Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_00255 and OKGIIK_00260 are separated by 54 nucleotides OKGIIK_00260 and OKGIIK_00265 are separated by 46 nucleotides OKGIIK_00265 and OKGIIK_00270 are separated by 223 nucleotides OKGIIK_00270 and OKGIIK_00275 are separated by 656 nucleotides
OKGIIK_00255: OKGIIK_00255 - Transglut-core3 domain-containing protein, at 64,880 to 65,557
_00255
OKGIIK_00260: OKGIIK_00260 - hypothetical protein, at 65,612 to 65,761
_00260
OKGIIK_00265: OKGIIK_00265 - Lasso peptide StcA, at 65,808 to 65,948
_00265
OKGIIK_00270: OKGIIK_00270 - Transcriptional regulator, at 66,172 to 66,801
_00270
OKGIIK_00275: OKGIIK_00275 - Antitoxin, at 67,458 to 67,814
_00275
Position (kb) 66
67 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 65.261 kb on + strand, within OKGIIK_00255 at 65.262 kb on - strand, within OKGIIK_00255 at 65.262 kb on - strand, within OKGIIK_00255 at 65.372 kb on + strand, within OKGIIK_00255 at 65.372 kb on + strand, within OKGIIK_00255 at 65.373 kb on - strand, within OKGIIK_00255 at 65.373 kb on - strand, within OKGIIK_00255 at 65.373 kb on - strand, within OKGIIK_00255 at 65.373 kb on - strand, within OKGIIK_00255 at 65.373 kb on - strand, within OKGIIK_00255 at 65.373 kb on - strand, within OKGIIK_00255 at 65.396 kb on + strand, within OKGIIK_00255 at 65.397 kb on - strand, within OKGIIK_00255 at 65.430 kb on + strand, within OKGIIK_00255 at 65.430 kb on + strand, within OKGIIK_00255 at 65.431 kb on - strand, within OKGIIK_00255 at 65.431 kb on - strand, within OKGIIK_00255 at 65.431 kb on - strand, within OKGIIK_00255 at 65.431 kb on - strand, within OKGIIK_00255 at 65.473 kb on - strand, within OKGIIK_00255 at 65.473 kb on - strand, within OKGIIK_00255 at 65.547 kb on + strand at 65.548 kb on - strand at 65.548 kb on - strand at 65.548 kb on - strand at 65.613 kb on + strand at 65.613 kb on + strand at 65.732 kb on - strand, within OKGIIK_00260 at 65.822 kb on + strand, within OKGIIK_00265 at 65.822 kb on + strand, within OKGIIK_00265 at 65.997 kb on + strand at 65.997 kb on + strand at 65.997 kb on + strand at 65.997 kb on + strand at 65.998 kb on - strand at 65.998 kb on - strand at 65.998 kb on - strand at 65.998 kb on - strand at 65.998 kb on - strand at 66.028 kb on + strand at 66.028 kb on + strand at 66.028 kb on + strand at 66.029 kb on - strand at 66.029 kb on - strand at 66.029 kb on - strand at 66.051 kb on - strand at 66.051 kb on - strand at 66.077 kb on + strand at 66.077 kb on + strand at 66.077 kb on + strand at 66.078 kb on - strand at 66.078 kb on - strand at 66.078 kb on - strand at 66.129 kb on + strand at 66.129 kb on + strand at 66.129 kb on + strand at 66.129 kb on + strand at 66.129 kb on + strand at 66.129 kb on + strand at 66.129 kb on + strand at 66.130 kb on - strand at 66.160 kb on + strand at 66.161 kb on - strand at 66.161 kb on - strand at 66.173 kb on + strand at 66.173 kb on + strand at 66.173 kb on + strand at 66.182 kb on + strand at 66.182 kb on + strand at 66.182 kb on + strand at 66.182 kb on + strand at 66.182 kb on + strand at 66.182 kb on + strand at 66.183 kb on - strand at 66.245 kb on + strand, within OKGIIK_00270 at 66.245 kb on + strand, within OKGIIK_00270 at 66.246 kb on - strand, within OKGIIK_00270 at 66.246 kb on - strand, within OKGIIK_00270 at 66.356 kb on - strand, within OKGIIK_00270 at 66.560 kb on + strand, within OKGIIK_00270 at 66.560 kb on + strand, within OKGIIK_00270 at 66.560 kb on + strand, within OKGIIK_00270 at 66.560 kb on + strand, within OKGIIK_00270 at 66.561 kb on - strand, within OKGIIK_00270 at 66.561 kb on - strand, within OKGIIK_00270 at 66.561 kb on - strand, within OKGIIK_00270 at 66.651 kb on - strand, within OKGIIK_00270 at 66.672 kb on + strand, within OKGIIK_00270 at 66.673 kb on - strand, within OKGIIK_00270 at 66.673 kb on - strand, within OKGIIK_00270 at 66.732 kb on - strand, within OKGIIK_00270 at 66.801 kb on + strand at 66.801 kb on + strand at 66.801 kb on + strand at 66.801 kb on + strand at 66.802 kb on - strand at 66.802 kb on - strand at 66.802 kb on - strand at 66.802 kb on - strand at 66.867 kb on + strand at 66.867 kb on + strand at 66.867 kb on + strand at 66.867 kb on + strand at 66.868 kb on - strand at 66.868 kb on - strand at 66.868 kb on - strand at 66.868 kb on - strand at 66.868 kb on - strand at 66.868 kb on - strand at 66.919 kb on + strand at 66.920 kb on - strand at 66.936 kb on + strand at 66.937 kb on - strand at 66.937 kb on - strand at 67.194 kb on + strand at 67.194 kb on + strand at 67.194 kb on + strand at 67.194 kb on + strand at 67.194 kb on + strand at 67.194 kb on + strand at 67.194 kb on + strand at 67.194 kb on + strand at 67.194 kb on + strand at 67.194 kb on + strand at 67.194 kb on + strand at 67.194 kb on + strand at 67.194 kb on + strand at 67.194 kb on + strand at 67.194 kb on + strand at 67.194 kb on + strand at 67.194 kb on + strand at 67.194 kb on + strand at 67.194 kb on + strand at 67.194 kb on + strand at 67.195 kb on - strand at 67.195 kb on - strand at 67.195 kb on - strand at 67.195 kb on - strand at 67.195 kb on - strand at 67.195 kb on - strand at 67.195 kb on - strand at 67.195 kb on - strand at 67.195 kb on - strand at 67.195 kb on - strand at 67.195 kb on - strand at 67.195 kb on - strand at 67.195 kb on - strand at 67.195 kb on - strand at 67.195 kb on - strand at 67.195 kb on - strand at 67.195 kb on - strand at 67.195 kb on - strand at 67.195 kb on - strand at 67.195 kb on - strand at 67.195 kb on - strand at 67.400 kb on + strand at 67.401 kb on - strand at 67.425 kb on - strand at 67.428 kb on - strand at 67.626 kb on + strand, within OKGIIK_00275 at 67.626 kb on + strand, within OKGIIK_00275 at 67.626 kb on + strand, within OKGIIK_00275 at 67.627 kb on - strand, within OKGIIK_00275
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Metal_ion_mix_sitestressplate 2 x remove 65,261 + OKGIIK_00255 0.56 +1.1 65,262 - OKGIIK_00255 0.56 +0.1 65,262 - OKGIIK_00255 0.56 +2.7 65,372 + OKGIIK_00255 0.73 -0.0 65,372 + OKGIIK_00255 0.73 -2.3 65,373 - OKGIIK_00255 0.73 +1.1 65,373 - OKGIIK_00255 0.73 -0.8 65,373 - OKGIIK_00255 0.73 -0.5 65,373 - OKGIIK_00255 0.73 +0.5 65,373 - OKGIIK_00255 0.73 -2.3 65,373 - OKGIIK_00255 0.73 +0.0 65,396 + OKGIIK_00255 0.76 +0.7 65,397 - OKGIIK_00255 0.76 -0.9 65,430 + OKGIIK_00255 0.81 +0.6 65,430 + OKGIIK_00255 0.81 -0.8 65,431 - OKGIIK_00255 0.81 -0.5 65,431 - OKGIIK_00255 0.81 -1.6 65,431 - OKGIIK_00255 0.81 -2.3 65,431 - OKGIIK_00255 0.81 -0.8 65,473 - OKGIIK_00255 0.87 +0.1 65,473 - OKGIIK_00255 0.87 -0.9 65,547 + +0.2 65,548 - +1.1 65,548 - +1.1 65,548 - +1.1 65,613 + +0.1 65,613 + -1.4 65,732 - OKGIIK_00260 0.80 -0.8 65,822 + OKGIIK_00265 0.10 -0.9 65,822 + OKGIIK_00265 0.10 +0.1 65,997 + -2.1 65,997 + -1.2 65,997 + -1.3 65,997 + -0.1 65,998 - -2.2 65,998 - +0.1 65,998 - -0.4 65,998 - +1.1 65,998 - -1.3 66,028 + -0.9 66,028 + +0.1 66,028 + -0.3 66,029 - -0.9 66,029 - -1.3 66,029 - +1.5 66,051 - +0.8 66,051 - -1.5 66,077 + -3.3 66,077 + -0.4 66,077 + +0.1 66,078 - -1.9 66,078 - +3.1 66,078 - -0.4 66,129 + -1.2 66,129 + +0.5 66,129 + +1.1 66,129 + -3.6 66,129 + +1.1 66,129 + -1.7 66,129 + -2.5 66,130 - -3.0 66,160 + -1.6 66,161 - +0.1 66,161 - +0.7 66,173 + -0.9 66,173 + -1.5 66,173 + -1.7 66,182 + +0.4 66,182 + -1.3 66,182 + -0.9 66,182 + -1.7 66,182 + +1.5 66,182 + -2.5 66,183 - +1.5 66,245 + OKGIIK_00270 0.12 +0.1 66,245 + OKGIIK_00270 0.12 -1.5 66,246 - OKGIIK_00270 0.12 -0.7 66,246 - OKGIIK_00270 0.12 +1.1 66,356 - OKGIIK_00270 0.29 -0.5 66,560 + OKGIIK_00270 0.62 -1.8 66,560 + OKGIIK_00270 0.62 -1.7 66,560 + OKGIIK_00270 0.62 -1.1 66,560 + OKGIIK_00270 0.62 -0.5 66,561 - OKGIIK_00270 0.62 +0.6 66,561 - OKGIIK_00270 0.62 -1.5 66,561 - OKGIIK_00270 0.62 -0.9 66,651 - OKGIIK_00270 0.76 -2.1 66,672 + OKGIIK_00270 0.79 -2.6 66,673 - OKGIIK_00270 0.80 -1.7 66,673 - OKGIIK_00270 0.80 -0.9 66,732 - OKGIIK_00270 0.89 +0.1 66,801 + -1.7 66,801 + -0.7 66,801 + -0.9 66,801 + +1.6 66,802 - -2.6 66,802 - +1.7 66,802 - -1.7 66,802 - -0.8 66,867 + -2.4 66,867 + -0.9 66,867 + -0.2 66,867 + -0.7 66,868 - +0.2 66,868 - +0.1 66,868 - -1.7 66,868 - -0.7 66,868 - +1.7 66,868 - -0.5 66,919 + -1.6 66,920 - -2.1 66,936 + -0.9 66,937 - -0.1 66,937 - -2.1 67,194 + -2.3 67,194 + -0.4 67,194 + -1.5 67,194 + -1.7 67,194 + -1.4 67,194 + -2.5 67,194 + -1.3 67,194 + -0.6 67,194 + -0.8 67,194 + -0.5 67,194 + +0.6 67,194 + -1.5 67,194 + +0.3 67,194 + -1.5 67,194 + -1.7 67,194 + -0.2 67,194 + -0.9 67,194 + -2.7 67,194 + +0.1 67,194 + -0.5 67,195 - -0.5 67,195 - -0.3 67,195 - -0.5 67,195 - +0.5 67,195 - -1.0 67,195 - +2.5 67,195 - -0.2 67,195 - +0.1 67,195 - +1.1 67,195 - +0.8 67,195 - -1.0 67,195 - -0.5 67,195 - +0.7 67,195 - -0.3 67,195 - -1.5 67,195 - +0.3 67,195 - -2.3 67,195 - -1.2 67,195 - +0.7 67,195 - -2.4 67,195 - +0.7 67,400 + +0.1 67,401 - -1.7 67,425 - +1.4 67,428 - -0.9 67,626 + OKGIIK_00275 0.47 +0.4 67,626 + OKGIIK_00275 0.47 +0.4 67,626 + OKGIIK_00275 0.47 -0.5 67,627 - OKGIIK_00275 0.47 -1.7
Or see this region's nucleotide sequence