Strain Fitness in Pseudomonas sp. RS175 around PFR28_01141

Experiment: D-Glucose (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_01140 and PFR28_01141 overlap by 1 nucleotidesPFR28_01141 and PFR28_01142 are separated by 97 nucleotides PFR28_01140: PFR28_01140 - Regulator of RpoS, at 1,261,517 to 1,262,761 _01140 PFR28_01141: PFR28_01141 - hypothetical protein, at 1,262,761 to 1,263,249 _01141 PFR28_01142: PFR28_01142 - Transaldolase, at 1,263,347 to 1,264,273 _01142 Position (kb) 1262 1263 1264Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1263.406 kb on + strandat 1263.614 kb on - strand, within PFR28_01142at 1263.635 kb on + strand, within PFR28_01142at 1263.645 kb on + strand, within PFR28_01142at 1263.645 kb on + strand, within PFR28_01142at 1263.645 kb on + strand, within PFR28_01142at 1263.646 kb on - strand, within PFR28_01142at 1263.646 kb on - strand, within PFR28_01142at 1263.646 kb on - strand, within PFR28_01142at 1263.646 kb on - strand, within PFR28_01142at 1263.646 kb on - strand, within PFR28_01142at 1263.660 kb on + strand, within PFR28_01142at 1263.660 kb on + strand, within PFR28_01142at 1263.660 kb on + strand, within PFR28_01142at 1263.660 kb on + strand, within PFR28_01142at 1263.661 kb on - strand, within PFR28_01142at 1263.661 kb on - strand, within PFR28_01142at 1263.661 kb on - strand, within PFR28_01142at 1263.661 kb on - strand, within PFR28_01142at 1263.661 kb on - strand, within PFR28_01142at 1263.661 kb on - strand, within PFR28_01142at 1263.661 kb on - strand, within PFR28_01142at 1263.663 kb on + strand, within PFR28_01142at 1263.663 kb on + strand, within PFR28_01142at 1263.663 kb on + strand, within PFR28_01142at 1263.663 kb on + strand, within PFR28_01142at 1263.663 kb on + strand, within PFR28_01142at 1263.663 kb on + strand, within PFR28_01142at 1263.664 kb on - strand, within PFR28_01142at 1263.664 kb on - strand, within PFR28_01142at 1263.664 kb on - strand, within PFR28_01142at 1263.669 kb on + strand, within PFR28_01142at 1263.669 kb on + strand, within PFR28_01142at 1263.669 kb on + strand, within PFR28_01142at 1263.669 kb on + strand, within PFR28_01142at 1263.669 kb on + strand, within PFR28_01142at 1263.669 kb on + strand, within PFR28_01142at 1263.669 kb on + strand, within PFR28_01142at 1263.669 kb on + strand, within PFR28_01142at 1263.669 kb on + strand, within PFR28_01142at 1263.669 kb on + strand, within PFR28_01142at 1263.669 kb on + strand, within PFR28_01142at 1263.670 kb on - strand, within PFR28_01142at 1263.670 kb on - strand, within PFR28_01142at 1263.670 kb on - strand, within PFR28_01142at 1263.670 kb on - strand, within PFR28_01142at 1263.670 kb on - strand, within PFR28_01142at 1263.670 kb on - strand, within PFR28_01142at 1263.670 kb on - strand, within PFR28_01142at 1263.670 kb on - strand, within PFR28_01142at 1263.714 kb on + strand, within PFR28_01142at 1263.714 kb on + strand, within PFR28_01142at 1263.715 kb on - strand, within PFR28_01142at 1263.739 kb on - strand, within PFR28_01142at 1263.739 kb on - strand, within PFR28_01142at 1263.739 kb on - strand, within PFR28_01142at 1263.739 kb on - strand, within PFR28_01142at 1263.739 kb on - strand, within PFR28_01142at 1263.747 kb on + strand, within PFR28_01142at 1263.747 kb on + strand, within PFR28_01142at 1263.747 kb on + strand, within PFR28_01142at 1263.747 kb on + strand, within PFR28_01142at 1263.747 kb on + strand, within PFR28_01142at 1263.748 kb on - strand, within PFR28_01142at 1263.748 kb on - strand, within PFR28_01142at 1263.751 kb on + strand, within PFR28_01142at 1263.751 kb on + strand, within PFR28_01142at 1263.752 kb on - strand, within PFR28_01142at 1263.752 kb on - strand, within PFR28_01142at 1263.752 kb on - strand, within PFR28_01142at 1263.753 kb on - strand, within PFR28_01142at 1263.759 kb on - strand, within PFR28_01142at 1263.780 kb on - strand, within PFR28_01142at 1263.780 kb on - strand, within PFR28_01142at 1263.939 kb on + strand, within PFR28_01142at 1263.940 kb on - strand, within PFR28_01142at 1263.940 kb on - strand, within PFR28_01142at 1264.018 kb on + strand, within PFR28_01142at 1264.018 kb on + strand, within PFR28_01142at 1264.018 kb on + strand, within PFR28_01142at 1264.019 kb on - strand, within PFR28_01142at 1264.019 kb on - strand, within PFR28_01142at 1264.131 kb on + strand, within PFR28_01142at 1264.131 kb on + strand, within PFR28_01142at 1264.204 kb on + strandat 1264.204 kb on + strandat 1264.204 kb on + strandat 1264.204 kb on + strandat 1264.204 kb on + strandat 1264.205 kb on - strandat 1264.205 kb on - strandat 1264.237 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) 10 mM
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1,263,406 + -5.5
1,263,614 - PFR28_01142 0.29 -3.2
1,263,635 + PFR28_01142 0.31 -3.5
1,263,645 + PFR28_01142 0.32 -3.0
1,263,645 + PFR28_01142 0.32 -2.8
1,263,645 + PFR28_01142 0.32 -2.4
1,263,646 - PFR28_01142 0.32 -4.6
1,263,646 - PFR28_01142 0.32 -2.8
1,263,646 - PFR28_01142 0.32 -1.8
1,263,646 - PFR28_01142 0.32 -2.1
1,263,646 - PFR28_01142 0.32 -4.6
1,263,660 + PFR28_01142 0.34 -3.4
1,263,660 + PFR28_01142 0.34 -2.9
1,263,660 + PFR28_01142 0.34 -2.3
1,263,660 + PFR28_01142 0.34 -2.4
1,263,661 - PFR28_01142 0.34 -5.2
1,263,661 - PFR28_01142 0.34 -3.6
1,263,661 - PFR28_01142 0.34 -3.9
1,263,661 - PFR28_01142 0.34 -4.4
1,263,661 - PFR28_01142 0.34 -4.5
1,263,661 - PFR28_01142 0.34 -3.8
1,263,661 - PFR28_01142 0.34 -3.2
1,263,663 + PFR28_01142 0.34 -2.1
1,263,663 + PFR28_01142 0.34 -3.4
1,263,663 + PFR28_01142 0.34 -1.1
1,263,663 + PFR28_01142 0.34 -2.2
1,263,663 + PFR28_01142 0.34 -3.4
1,263,663 + PFR28_01142 0.34 -2.3
1,263,664 - PFR28_01142 0.34 -4.0
1,263,664 - PFR28_01142 0.34 -4.1
1,263,664 - PFR28_01142 0.34 -2.5
1,263,669 + PFR28_01142 0.35 -2.1
1,263,669 + PFR28_01142 0.35 -2.0
1,263,669 + PFR28_01142 0.35 -2.4
1,263,669 + PFR28_01142 0.35 -3.7
1,263,669 + PFR28_01142 0.35 -2.2
1,263,669 + PFR28_01142 0.35 -3.1
1,263,669 + PFR28_01142 0.35 -3.9
1,263,669 + PFR28_01142 0.35 -3.5
1,263,669 + PFR28_01142 0.35 -2.6
1,263,669 + PFR28_01142 0.35 -1.1
1,263,669 + PFR28_01142 0.35 -3.5
1,263,670 - PFR28_01142 0.35 -3.3
1,263,670 - PFR28_01142 0.35 -4.1
1,263,670 - PFR28_01142 0.35 -2.2
1,263,670 - PFR28_01142 0.35 -1.1
1,263,670 - PFR28_01142 0.35 -3.8
1,263,670 - PFR28_01142 0.35 -3.6
1,263,670 - PFR28_01142 0.35 -3.6
1,263,670 - PFR28_01142 0.35 -2.9
1,263,714 + PFR28_01142 0.40 -3.3
1,263,714 + PFR28_01142 0.40 -2.6
1,263,715 - PFR28_01142 0.40 -2.9
1,263,739 - PFR28_01142 0.42 -5.5
1,263,739 - PFR28_01142 0.42 -4.4
1,263,739 - PFR28_01142 0.42 -4.6
1,263,739 - PFR28_01142 0.42 -4.8
1,263,739 - PFR28_01142 0.42 -2.1
1,263,747 + PFR28_01142 0.43 -2.6
1,263,747 + PFR28_01142 0.43 -0.7
1,263,747 + PFR28_01142 0.43 -3.0
1,263,747 + PFR28_01142 0.43 -3.3
1,263,747 + PFR28_01142 0.43 -4.4
1,263,748 - PFR28_01142 0.43 -5.1
1,263,748 - PFR28_01142 0.43 -1.9
1,263,751 + PFR28_01142 0.44 -2.3
1,263,751 + PFR28_01142 0.44 -4.5
1,263,752 - PFR28_01142 0.44 -2.4
1,263,752 - PFR28_01142 0.44 -4.8
1,263,752 - PFR28_01142 0.44 -3.3
1,263,753 - PFR28_01142 0.44 -3.5
1,263,759 - PFR28_01142 0.44 -4.1
1,263,780 - PFR28_01142 0.47 -4.1
1,263,780 - PFR28_01142 0.47 -3.2
1,263,939 + PFR28_01142 0.64 -4.2
1,263,940 - PFR28_01142 0.64 -3.2
1,263,940 - PFR28_01142 0.64 -2.8
1,264,018 + PFR28_01142 0.72 -2.4
1,264,018 + PFR28_01142 0.72 -3.7
1,264,018 + PFR28_01142 0.72 -4.7
1,264,019 - PFR28_01142 0.72 -5.2
1,264,019 - PFR28_01142 0.72 -2.1
1,264,131 + PFR28_01142 0.85 -3.7
1,264,131 + PFR28_01142 0.85 -1.6
1,264,204 + -2.5
1,264,204 + -2.8
1,264,204 + -2.1
1,264,204 + -4.3
1,264,204 + -5.1
1,264,205 - -2.4
1,264,205 - -1.1
1,264,237 + -3.1

Or see this region's nucleotide sequence