK_02885 0.60 -0.0 661,157 - ompR OKGIIK_02885 0.60 +1.6 661,157 - ompR OKGIIK_02885 0.60 -0.9 661,157 - ompR OKGIIK_02885 0.60 -1.3
Or see this region's nucleotide sequence