Strain Fitness in Pseudomonas sp. RS175 around PFR28_01095

Experiment: D-Glucose (C) 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPFR28_01092 and PFR28_01093 overlap by 4 nucleotidesPFR28_01093 and PFR28_01094 are separated by 5 nucleotidesPFR28_01094 and PFR28_01095 are separated by 10 nucleotidesPFR28_01095 and PFR28_01096 are separated by 95 nucleotidesPFR28_01096 and PFR28_01097 are separated by 144 nucleotides PFR28_01092: PFR28_01092 - Cbb3-type cytochrome c oxidase subunit CcoP1, at 1,204,624 to 1,205,577 _01092 PFR28_01093: PFR28_01093 - hypothetical protein, at 1,205,574 to 1,205,777 _01093 PFR28_01094: PFR28_01094 - hypothetical protein, at 1,205,783 to 1,206,391 _01094 PFR28_01095: PFR28_01095 - Cbb3-type cytochrome c oxidase subunit CcoN1, at 1,206,402 to 1,207,826 _01095 PFR28_01096: PFR28_01096 - hypothetical protein, at 1,207,922 to 1,208,620 _01096 PFR28_01097: PFR28_01097 - Aerotaxis receptor, at 1,208,765 to 1,210,330 _01097 Position (kb) 1206 1207 1208Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1205.429 kb on + strand, within PFR28_01092at 1205.559 kb on + strandat 1205.560 kb on - strandat 1205.586 kb on - strandat 1205.896 kb on - strand, within PFR28_01094at 1205.939 kb on - strand, within PFR28_01094at 1206.018 kb on + strand, within PFR28_01094at 1206.019 kb on - strand, within PFR28_01094at 1206.214 kb on + strand, within PFR28_01094at 1206.216 kb on + strand, within PFR28_01094at 1206.216 kb on + strand, within PFR28_01094at 1206.216 kb on + strand, within PFR28_01094at 1206.216 kb on + strand, within PFR28_01094at 1206.216 kb on + strand, within PFR28_01094at 1206.216 kb on + strand, within PFR28_01094at 1206.216 kb on + strand, within PFR28_01094at 1206.216 kb on + strand, within PFR28_01094at 1206.216 kb on + strand, within PFR28_01094at 1206.216 kb on + strand, within PFR28_01094at 1206.216 kb on + strand, within PFR28_01094at 1206.216 kb on + strand, within PFR28_01094at 1206.216 kb on + strand, within PFR28_01094at 1206.216 kb on + strand, within PFR28_01094at 1206.216 kb on + strand, within PFR28_01094at 1206.216 kb on + strand, within PFR28_01094at 1206.216 kb on + strand, within PFR28_01094at 1206.216 kb on + strand, within PFR28_01094at 1206.216 kb on + strand, within PFR28_01094at 1206.217 kb on - strand, within PFR28_01094at 1206.217 kb on - strand, within PFR28_01094at 1206.217 kb on - strand, within PFR28_01094at 1206.217 kb on - strand, within PFR28_01094at 1206.217 kb on - strand, within PFR28_01094at 1206.217 kb on - strand, within PFR28_01094at 1206.217 kb on - strand, within PFR28_01094at 1206.217 kb on - strand, within PFR28_01094at 1206.217 kb on - strand, within PFR28_01094at 1206.217 kb on - strand, within PFR28_01094at 1206.217 kb on - strand, within PFR28_01094at 1206.249 kb on + strand, within PFR28_01094at 1206.250 kb on - strand, within PFR28_01094at 1206.250 kb on - strand, within PFR28_01094at 1206.469 kb on + strandat 1206.469 kb on + strandat 1206.470 kb on - strandat 1206.470 kb on - strandat 1206.565 kb on + strand, within PFR28_01095at 1206.565 kb on + strand, within PFR28_01095at 1206.565 kb on + strand, within PFR28_01095at 1206.565 kb on + strand, within PFR28_01095at 1206.565 kb on + strand, within PFR28_01095at 1206.565 kb on + strand, within PFR28_01095at 1206.565 kb on + strand, within PFR28_01095at 1206.643 kb on + strand, within PFR28_01095at 1206.643 kb on + strand, within PFR28_01095at 1206.643 kb on + strand, within PFR28_01095at 1206.643 kb on + strand, within PFR28_01095at 1206.643 kb on + strand, within PFR28_01095at 1206.643 kb on + strand, within PFR28_01095at 1206.643 kb on + strand, within PFR28_01095at 1206.739 kb on + strand, within PFR28_01095at 1206.739 kb on + strand, within PFR28_01095at 1206.740 kb on - strand, within PFR28_01095at 1206.740 kb on - strand, within PFR28_01095at 1206.740 kb on - strand, within PFR28_01095at 1206.930 kb on - strand, within PFR28_01095at 1206.930 kb on - strand, within PFR28_01095at 1206.930 kb on - strand, within PFR28_01095at 1207.123 kb on + strand, within PFR28_01095at 1207.123 kb on + strand, within PFR28_01095at 1207.156 kb on + strand, within PFR28_01095at 1207.156 kb on + strand, within PFR28_01095at 1207.156 kb on + strand, within PFR28_01095at 1207.157 kb on - strand, within PFR28_01095at 1207.157 kb on - strand, within PFR28_01095at 1207.159 kb on + strand, within PFR28_01095at 1207.159 kb on + strand, within PFR28_01095at 1207.159 kb on + strand, within PFR28_01095at 1207.159 kb on + strand, within PFR28_01095at 1207.160 kb on - strand, within PFR28_01095at 1207.160 kb on - strand, within PFR28_01095at 1207.160 kb on - strand, within PFR28_01095at 1207.250 kb on - strand, within PFR28_01095at 1207.258 kb on + strand, within PFR28_01095at 1207.259 kb on - strand, within PFR28_01095at 1207.354 kb on + strand, within PFR28_01095at 1207.354 kb on + strand, within PFR28_01095at 1207.354 kb on + strand, within PFR28_01095at 1207.354 kb on + strand, within PFR28_01095at 1207.354 kb on + strand, within PFR28_01095at 1207.355 kb on - strand, within PFR28_01095at 1207.355 kb on - strand, within PFR28_01095at 1207.355 kb on - strand, within PFR28_01095at 1207.355 kb on - strand, within PFR28_01095at 1207.406 kb on - strand, within PFR28_01095at 1207.460 kb on - strand, within PFR28_01095at 1207.591 kb on + strand, within PFR28_01095at 1207.684 kb on - strandat 1207.769 kb on + strandat 1207.770 kb on - strandat 1207.770 kb on - strandat 1207.795 kb on + strandat 1207.795 kb on + strandat 1207.795 kb on + strandat 1207.795 kb on + strandat 1207.795 kb on + strandat 1207.795 kb on + strandat 1207.796 kb on - strandat 1207.801 kb on + strandat 1207.801 kb on + strandat 1207.801 kb on + strandat 1207.802 kb on - strandat 1207.802 kb on - strandat 1207.814 kb on + strandat 1207.814 kb on + strandat 1207.814 kb on + strandat 1207.814 kb on + strandat 1207.814 kb on + strandat 1207.815 kb on - strandat 1207.815 kb on - strandat 1207.815 kb on - strandat 1207.895 kb on + strandat 1207.895 kb on + strandat 1207.895 kb on + strandat 1207.895 kb on + strandat 1207.896 kb on - strandat 1207.897 kb on + strandat 1207.897 kb on + strandat 1207.897 kb on + strandat 1207.898 kb on - strandat 1207.898 kb on - strandat 1207.898 kb on - strandat 1207.898 kb on - strandat 1207.992 kb on + strand, within PFR28_01096at 1208.144 kb on + strand, within PFR28_01096at 1208.144 kb on + strand, within PFR28_01096at 1208.144 kb on + strand, within PFR28_01096at 1208.144 kb on + strand, within PFR28_01096at 1208.144 kb on + strand, within PFR28_01096at 1208.144 kb on + strand, within PFR28_01096at 1208.145 kb on - strand, within PFR28_01096at 1208.145 kb on - strand, within PFR28_01096at 1208.145 kb on - strand, within PFR28_01096at 1208.226 kb on - strand, within PFR28_01096at 1208.243 kb on + strand, within PFR28_01096at 1208.243 kb on + strand, within PFR28_01096at 1208.243 kb on + strand, within PFR28_01096at 1208.243 kb on + strand, within PFR28_01096at 1208.244 kb on - strand, within PFR28_01096at 1208.244 kb on - strand, within PFR28_01096at 1208.244 kb on - strand, within PFR28_01096at 1208.354 kb on + strand, within PFR28_01096at 1208.354 kb on + strand, within PFR28_01096at 1208.354 kb on + strand, within PFR28_01096at 1208.354 kb on + strand, within PFR28_01096at 1208.354 kb on + strand, within PFR28_01096at 1208.354 kb on + strand, within PFR28_01096at 1208.354 kb on + strand, within PFR28_01096at 1208.354 kb on + strand, within PFR28_01096at 1208.355 kb on - strand, within PFR28_01096at 1208.355 kb on - strand, within PFR28_01096at 1208.355 kb on - strand, within PFR28_01096at 1208.355 kb on - strand, within PFR28_01096at 1208.355 kb on - strand, within PFR28_01096at 1208.471 kb on + strand, within PFR28_01096at 1208.471 kb on + strand, within PFR28_01096at 1208.471 kb on + strand, within PFR28_01096at 1208.472 kb on - strand, within PFR28_01096at 1208.472 kb on - strand, within PFR28_01096at 1208.473 kb on + strand, within PFR28_01096at 1208.473 kb on + strand, within PFR28_01096at 1208.473 kb on + strand, within PFR28_01096at 1208.473 kb on + strand, within PFR28_01096at 1208.473 kb on + strand, within PFR28_01096at 1208.473 kb on + strand, within PFR28_01096at 1208.473 kb on + strand, within PFR28_01096at 1208.473 kb on + strand, within PFR28_01096at 1208.473 kb on + strand, within PFR28_01096at 1208.473 kb on + strand, within PFR28_01096at 1208.474 kb on - strand, within PFR28_01096at 1208.474 kb on - strand, within PFR28_01096at 1208.474 kb on - strand, within PFR28_01096at 1208.474 kb on - strand, within PFR28_01096at 1208.474 kb on - strand, within PFR28_01096at 1208.474 kb on - strand, within PFR28_01096at 1208.474 kb on - strand, within PFR28_01096at 1208.474 kb on - strand, within PFR28_01096at 1208.716 kb on - strandat 1208.794 kb on - strandat 1208.794 kb on - strandat 1208.800 kb on + strandat 1208.800 kb on + strandat 1208.809 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) 10 mM
remove
1,205,429 + PFR28_01092 0.84 -0.7
1,205,559 + +0.2
1,205,560 - +0.5
1,205,586 - -0.7
1,205,896 - PFR28_01094 0.19 -0.8
1,205,939 - PFR28_01094 0.26 -1.4
1,206,018 + PFR28_01094 0.39 +1.6
1,206,019 - PFR28_01094 0.39 -0.1
1,206,214 + PFR28_01094 0.71 -0.8
1,206,216 + PFR28_01094 0.71 -1.6
1,206,216 + PFR28_01094 0.71 -0.3
1,206,216 + PFR28_01094 0.71 +1.5
1,206,216 + PFR28_01094 0.71 -0.8
1,206,216 + PFR28_01094 0.71 +0.8
1,206,216 + PFR28_01094 0.71 +0.2
1,206,216 + PFR28_01094 0.71 -0.7
1,206,216 + PFR28_01094 0.71 -0.6
1,206,216 + PFR28_01094 0.71 +0.8
1,206,216 + PFR28_01094 0.71 -0.8
1,206,216 + PFR28_01094 0.71 -0.8
1,206,216 + PFR28_01094 0.71 +0.2
1,206,216 + PFR28_01094 0.71 -0.1
1,206,216 + PFR28_01094 0.71 -0.4
1,206,216 + PFR28_01094 0.71 -1.1
1,206,216 + PFR28_01094 0.71 -1.8
1,206,216 + PFR28_01094 0.71 -1.4
1,206,216 + PFR28_01094 0.71 -1.1
1,206,216 + PFR28_01094 0.71 +0.7
1,206,217 - PFR28_01094 0.71 -1.1
1,206,217 - PFR28_01094 0.71 -1.3
1,206,217 - PFR28_01094 0.71 -1.1
1,206,217 - PFR28_01094 0.71 +0.6
1,206,217 - PFR28_01094 0.71 +0.2
1,206,217 - PFR28_01094 0.71 -0.0
1,206,217 - PFR28_01094 0.71 +3.2
1,206,217 - PFR28_01094 0.71 +0.2
1,206,217 - PFR28_01094 0.71 +1.2
1,206,217 - PFR28_01094 0.71 -0.4
1,206,217 - PFR28_01094 0.71 -0.5
1,206,249 + PFR28_01094 0.77 +1.2
1,206,250 - PFR28_01094 0.77 -1.6
1,206,250 - PFR28_01094 0.77 +0.6
1,206,469 + -1.6
1,206,469 + -0.0
1,206,470 - -0.8
1,206,470 - -1.4
1,206,565 + PFR28_01095 0.11 -1.6
1,206,565 + PFR28_01095 0.11 +1.2
1,206,565 + PFR28_01095 0.11 -1.8
1,206,565 + PFR28_01095 0.11 +0.4
1,206,565 + PFR28_01095 0.11 -1.1
1,206,565 + PFR28_01095 0.11 +0.0
1,206,565 + PFR28_01095 0.11 -1.0
1,206,643 + PFR28_01095 0.17 -1.5
1,206,643 + PFR28_01095 0.17 +3.5
1,206,643 + PFR28_01095 0.17 +0.9
1,206,643 + PFR28_01095 0.17 +0.2
1,206,643 + PFR28_01095 0.17 +0.2
1,206,643 + PFR28_01095 0.17 -2.3
1,206,643 + PFR28_01095 0.17 -0.5
1,206,739 + PFR28_01095 0.24 -0.8
1,206,739 + PFR28_01095 0.24 -0.6
1,206,740 - PFR28_01095 0.24 -0.5
1,206,740 - PFR28_01095 0.24 -2.3
1,206,740 - PFR28_01095 0.24 -1.8
1,206,930 - PFR28_01095 0.37 -1.1
1,206,930 - PFR28_01095 0.37 -2.1
1,206,930 - PFR28_01095 0.37 -0.8
1,207,123 + PFR28_01095 0.51 -2.0
1,207,123 + PFR28_01095 0.51 -0.4
1,207,156 + PFR28_01095 0.53 -2.1
1,207,156 + PFR28_01095 0.53 +1.2
1,207,156 + PFR28_01095 0.53 -0.8
1,207,157 - PFR28_01095 0.53 -2.0
1,207,157 - PFR28_01095 0.53 -1.4
1,207,159 + PFR28_01095 0.53 -0.4
1,207,159 + PFR28_01095 0.53 -2.5
1,207,159 + PFR28_01095 0.53 -2.0
1,207,159 + PFR28_01095 0.53 -1.4
1,207,160 - PFR28_01095 0.53 +0.2
1,207,160 - PFR28_01095 0.53 -0.4
1,207,160 - PFR28_01095 0.53 -1.1
1,207,250 - PFR28_01095 0.60 -0.1
1,207,258 + PFR28_01095 0.60 +2.0
1,207,259 - PFR28_01095 0.60 +1.1
1,207,354 + PFR28_01095 0.67 -0.8
1,207,354 + PFR28_01095 0.67 -1.6
1,207,354 + PFR28_01095 0.67 +0.0
1,207,354 + PFR28_01095 0.67 -1.4
1,207,354 + PFR28_01095 0.67 -2.4
1,207,355 - PFR28_01095 0.67 -0.8
1,207,355 - PFR28_01095 0.67 -0.4
1,207,355 - PFR28_01095 0.67 +2.2
1,207,355 - PFR28_01095 0.67 -1.1
1,207,406 - PFR28_01095 0.70 -0.4
1,207,460 - PFR28_01095 0.74 -0.8
1,207,591 + PFR28_01095 0.83 -1.1
1,207,684 - +2.2
1,207,769 + +0.1
1,207,770 - -2.0
1,207,770 - +0.1
1,207,795 + -1.6
1,207,795 + -1.0
1,207,795 + +1.4
1,207,795 + -0.6
1,207,795 + -1.1
1,207,795 + -0.1
1,207,796 - -0.7
1,207,801 + -2.1
1,207,801 + -0.4
1,207,801 + +1.2
1,207,802 - -0.4
1,207,802 - -1.8
1,207,814 + -1.1
1,207,814 + -1.1
1,207,814 + +0.2
1,207,814 + +0.8
1,207,814 + +1.2
1,207,815 - +0.5
1,207,815 - +0.1
1,207,815 - -0.6
1,207,895 + +1.2
1,207,895 + +0.9
1,207,895 + +1.2
1,207,895 + -0.8
1,207,896 - -1.1
1,207,897 + +0.9
1,207,897 + +0.6
1,207,897 + -0.8
1,207,898 - -0.8
1,207,898 - -1.3
1,207,898 - +0.7
1,207,898 - -1.1
1,207,992 + PFR28_01096 0.10 +0.4
1,208,144 + PFR28_01096 0.32 +1.5
1,208,144 + PFR28_01096 0.32 +0.0
1,208,144 + PFR28_01096 0.32 +0.1
1,208,144 + PFR28_01096 0.32 +1.9
1,208,144 + PFR28_01096 0.32 +0.7
1,208,144 + PFR28_01096 0.32 +0.0
1,208,145 - PFR28_01096 0.32 +0.1
1,208,145 - PFR28_01096 0.32 +0.6
1,208,145 - PFR28_01096 0.32 +0.2
1,208,226 - PFR28_01096 0.43 +0.7
1,208,243 + PFR28_01096 0.46 -0.3
1,208,243 + PFR28_01096 0.46 -0.0
1,208,243 + PFR28_01096 0.46 +0.8
1,208,243 + PFR28_01096 0.46 -0.4
1,208,244 - PFR28_01096 0.46 -0.3
1,208,244 - PFR28_01096 0.46 -0.7
1,208,244 - PFR28_01096 0.46 -1.0
1,208,354 + PFR28_01096 0.62 +0.4
1,208,354 + PFR28_01096 0.62 +0.7
1,208,354 + PFR28_01096 0.62 -1.1
1,208,354 + PFR28_01096 0.62 +0.5
1,208,354 + PFR28_01096 0.62 +0.3
1,208,354 + PFR28_01096 0.62 +0.7
1,208,354 + PFR28_01096 0.62 -0.4
1,208,354 + PFR28_01096 0.62 -0.2
1,208,355 - PFR28_01096 0.62 -1.3
1,208,355 - PFR28_01096 0.62 +0.6
1,208,355 - PFR28_01096 0.62 +0.1
1,208,355 - PFR28_01096 0.62 -0.4
1,208,355 - PFR28_01096 0.62 +0.3
1,208,471 + PFR28_01096 0.79 +0.9
1,208,471 + PFR28_01096 0.79 -0.7
1,208,471 + PFR28_01096 0.79 +0.3
1,208,472 - PFR28_01096 0.79 -0.8
1,208,472 - PFR28_01096 0.79 -0.1
1,208,473 + PFR28_01096 0.79 -0.1
1,208,473 + PFR28_01096 0.79 -0.1
1,208,473 + PFR28_01096 0.79 -1.9
1,208,473 + PFR28_01096 0.79 -1.3
1,208,473 + PFR28_01096 0.79 +0.9
1,208,473 + PFR28_01096 0.79 -0.5
1,208,473 + PFR28_01096 0.79 +0.1
1,208,473 + PFR28_01096 0.79 -1.1
1,208,473 + PFR28_01096 0.79 -0.0
1,208,473 + PFR28_01096 0.79 +1.0
1,208,474 - PFR28_01096 0.79 +0.5
1,208,474 - PFR28_01096 0.79 +1.7
1,208,474 - PFR28_01096 0.79 +1.0
1,208,474 - PFR28_01096 0.79 -0.5
1,208,474 - PFR28_01096 0.79 -1.4
1,208,474 - PFR28_01096 0.79 -0.2
1,208,474 - PFR28_01096 0.79 +1.6
1,208,474 - PFR28_01096 0.79 -0.1
1,208,716 - +0.4
1,208,794 - +0.2
1,208,794 - +0.5
1,208,800 + +0.2
1,208,800 + -2.0
1,208,809 + -0.5

Or see this region's nucleotide sequence