Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_00980 and OKGIIK_00985 are separated by 81 nucleotides OKGIIK_00985 and OKGIIK_00990 are separated by 61 nucleotides OKGIIK_00990 and OKGIIK_00995 are separated by 66 nucleotides OKGIIK_00995 and OKGIIK_01000 overlap by 17 nucleotides OKGIIK_01000 and OKGIIK_01005 overlap by 4 nucleotides
OKGIIK_00980: OKGIIK_00980 - Multidrug transporter AcrB, at 212,051 to 215,314
_00980
OKGIIK_00985: OKGIIK_00985 - DnrO protein, at 215,396 to 215,893
_00985
OKGIIK_00990: OKGIIK_00990 - TonB-dependent copper receptor, at 215,955 to 218,099
_00990
OKGIIK_00995: OKGIIK_00995 - DUF2946 domain-containing protein, at 218,166 to 218,573
_00995
OKGIIK_01000: OKGIIK_01000 - hypothetical protein, at 218,557 to 218,829
_01000
OKGIIK_01005: OKGIIK_01005 - Prephenate dehydrogenase, at 218,826 to 219,590
_01005
Position (kb) 215
216
217
218
219 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 215.237 kb on + strand at 215.237 kb on + strand at 215.237 kb on + strand at 215.237 kb on + strand at 215.237 kb on + strand at 215.237 kb on + strand at 215.237 kb on + strand at 215.237 kb on + strand at 215.237 kb on + strand at 215.237 kb on + strand at 215.237 kb on + strand at 215.237 kb on + strand at 215.238 kb on - strand at 215.238 kb on - strand at 215.238 kb on - strand at 215.238 kb on - strand at 215.238 kb on - strand at 215.238 kb on - strand at 215.238 kb on - strand at 215.238 kb on - strand at 215.238 kb on - strand at 215.238 kb on - strand at 215.238 kb on - strand at 215.238 kb on - strand at 215.240 kb on + strand at 215.240 kb on + strand at 215.240 kb on + strand at 215.240 kb on + strand at 215.240 kb on + strand at 215.240 kb on + strand at 215.240 kb on + strand at 215.240 kb on + strand at 215.240 kb on + strand at 215.240 kb on + strand at 215.240 kb on + strand at 215.241 kb on - strand at 215.241 kb on - strand at 215.241 kb on - strand at 215.241 kb on - strand at 215.241 kb on - strand at 215.241 kb on - strand at 215.388 kb on + strand at 215.388 kb on + strand at 215.388 kb on + strand at 215.388 kb on + strand at 215.389 kb on - strand at 215.389 kb on - strand at 215.389 kb on - strand at 215.389 kb on - strand at 215.389 kb on - strand at 215.415 kb on + strand at 215.415 kb on + strand at 215.415 kb on + strand at 215.415 kb on + strand at 215.415 kb on + strand at 215.415 kb on + strand at 215.415 kb on + strand at 215.415 kb on + strand at 215.415 kb on + strand at 215.415 kb on + strand at 215.415 kb on + strand at 215.416 kb on - strand at 215.416 kb on - strand at 215.416 kb on - strand at 215.416 kb on - strand at 215.416 kb on - strand at 215.416 kb on - strand at 215.603 kb on + strand, within OKGIIK_00985 at 215.604 kb on - strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.672 kb on + strand, within OKGIIK_00985 at 215.673 kb on - strand, within OKGIIK_00985 at 215.673 kb on - strand, within OKGIIK_00985 at 215.673 kb on - strand, within OKGIIK_00985 at 215.673 kb on - strand, within OKGIIK_00985 at 215.673 kb on - strand, within OKGIIK_00985 at 215.673 kb on - strand, within OKGIIK_00985 at 215.673 kb on - strand, within OKGIIK_00985 at 215.673 kb on - strand, within OKGIIK_00985 at 215.673 kb on - strand, within OKGIIK_00985 at 215.673 kb on - strand, within OKGIIK_00985 at 215.673 kb on - strand, within OKGIIK_00985 at 215.673 kb on - strand, within OKGIIK_00985 at 215.673 kb on - strand, within OKGIIK_00985 at 215.673 kb on - strand, within OKGIIK_00985 at 215.673 kb on - strand, within OKGIIK_00985 at 215.673 kb on - strand, within OKGIIK_00985 at 215.673 kb on - strand, within OKGIIK_00985 at 215.673 kb on - strand, within OKGIIK_00985 at 215.673 kb on - strand, within OKGIIK_00985 at 215.673 kb on - strand, within OKGIIK_00985 at 215.673 kb on - strand, within OKGIIK_00985 at 215.673 kb on - strand, within OKGIIK_00985 at 215.673 kb on - strand, within OKGIIK_00985 at 215.673 kb on - strand, within OKGIIK_00985 at 215.673 kb on - strand, within OKGIIK_00985 at 215.673 kb on - strand, within OKGIIK_00985 at 215.673 kb on - strand, within OKGIIK_00985 at 215.673 kb on - strand, within OKGIIK_00985 at 215.673 kb on - strand, within OKGIIK_00985 at 215.673 kb on - strand, within OKGIIK_00985 at 215.673 kb on - strand, within OKGIIK_00985 at 215.673 kb on - strand, within OKGIIK_00985 at 215.673 kb on - strand, within OKGIIK_00985 at 215.673 kb on - strand, within OKGIIK_00985 at 215.797 kb on + strand, within OKGIIK_00985 at 215.798 kb on - strand, within OKGIIK_00985 at 215.798 kb on - strand, within OKGIIK_00985 at 215.820 kb on - strand, within OKGIIK_00985 at 215.820 kb on - strand, within OKGIIK_00985 at 215.828 kb on + strand, within OKGIIK_00985 at 215.828 kb on + strand, within OKGIIK_00985 at 215.828 kb on + strand, within OKGIIK_00985 at 215.828 kb on + strand, within OKGIIK_00985 at 215.828 kb on + strand, within OKGIIK_00985 at 215.829 kb on - strand, within OKGIIK_00985 at 215.829 kb on - strand, within OKGIIK_00985 at 215.829 kb on - strand, within OKGIIK_00985 at 215.829 kb on - strand, within OKGIIK_00985 at 215.829 kb on - strand, within OKGIIK_00985 at 215.829 kb on - strand, within OKGIIK_00985 at 215.829 kb on - strand, within OKGIIK_00985 at 215.829 kb on - strand, within OKGIIK_00985 at 217.144 kb on + strand, within OKGIIK_00990 at 217.144 kb on + strand, within OKGIIK_00990 at 217.144 kb on + strand, within OKGIIK_00990 at 217.145 kb on - strand, within OKGIIK_00990 at 217.145 kb on - strand, within OKGIIK_00990 at 217.286 kb on - strand, within OKGIIK_00990 at 217.384 kb on + strand, within OKGIIK_00990 at 217.385 kb on - strand, within OKGIIK_00990 at 217.554 kb on - strand, within OKGIIK_00990 at 217.651 kb on + strand, within OKGIIK_00990 at 218.216 kb on - strand, within OKGIIK_00995 at 218.216 kb on - strand, within OKGIIK_00995 at 218.216 kb on - strand, within OKGIIK_00995 at 218.216 kb on - strand, within OKGIIK_00995 at 218.216 kb on - strand, within OKGIIK_00995 at 218.216 kb on - strand, within OKGIIK_00995 at 218.275 kb on - strand, within OKGIIK_00995 at 218.335 kb on + strand, within OKGIIK_00995 at 218.336 kb on - strand, within OKGIIK_00995 at 218.336 kb on - strand, within OKGIIK_00995 at 218.788 kb on + strand, within OKGIIK_01000
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Metal_ion_mix_sitestressplate 2 x remove 215,237 + -2.8 215,237 + -1.1 215,237 + -2.0 215,237 + -2.2 215,237 + -1.5 215,237 + +1.0 215,237 + +1.0 215,237 + -1.4 215,237 + -1.0 215,237 + -2.3 215,237 + +1.0 215,237 + +0.5 215,238 - -1.1 215,238 - -1.3 215,238 - -1.3 215,238 - -0.5 215,238 - -1.0 215,238 - -1.1 215,238 - -1.4 215,238 - -0.2 215,238 - +0.2 215,238 - -1.5 215,238 - +0.5 215,238 - -1.3 215,240 + -0.5 215,240 + -1.5 215,240 + +1.5 215,240 + -0.5 215,240 + -0.5 215,240 + -1.5 215,240 + +0.3 215,240 + -2.2 215,240 + -0.0 215,240 + -0.1 215,240 + +0.8 215,241 - -1.3 215,241 - +1.0 215,241 - +0.5 215,241 - -1.3 215,241 - -1.3 215,241 - +0.2 215,388 + -2.4 215,388 + -1.4 215,388 + -0.3 215,388 + -1.0 215,389 - +2.6 215,389 - +1.5 215,389 - -0.5 215,389 - +0.9 215,389 - +0.4 215,415 + +0.2 215,415 + +1.9 215,415 + -1.3 215,415 + -2.3 215,415 + -1.4 215,415 + -1.3 215,415 + -0.8 215,415 + +1.4 215,415 + -1.8 215,415 + -2.4 215,415 + -2.0 215,416 - +1.5 215,416 - -0.8 215,416 - -0.9 215,416 - -0.7 215,416 - -1.3 215,416 - -0.3 215,603 + OKGIIK_00985 0.42 -0.2 215,604 - OKGIIK_00985 0.42 +0.4 215,672 + OKGIIK_00985 0.55 -1.0 215,672 + OKGIIK_00985 0.55 -1.0 215,672 + OKGIIK_00985 0.55 +0.1 215,672 + OKGIIK_00985 0.55 -1.0 215,672 + OKGIIK_00985 0.55 -2.7 215,672 + OKGIIK_00985 0.55 -0.3 215,672 + OKGIIK_00985 0.55 +0.3 215,672 + OKGIIK_00985 0.55 +1.8 215,672 + OKGIIK_00985 0.55 +2.0 215,672 + OKGIIK_00985 0.55 -0.8 215,672 + OKGIIK_00985 0.55 -1.0 215,672 + OKGIIK_00985 0.55 -1.0 215,672 + OKGIIK_00985 0.55 -1.1 215,672 + OKGIIK_00985 0.55 -1.8 215,672 + OKGIIK_00985 0.55 -0.5 215,672 + OKGIIK_00985 0.55 -1.5 215,672 + OKGIIK_00985 0.55 -0.5 215,672 + OKGIIK_00985 0.55 +0.4 215,672 + OKGIIK_00985 0.55 -1.8 215,672 + OKGIIK_00985 0.55 -1.0 215,672 + OKGIIK_00985 0.55 -0.5 215,672 + OKGIIK_00985 0.55 -0.4 215,672 + OKGIIK_00985 0.55 +0.0 215,672 + OKGIIK_00985 0.55 +1.0 215,672 + OKGIIK_00985 0.55 +0.4 215,672 + OKGIIK_00985 0.55 -0.7 215,672 + OKGIIK_00985 0.55 -2.9 215,672 + OKGIIK_00985 0.55 +0.8 215,672 + OKGIIK_00985 0.55 -1.8 215,672 + OKGIIK_00985 0.55 +0.0 215,672 + OKGIIK_00985 0.55 -1.2 215,672 + OKGIIK_00985 0.55 -0.7 215,672 + OKGIIK_00985 0.55 -1.3 215,672 + OKGIIK_00985 0.55 +1.0 215,672 + OKGIIK_00985 0.55 +1.8 215,672 + OKGIIK_00985 0.55 +0.2 215,672 + OKGIIK_00985 0.55 +0.6 215,672 + OKGIIK_00985 0.55 -0.2 215,672 + OKGIIK_00985 0.55 -1.7 215,672 + OKGIIK_00985 0.55 -2.8 215,672 + OKGIIK_00985 0.55 -1.5 215,672 + OKGIIK_00985 0.55 +0.2 215,672 + OKGIIK_00985 0.55 -1.5 215,672 + OKGIIK_00985 0.55 -1.3 215,672 + OKGIIK_00985 0.55 -1.8 215,672 + OKGIIK_00985 0.55 +0.2 215,672 + OKGIIK_00985 0.55 -0.4 215,672 + OKGIIK_00985 0.55 -1.0 215,672 + OKGIIK_00985 0.55 -0.7 215,672 + OKGIIK_00985 0.55 -3.9 215,672 + OKGIIK_00985 0.55 -0.8 215,672 + OKGIIK_00985 0.55 -0.8 215,672 + OKGIIK_00985 0.55 -2.7 215,672 + OKGIIK_00985 0.55 +0.4 215,672 + OKGIIK_00985 0.55 +2.0 215,672 + OKGIIK_00985 0.55 -2.1 215,672 + OKGIIK_00985 0.55 -2.4 215,672 + OKGIIK_00985 0.55 -0.3 215,672 + OKGIIK_00985 0.55 -0.6 215,672 + OKGIIK_00985 0.55 +1.6 215,672 + OKGIIK_00985 0.55 +0.2 215,672 + OKGIIK_00985 0.55 -1.1 215,673 - OKGIIK_00985 0.56 -1.8 215,673 - OKGIIK_00985 0.56 -2.4 215,673 - OKGIIK_00985 0.56 +1.4 215,673 - OKGIIK_00985 0.56 -0.5 215,673 - OKGIIK_00985 0.56 -1.3 215,673 - OKGIIK_00985 0.56 -1.1 215,673 - OKGIIK_00985 0.56 -1.5 215,673 - OKGIIK_00985 0.56 +0.0 215,673 - OKGIIK_00985 0.56 +0.6 215,673 - OKGIIK_00985 0.56 +0.3 215,673 - OKGIIK_00985 0.56 +0.5 215,673 - OKGIIK_00985 0.56 -0.2 215,673 - OKGIIK_00985 0.56 +1.0 215,673 - OKGIIK_00985 0.56 -0.5 215,673 - OKGIIK_00985 0.56 -1.0 215,673 - OKGIIK_00985 0.56 +1.0 215,673 - OKGIIK_00985 0.56 -1.3 215,673 - OKGIIK_00985 0.56 +0.2 215,673 - OKGIIK_00985 0.56 -1.0 215,673 - OKGIIK_00985 0.56 -1.2 215,673 - OKGIIK_00985 0.56 +0.0 215,673 - OKGIIK_00985 0.56 +0.7 215,673 - OKGIIK_00985 0.56 +2.4 215,673 - OKGIIK_00985 0.56 +0.7 215,673 - OKGIIK_00985 0.56 -2.7 215,673 - OKGIIK_00985 0.56 -1.8 215,673 - OKGIIK_00985 0.56 -2.1 215,673 - OKGIIK_00985 0.56 -4.7 215,673 - OKGIIK_00985 0.56 +0.0 215,673 - OKGIIK_00985 0.56 +2.0 215,673 - OKGIIK_00985 0.56 +0.3 215,673 - OKGIIK_00985 0.56 -2.3 215,673 - OKGIIK_00985 0.56 -0.8 215,673 - OKGIIK_00985 0.56 +1.4 215,797 + OKGIIK_00985 0.81 +0.4 215,798 - OKGIIK_00985 0.81 -1.3 215,798 - OKGIIK_00985 0.81 +0.0 215,820 - OKGIIK_00985 0.85 -1.8 215,820 - OKGIIK_00985 0.85 -0.5 215,828 + OKGIIK_00985 0.87 -1.7 215,828 + OKGIIK_00985 0.87 -0.4 215,828 + OKGIIK_00985 0.87 -0.1 215,828 + OKGIIK_00985 0.87 +1.6 215,828 + OKGIIK_00985 0.87 -0.3 215,829 - OKGIIK_00985 0.87 -1.5 215,829 - OKGIIK_00985 0.87 -1.4 215,829 - OKGIIK_00985 0.87 -0.3 215,829 - OKGIIK_00985 0.87 -1.4 215,829 - OKGIIK_00985 0.87 +0.0 215,829 - OKGIIK_00985 0.87 +0.4 215,829 - OKGIIK_00985 0.87 -1.3 215,829 - OKGIIK_00985 0.87 -1.5 217,144 + OKGIIK_00990 0.55 +3.4 217,144 + OKGIIK_00990 0.55 -3.5 217,144 + OKGIIK_00990 0.55 +0.0 217,145 - OKGIIK_00990 0.55 -1.5 217,145 - OKGIIK_00990 0.55 -2.8 217,286 - OKGIIK_00990 0.62 +0.0 217,384 + OKGIIK_00990 0.67 -0.5 217,385 - OKGIIK_00990 0.67 -1.0 217,554 - OKGIIK_00990 0.75 +0.0 217,651 + OKGIIK_00990 0.79 -2.9 218,216 - OKGIIK_00995 0.12 -0.2 218,216 - OKGIIK_00995 0.12 -1.3 218,216 - OKGIIK_00995 0.12 -1.8 218,216 - OKGIIK_00995 0.12 -1.8 218,216 - OKGIIK_00995 0.12 -1.0 218,216 - OKGIIK_00995 0.12 -2.2 218,275 - OKGIIK_00995 0.27 -1.5 218,335 + OKGIIK_00995 0.41 +0.0 218,336 - OKGIIK_00995 0.42 -1.1 218,336 - OKGIIK_00995 0.42 -1.4 218,788 + OKGIIK_01000 0.85 -2.9
Or see this region's nucleotide sequence