Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_10080

Experiment: R2A_PIPES with Zinc chloride 640 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_10065 and Pro_trna are separated by 146 nucleotidesPro_trna and soxR are separated by 50 nucleotidessoxR and ihfA overlap by 20 nucleotidesihfA and OKGIIK_10085 are separated by 1 nucleotides OKGIIK_10065: OKGIIK_10065 - hypothetical protein, at 2,172,494 to 2,173,243 _10065 OKGIIK_10070: Pro_trna - tRNA-Pro, at 2,173,390 to 2,173,466 _trna OKGIIK_10075: soxR - MerR family transcriptional regulator, at 2,173,517 to 2,173,873 soxR OKGIIK_10080: ihfA - integration host factor subunit alpha, at 2,173,854 to 2,174,153 ihfA OKGIIK_10085: OKGIIK_10085 - Phenylalanine--tRNA ligase beta subunit, at 2,174,155 to 2,176,584 _10085 Position (kb) 2173 2174 2175Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2172.867 kb on + strand, within OKGIIK_10065at 2172.867 kb on + strand, within OKGIIK_10065at 2172.868 kb on - strand, within OKGIIK_10065at 2172.868 kb on - strand, within OKGIIK_10065at 2172.868 kb on - strand, within OKGIIK_10065at 2172.942 kb on + strand, within OKGIIK_10065at 2172.942 kb on + strand, within OKGIIK_10065at 2172.942 kb on + strand, within OKGIIK_10065at 2172.942 kb on + strand, within OKGIIK_10065at 2172.942 kb on + strand, within OKGIIK_10065at 2172.942 kb on + strand, within OKGIIK_10065at 2172.942 kb on + strand, within OKGIIK_10065at 2172.942 kb on + strand, within OKGIIK_10065at 2172.942 kb on + strand, within OKGIIK_10065at 2172.942 kb on + strand, within OKGIIK_10065at 2172.942 kb on + strand, within OKGIIK_10065at 2172.942 kb on + strand, within OKGIIK_10065at 2172.942 kb on + strand, within OKGIIK_10065at 2172.942 kb on + strand, within OKGIIK_10065at 2172.942 kb on + strand, within OKGIIK_10065at 2172.942 kb on + strand, within OKGIIK_10065at 2172.942 kb on + strand, within OKGIIK_10065at 2172.942 kb on + strand, within OKGIIK_10065at 2172.942 kb on + strand, within OKGIIK_10065at 2172.942 kb on + strand, within OKGIIK_10065at 2172.942 kb on + strand, within OKGIIK_10065at 2172.942 kb on + strand, within OKGIIK_10065at 2172.942 kb on + strand, within OKGIIK_10065at 2172.942 kb on + strand, within OKGIIK_10065at 2172.943 kb on - strand, within OKGIIK_10065at 2172.943 kb on - strand, within OKGIIK_10065at 2172.943 kb on - strand, within OKGIIK_10065at 2172.943 kb on - strand, within OKGIIK_10065at 2172.943 kb on - strand, within OKGIIK_10065at 2172.943 kb on - strand, within OKGIIK_10065at 2172.943 kb on - strand, within OKGIIK_10065at 2172.943 kb on - strand, within OKGIIK_10065at 2172.943 kb on - strand, within OKGIIK_10065at 2172.943 kb on - strand, within OKGIIK_10065at 2172.943 kb on - strand, within OKGIIK_10065at 2172.943 kb on - strand, within OKGIIK_10065at 2172.943 kb on - strand, within OKGIIK_10065at 2172.943 kb on - strand, within OKGIIK_10065at 2172.943 kb on - strand, within OKGIIK_10065at 2172.943 kb on - strand, within OKGIIK_10065at 2172.943 kb on - strand, within OKGIIK_10065at 2172.943 kb on - strand, within OKGIIK_10065at 2172.943 kb on - strand, within OKGIIK_10065at 2172.943 kb on - strand, within OKGIIK_10065at 2172.943 kb on - strand, within OKGIIK_10065at 2172.943 kb on - strand, within OKGIIK_10065at 2172.943 kb on - strand, within OKGIIK_10065at 2172.943 kb on - strand, within OKGIIK_10065at 2172.943 kb on - strand, within OKGIIK_10065at 2173.062 kb on + strand, within OKGIIK_10065at 2173.062 kb on + strand, within OKGIIK_10065at 2173.062 kb on + strand, within OKGIIK_10065at 2173.062 kb on + strand, within OKGIIK_10065at 2173.062 kb on + strand, within OKGIIK_10065at 2173.062 kb on + strand, within OKGIIK_10065at 2173.062 kb on + strand, within OKGIIK_10065at 2173.062 kb on + strand, within OKGIIK_10065at 2173.062 kb on + strand, within OKGIIK_10065at 2173.062 kb on + strand, within OKGIIK_10065at 2173.062 kb on + strand, within OKGIIK_10065at 2173.062 kb on + strand, within OKGIIK_10065at 2173.062 kb on + strand, within OKGIIK_10065at 2173.062 kb on + strand, within OKGIIK_10065at 2173.062 kb on + strand, within OKGIIK_10065at 2173.062 kb on + strand, within OKGIIK_10065at 2173.062 kb on + strand, within OKGIIK_10065at 2173.062 kb on + strand, within OKGIIK_10065at 2173.062 kb on + strand, within OKGIIK_10065at 2173.062 kb on + strand, within OKGIIK_10065at 2173.062 kb on + strand, within OKGIIK_10065at 2173.062 kb on + strand, within OKGIIK_10065at 2173.062 kb on + strand, within OKGIIK_10065at 2173.062 kb on + strand, within OKGIIK_10065at 2173.062 kb on + strand, within OKGIIK_10065at 2173.062 kb on + strand, within OKGIIK_10065at 2173.062 kb on + strand, within OKGIIK_10065at 2173.062 kb on + strand, within OKGIIK_10065at 2173.062 kb on + strand, within OKGIIK_10065at 2173.062 kb on + strand, within OKGIIK_10065at 2173.062 kb on + strand, within OKGIIK_10065at 2173.062 kb on + strand, within OKGIIK_10065at 2173.062 kb on + strand, within OKGIIK_10065at 2173.062 kb on + strand, within OKGIIK_10065at 2173.062 kb on + strand, within OKGIIK_10065at 2173.062 kb on + strand, within OKGIIK_10065at 2173.063 kb on - strand, within OKGIIK_10065at 2173.063 kb on - strand, within OKGIIK_10065at 2173.063 kb on - strand, within OKGIIK_10065at 2173.063 kb on - strand, within OKGIIK_10065at 2173.063 kb on - strand, within OKGIIK_10065at 2173.063 kb on - strand, within OKGIIK_10065at 2173.063 kb on - strand, within OKGIIK_10065at 2173.063 kb on - strand, within OKGIIK_10065at 2173.063 kb on - strand, within OKGIIK_10065at 2173.063 kb on - strand, within OKGIIK_10065at 2173.063 kb on - strand, within OKGIIK_10065at 2173.063 kb on - strand, within OKGIIK_10065at 2173.063 kb on - strand, within OKGIIK_10065at 2173.063 kb on - strand, within OKGIIK_10065at 2173.063 kb on - strand, within OKGIIK_10065at 2173.063 kb on - strand, within OKGIIK_10065at 2173.063 kb on - strand, within OKGIIK_10065at 2173.063 kb on - strand, within OKGIIK_10065at 2173.063 kb on - strand, within OKGIIK_10065at 2173.063 kb on - strand, within OKGIIK_10065at 2173.063 kb on - strand, within OKGIIK_10065at 2173.063 kb on - strand, within OKGIIK_10065at 2173.063 kb on - strand, within OKGIIK_10065at 2173.063 kb on - strand, within OKGIIK_10065at 2173.063 kb on - strand, within OKGIIK_10065at 2173.063 kb on - strand, within OKGIIK_10065at 2173.063 kb on - strand, within OKGIIK_10065at 2173.063 kb on - strand, within OKGIIK_10065at 2173.063 kb on - strand, within OKGIIK_10065at 2173.063 kb on - strand, within OKGIIK_10065at 2173.063 kb on - strand, within OKGIIK_10065at 2173.086 kb on + strand, within OKGIIK_10065at 2173.086 kb on + strand, within OKGIIK_10065at 2173.087 kb on - strand, within OKGIIK_10065at 2173.087 kb on - strand, within OKGIIK_10065at 2173.098 kb on + strand, within OKGIIK_10065at 2173.098 kb on + strand, within OKGIIK_10065at 2173.099 kb on - strand, within OKGIIK_10065at 2173.099 kb on - strand, within OKGIIK_10065at 2173.099 kb on - strand, within OKGIIK_10065at 2173.099 kb on - strand, within OKGIIK_10065at 2173.182 kb on + strandat 2173.182 kb on + strandat 2173.182 kb on + strandat 2173.182 kb on + strandat 2173.182 kb on + strandat 2173.182 kb on + strandat 2173.182 kb on + strandat 2173.183 kb on - strandat 2173.183 kb on - strandat 2173.183 kb on - strandat 2173.183 kb on - strandat 2173.183 kb on - strandat 2173.183 kb on - strandat 2173.183 kb on - strandat 2173.183 kb on - strandat 2173.183 kb on - strandat 2173.183 kb on - strandat 2173.183 kb on - strandat 2173.183 kb on - strandat 2173.248 kb on + strandat 2173.249 kb on + strandat 2173.249 kb on + strandat 2173.249 kb on + strandat 2173.249 kb on + strandat 2173.249 kb on + strandat 2173.249 kb on + strandat 2173.250 kb on - strandat 2173.250 kb on - strandat 2173.250 kb on - strandat 2173.250 kb on - strandat 2173.250 kb on - strandat 2173.250 kb on - strandat 2173.250 kb on - strandat 2173.250 kb on - strandat 2173.250 kb on - strandat 2173.250 kb on - strandat 2173.250 kb on - strandat 2173.250 kb on - strandat 2173.250 kb on - strandat 2173.250 kb on - strandat 2173.250 kb on - strandat 2173.250 kb on - strandat 2173.283 kb on + strandat 2173.491 kb on - strandat 2173.491 kb on - strandat 2173.491 kb on - strandat 2173.491 kb on - strandat 2173.491 kb on - strandat 2173.491 kb on - strandat 2173.491 kb on - strandat 2173.491 kb on - strandat 2173.529 kb on + strandat 2173.529 kb on + strandat 2173.856 kb on - strandat 2173.856 kb on - strandat 2173.856 kb on - strandat 2173.874 kb on - strandat 2173.874 kb on - strandat 2173.874 kb on - strandat 2173.874 kb on - strandat 2173.874 kb on - strandat 2173.874 kb on - strandat 2173.874 kb on - strandat 2173.874 kb on - strandat 2173.874 kb on - strandat 2173.874 kb on - strandat 2173.874 kb on - strandat 2173.874 kb on - strandat 2173.874 kb on - strandat 2173.888 kb on - strand, within ihfAat 2173.888 kb on - strand, within ihfAat 2173.888 kb on - strand, within ihfAat 2173.888 kb on - strand, within ihfAat 2173.888 kb on - strand, within ihfAat 2173.888 kb on - strand, within ihfAat 2173.888 kb on - strand, within ihfA

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Zinc chloride 640 uM
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2,172,867 + OKGIIK_10065 0.50 -2.5
2,172,867 + OKGIIK_10065 0.50 -2.1
2,172,868 - OKGIIK_10065 0.50 -0.5
2,172,868 - OKGIIK_10065 0.50 -1.5
2,172,868 - OKGIIK_10065 0.50 +0.7
2,172,942 + OKGIIK_10065 0.60 -0.5
2,172,942 + OKGIIK_10065 0.60 -1.1
2,172,942 + OKGIIK_10065 0.60 +0.6
2,172,942 + OKGIIK_10065 0.60 +0.5
2,172,942 + OKGIIK_10065 0.60 +1.5
2,172,942 + OKGIIK_10065 0.60 -1.1
2,172,942 + OKGIIK_10065 0.60 -0.8
2,172,942 + OKGIIK_10065 0.60 -0.5
2,172,942 + OKGIIK_10065 0.60 -0.9
2,172,942 + OKGIIK_10065 0.60 +0.2
2,172,942 + OKGIIK_10065 0.60 +2.0
2,172,942 + OKGIIK_10065 0.60 -1.2
2,172,942 + OKGIIK_10065 0.60 -3.0
2,172,942 + OKGIIK_10065 0.60 +1.1
2,172,942 + OKGIIK_10065 0.60 -0.4
2,172,942 + OKGIIK_10065 0.60 +0.5
2,172,942 + OKGIIK_10065 0.60 +0.0
2,172,942 + OKGIIK_10065 0.60 +1.5
2,172,942 + OKGIIK_10065 0.60 +1.2
2,172,942 + OKGIIK_10065 0.60 -0.5
2,172,942 + OKGIIK_10065 0.60 -0.5
2,172,942 + OKGIIK_10065 0.60 +0.5
2,172,942 + OKGIIK_10065 0.60 +0.9
2,172,942 + OKGIIK_10065 0.60 +1.2
2,172,943 - OKGIIK_10065 0.60 -0.3
2,172,943 - OKGIIK_10065 0.60 -1.9
2,172,943 - OKGIIK_10065 0.60 -2.6
2,172,943 - OKGIIK_10065 0.60 +1.5
2,172,943 - OKGIIK_10065 0.60 +1.5
2,172,943 - OKGIIK_10065 0.60 +1.5
2,172,943 - OKGIIK_10065 0.60 -1.5
2,172,943 - OKGIIK_10065 0.60 -1.0
2,172,943 - OKGIIK_10065 0.60 +0.5
2,172,943 - OKGIIK_10065 0.60 -0.9
2,172,943 - OKGIIK_10065 0.60 +3.8
2,172,943 - OKGIIK_10065 0.60 +1.5
2,172,943 - OKGIIK_10065 0.60 +0.9
2,172,943 - OKGIIK_10065 0.60 -0.3
2,172,943 - OKGIIK_10065 0.60 +2.8
2,172,943 - OKGIIK_10065 0.60 +0.2
2,172,943 - OKGIIK_10065 0.60 -2.4
2,172,943 - OKGIIK_10065 0.60 -0.7
2,172,943 - OKGIIK_10065 0.60 -0.1
2,172,943 - OKGIIK_10065 0.60 +1.5
2,172,943 - OKGIIK_10065 0.60 -2.2
2,172,943 - OKGIIK_10065 0.60 -2.5
2,172,943 - OKGIIK_10065 0.60 -0.5
2,172,943 - OKGIIK_10065 0.60 -0.1
2,172,943 - OKGIIK_10065 0.60 +0.9
2,173,062 + OKGIIK_10065 0.76 +0.5
2,173,062 + OKGIIK_10065 0.76 -1.4
2,173,062 + OKGIIK_10065 0.76 -2.5
2,173,062 + OKGIIK_10065 0.76 -1.1
2,173,062 + OKGIIK_10065 0.76 -0.9
2,173,062 + OKGIIK_10065 0.76 -1.5
2,173,062 + OKGIIK_10065 0.76 -0.5
2,173,062 + OKGIIK_10065 0.76 -1.9
2,173,062 + OKGIIK_10065 0.76 +1.2
2,173,062 + OKGIIK_10065 0.76 +0.2
2,173,062 + OKGIIK_10065 0.76 -1.0
2,173,062 + OKGIIK_10065 0.76 +0.1
2,173,062 + OKGIIK_10065 0.76 +1.9
2,173,062 + OKGIIK_10065 0.76 +2.5
2,173,062 + OKGIIK_10065 0.76 +0.8
2,173,062 + OKGIIK_10065 0.76 +0.9
2,173,062 + OKGIIK_10065 0.76 -0.3
2,173,062 + OKGIIK_10065 0.76 +0.0
2,173,062 + OKGIIK_10065 0.76 -2.5
2,173,062 + OKGIIK_10065 0.76 -1.2
2,173,062 + OKGIIK_10065 0.76 +0.5
2,173,062 + OKGIIK_10065 0.76 -1.4
2,173,062 + OKGIIK_10065 0.76 -1.9
2,173,062 + OKGIIK_10065 0.76 -1.7
2,173,062 + OKGIIK_10065 0.76 -0.4
2,173,062 + OKGIIK_10065 0.76 +0.8
2,173,062 + OKGIIK_10065 0.76 -2.6
2,173,062 + OKGIIK_10065 0.76 +0.1
2,173,062 + OKGIIK_10065 0.76 +1.6
2,173,062 + OKGIIK_10065 0.76 +0.5
2,173,062 + OKGIIK_10065 0.76 -0.2
2,173,062 + OKGIIK_10065 0.76 +1.0
2,173,062 + OKGIIK_10065 0.76 -1.1
2,173,062 + OKGIIK_10065 0.76 +2.0
2,173,062 + OKGIIK_10065 0.76 -2.2
2,173,062 + OKGIIK_10065 0.76 +1.5
2,173,063 - OKGIIK_10065 0.76 -1.4
2,173,063 - OKGIIK_10065 0.76 -0.3
2,173,063 - OKGIIK_10065 0.76 +1.1
2,173,063 - OKGIIK_10065 0.76 -0.5
2,173,063 - OKGIIK_10065 0.76 -1.5
2,173,063 - OKGIIK_10065 0.76 +0.2
2,173,063 - OKGIIK_10065 0.76 -1.1
2,173,063 - OKGIIK_10065 0.76 -1.9
2,173,063 - OKGIIK_10065 0.76 -1.7
2,173,063 - OKGIIK_10065 0.76 -0.5
2,173,063 - OKGIIK_10065 0.76 -1.1
2,173,063 - OKGIIK_10065 0.76 -0.1
2,173,063 - OKGIIK_10065 0.76 +1.2
2,173,063 - OKGIIK_10065 0.76 -0.0
2,173,063 - OKGIIK_10065 0.76 -1.0
2,173,063 - OKGIIK_10065 0.76 +1.5
2,173,063 - OKGIIK_10065 0.76 +0.5
2,173,063 - OKGIIK_10065 0.76 -2.5
2,173,063 - OKGIIK_10065 0.76 +2.4
2,173,063 - OKGIIK_10065 0.76 +0.9
2,173,063 - OKGIIK_10065 0.76 -0.7
2,173,063 - OKGIIK_10065 0.76 +0.3
2,173,063 - OKGIIK_10065 0.76 -0.0
2,173,063 - OKGIIK_10065 0.76 -0.9
2,173,063 - OKGIIK_10065 0.76 +1.5
2,173,063 - OKGIIK_10065 0.76 +1.5
2,173,063 - OKGIIK_10065 0.76 -1.6
2,173,063 - OKGIIK_10065 0.76 +1.3
2,173,063 - OKGIIK_10065 0.76 -1.5
2,173,063 - OKGIIK_10065 0.76 +0.3
2,173,063 - OKGIIK_10065 0.76 -1.5
2,173,086 + OKGIIK_10065 0.79 -0.1
2,173,086 + OKGIIK_10065 0.79 -0.1
2,173,087 - OKGIIK_10065 0.79 -0.5
2,173,087 - OKGIIK_10065 0.79 -1.8
2,173,098 + OKGIIK_10065 0.81 -1.1
2,173,098 + OKGIIK_10065 0.81 -1.4
2,173,099 - OKGIIK_10065 0.81 +0.5
2,173,099 - OKGIIK_10065 0.81 -1.7
2,173,099 - OKGIIK_10065 0.81 +0.5
2,173,099 - OKGIIK_10065 0.81 -0.5
2,173,182 + -1.4
2,173,182 + -0.5
2,173,182 + -0.1
2,173,182 + +1.2
2,173,182 + -0.5
2,173,182 + -1.0
2,173,182 + -1.1
2,173,183 - -0.5
2,173,183 - +0.2
2,173,183 - -0.5
2,173,183 - +0.5
2,173,183 - -1.1
2,173,183 - +0.5
2,173,183 - -0.0
2,173,183 - +0.3
2,173,183 - -0.3
2,173,183 - -0.1
2,173,183 - -0.1
2,173,183 - -0.2
2,173,248 + -0.1
2,173,249 + +0.9
2,173,249 + -0.4
2,173,249 + +1.9
2,173,249 + -2.0
2,173,249 + -0.5
2,173,249 + -1.9
2,173,250 - -0.1
2,173,250 - -0.2
2,173,250 - -2.6
2,173,250 - +0.5
2,173,250 - -2.2
2,173,250 - -1.9
2,173,250 - +0.1
2,173,250 - -1.9
2,173,250 - -1.1
2,173,250 - +0.2
2,173,250 - -1.7
2,173,250 - +1.3
2,173,250 - -1.7
2,173,250 - -0.6
2,173,250 - -1.4
2,173,250 - +0.1
2,173,283 + -0.5
2,173,491 - -1.4
2,173,491 - -0.5
2,173,491 - -1.1
2,173,491 - +1.5
2,173,491 - -0.5
2,173,491 - +0.6
2,173,491 - -0.5
2,173,491 - -1.1
2,173,529 + +0.9
2,173,529 + -2.0
2,173,856 - +0.0
2,173,856 - -0.1
2,173,856 - -1.1
2,173,874 - +3.8
2,173,874 - -2.0
2,173,874 - +0.0
2,173,874 - +1.5
2,173,874 - -1.1
2,173,874 - -0.7
2,173,874 - -0.1
2,173,874 - -1.5
2,173,874 - -1.9
2,173,874 - -1.7
2,173,874 - -0.9
2,173,874 - -1.0
2,173,874 - -2.4
2,173,888 - ihfA OKGIIK_10080 0.11 -1.5
2,173,888 - ihfA OKGIIK_10080 0.11 -0.9
2,173,888 - ihfA OKGIIK_10080 0.11 -0.1
2,173,888 - ihfA OKGIIK_10080 0.11 -0.5
2,173,888 - ihfA OKGIIK_10080 0.11 -1.4
2,173,888 - ihfA OKGIIK_10080 0.11 -1.5
2,173,888 - ihfA OKGIIK_10080 0.11 -0.5

Or see this region's nucleotide sequence