Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_09325

Experiment: R2A_PIPES with Cobalt chloride 512 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntfeoB and feoA overlap by 4 nucleotidesfeoA and OKGIIK_09325 are separated by 116 nucleotidesOKGIIK_09325 and OKGIIK_09330 overlap by 4 nucleotidesOKGIIK_09330 and OKGIIK_09335 are separated by 102 nucleotides OKGIIK_09315: feoB - ferrous iron transport protein B, at 2,022,612 to 2,024,447 feoB OKGIIK_09320: feoA - ferrous iron transport protein A, at 2,024,444 to 2,024,689 feoA OKGIIK_09325: OKGIIK_09325 - Enoyl-CoA hydratase, at 2,024,806 to 2,025,612 _09325 OKGIIK_09330: OKGIIK_09330 - Cupin, at 2,025,609 to 2,026,127 _09330 OKGIIK_09335: OKGIIK_09335 - 3-methylcrotonyl-CoA carboxylase, at 2,026,230 to 2,028,224 _09335 Position (kb) 2024 2025 2026Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 2023.917 kb on + strand, within feoBat 2023.917 kb on + strand, within feoBat 2023.917 kb on + strand, within feoBat 2023.917 kb on + strand, within feoBat 2023.917 kb on + strand, within feoBat 2023.917 kb on + strand, within feoBat 2023.917 kb on + strand, within feoBat 2023.917 kb on + strand, within feoBat 2023.917 kb on + strand, within feoBat 2023.917 kb on + strand, within feoBat 2023.917 kb on + strand, within feoBat 2023.917 kb on + strand, within feoBat 2023.918 kb on - strand, within feoBat 2023.918 kb on - strand, within feoBat 2023.918 kb on - strand, within feoBat 2023.918 kb on - strand, within feoBat 2023.918 kb on - strand, within feoBat 2023.918 kb on - strand, within feoBat 2023.918 kb on - strand, within feoBat 2023.918 kb on - strand, within feoBat 2023.918 kb on - strand, within feoBat 2023.918 kb on - strand, within feoBat 2023.918 kb on - strand, within feoBat 2023.947 kb on + strand, within feoBat 2023.947 kb on + strand, within feoBat 2023.947 kb on + strand, within feoBat 2023.947 kb on + strand, within feoBat 2023.947 kb on + strand, within feoBat 2023.948 kb on - strand, within feoBat 2023.948 kb on - strand, within feoBat 2023.948 kb on - strand, within feoBat 2023.989 kb on + strand, within feoBat 2024.257 kb on + strand, within feoBat 2024.257 kb on + strand, within feoBat 2024.257 kb on + strand, within feoBat 2024.257 kb on + strand, within feoBat 2024.257 kb on + strand, within feoBat 2024.257 kb on + strand, within feoBat 2024.257 kb on + strand, within feoBat 2024.257 kb on + strand, within feoBat 2024.257 kb on + strand, within feoBat 2024.257 kb on + strand, within feoBat 2024.257 kb on + strand, within feoBat 2024.258 kb on - strand, within feoBat 2024.258 kb on - strand, within feoBat 2024.258 kb on - strand, within feoBat 2024.258 kb on - strand, within feoBat 2024.258 kb on - strand, within feoBat 2024.258 kb on - strand, within feoBat 2024.258 kb on - strand, within feoBat 2024.258 kb on - strand, within feoBat 2024.258 kb on - strand, within feoBat 2024.258 kb on - strand, within feoBat 2024.258 kb on - strand, within feoBat 2024.258 kb on - strand, within feoBat 2024.258 kb on - strand, within feoBat 2024.258 kb on - strand, within feoBat 2024.258 kb on - strand, within feoBat 2024.258 kb on - strand, within feoBat 2024.258 kb on - strand, within feoBat 2024.258 kb on - strand, within feoBat 2024.258 kb on - strand, within feoBat 2024.344 kb on + strandat 2024.344 kb on + strandat 2024.344 kb on + strandat 2024.344 kb on + strandat 2024.344 kb on + strandat 2024.344 kb on + strandat 2024.344 kb on + strandat 2024.345 kb on - strandat 2024.345 kb on - strandat 2024.345 kb on - strandat 2024.345 kb on - strandat 2024.345 kb on - strandat 2024.712 kb on + strandat 2024.722 kb on + strandat 2024.722 kb on + strandat 2024.723 kb on - strandat 2024.774 kb on + strandat 2024.774 kb on + strandat 2024.775 kb on - strandat 2024.775 kb on - strandat 2024.775 kb on - strandat 2024.775 kb on - strandat 2024.775 kb on - strandat 2024.785 kb on + strandat 2024.785 kb on + strandat 2024.785 kb on + strandat 2024.785 kb on + strandat 2024.785 kb on + strandat 2024.786 kb on - strandat 2025.133 kb on + strand, within OKGIIK_09325at 2025.133 kb on + strand, within OKGIIK_09325at 2025.187 kb on - strand, within OKGIIK_09325at 2025.247 kb on + strand, within OKGIIK_09325at 2025.247 kb on + strand, within OKGIIK_09325at 2025.248 kb on - strand, within OKGIIK_09325at 2025.248 kb on - strand, within OKGIIK_09325at 2025.354 kb on - strand, within OKGIIK_09325at 2025.354 kb on - strand, within OKGIIK_09325at 2025.696 kb on + strand, within OKGIIK_09330at 2025.696 kb on + strand, within OKGIIK_09330at 2025.696 kb on + strand, within OKGIIK_09330at 2025.696 kb on + strand, within OKGIIK_09330at 2025.696 kb on + strand, within OKGIIK_09330at 2025.697 kb on - strand, within OKGIIK_09330at 2025.697 kb on - strand, within OKGIIK_09330at 2025.697 kb on - strand, within OKGIIK_09330at 2025.750 kb on + strand, within OKGIIK_09330at 2025.750 kb on + strand, within OKGIIK_09330at 2025.750 kb on + strand, within OKGIIK_09330at 2025.750 kb on + strand, within OKGIIK_09330at 2025.751 kb on - strand, within OKGIIK_09330at 2025.751 kb on - strand, within OKGIIK_09330at 2025.751 kb on - strand, within OKGIIK_09330at 2025.963 kb on + strand, within OKGIIK_09330at 2025.964 kb on - strand, within OKGIIK_09330at 2025.964 kb on - strand, within OKGIIK_09330at 2025.964 kb on - strand, within OKGIIK_09330at 2025.964 kb on - strand, within OKGIIK_09330at 2026.006 kb on - strand, within OKGIIK_09330at 2026.023 kb on + strand, within OKGIIK_09330at 2026.023 kb on + strand, within OKGIIK_09330at 2026.023 kb on + strand, within OKGIIK_09330at 2026.023 kb on + strand, within OKGIIK_09330at 2026.023 kb on + strand, within OKGIIK_09330at 2026.023 kb on + strand, within OKGIIK_09330at 2026.023 kb on + strand, within OKGIIK_09330at 2026.023 kb on + strand, within OKGIIK_09330at 2026.023 kb on + strand, within OKGIIK_09330at 2026.023 kb on + strand, within OKGIIK_09330at 2026.023 kb on + strand, within OKGIIK_09330at 2026.023 kb on + strand, within OKGIIK_09330at 2026.023 kb on + strand, within OKGIIK_09330at 2026.024 kb on - strand, within OKGIIK_09330at 2026.024 kb on - strand, within OKGIIK_09330at 2026.024 kb on - strand, within OKGIIK_09330at 2026.024 kb on - strand, within OKGIIK_09330at 2026.024 kb on - strand, within OKGIIK_09330at 2026.024 kb on - strand, within OKGIIK_09330at 2026.024 kb on - strand, within OKGIIK_09330at 2026.024 kb on - strand, within OKGIIK_09330at 2026.024 kb on - strand, within OKGIIK_09330at 2026.024 kb on - strand, within OKGIIK_09330at 2026.024 kb on - strand, within OKGIIK_09330at 2026.024 kb on - strand, within OKGIIK_09330at 2026.110 kb on + strandat 2026.110 kb on + strandat 2026.110 kb on + strandat 2026.111 kb on - strandat 2026.111 kb on - strandat 2026.111 kb on - strandat 2026.111 kb on - strandat 2026.183 kb on + strandat 2026.183 kb on + strandat 2026.183 kb on + strandat 2026.183 kb on + strandat 2026.183 kb on + strandat 2026.184 kb on - strandat 2026.184 kb on - strandat 2026.184 kb on - strandat 2026.184 kb on - strandat 2026.243 kb on + strandat 2026.243 kb on + strandat 2026.243 kb on + strandat 2026.243 kb on + strandat 2026.243 kb on + strandat 2026.244 kb on - strandat 2026.244 kb on - strandat 2026.244 kb on - strandat 2026.244 kb on - strandat 2026.244 kb on - strandat 2026.244 kb on - strandat 2026.244 kb on - strandat 2026.323 kb on + strandat 2026.323 kb on + strandat 2026.323 kb on + strandat 2026.323 kb on + strandat 2026.324 kb on - strandat 2026.324 kb on - strandat 2026.324 kb on - strandat 2026.324 kb on - strandat 2026.324 kb on - strandat 2026.324 kb on - strandat 2026.324 kb on - strandat 2026.324 kb on - strandat 2026.324 kb on - strandat 2026.324 kb on - strandat 2026.407 kb on + strandat 2026.407 kb on + strandat 2026.407 kb on + strandat 2026.408 kb on - strandat 2026.408 kb on - strandat 2026.408 kb on - strandat 2026.408 kb on - strandat 2026.408 kb on - strandat 2026.408 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cobalt chloride 512 uM
remove
2,023,917 + feoB OKGIIK_09315 0.71 +1.5
2,023,917 + feoB OKGIIK_09315 0.71 +1.9
2,023,917 + feoB OKGIIK_09315 0.71 +3.8
2,023,917 + feoB OKGIIK_09315 0.71 +1.2
2,023,917 + feoB OKGIIK_09315 0.71 +4.4
2,023,917 + feoB OKGIIK_09315 0.71 +1.5
2,023,917 + feoB OKGIIK_09315 0.71 +1.0
2,023,917 + feoB OKGIIK_09315 0.71 +2.5
2,023,917 + feoB OKGIIK_09315 0.71 +2.8
2,023,917 + feoB OKGIIK_09315 0.71 +1.1
2,023,917 + feoB OKGIIK_09315 0.71 +2.4
2,023,917 + feoB OKGIIK_09315 0.71 +0.7
2,023,918 - feoB OKGIIK_09315 0.71 +2.7
2,023,918 - feoB OKGIIK_09315 0.71 +3.2
2,023,918 - feoB OKGIIK_09315 0.71 +3.2
2,023,918 - feoB OKGIIK_09315 0.71 +2.1
2,023,918 - feoB OKGIIK_09315 0.71 +1.2
2,023,918 - feoB OKGIIK_09315 0.71 +2.1
2,023,918 - feoB OKGIIK_09315 0.71 +2.2
2,023,918 - feoB OKGIIK_09315 0.71 +3.8
2,023,918 - feoB OKGIIK_09315 0.71 +3.6
2,023,918 - feoB OKGIIK_09315 0.71 +0.7
2,023,918 - feoB OKGIIK_09315 0.71 +2.4
2,023,947 + feoB OKGIIK_09315 0.73 +4.4
2,023,947 + feoB OKGIIK_09315 0.73 +2.8
2,023,947 + feoB OKGIIK_09315 0.73 +3.2
2,023,947 + feoB OKGIIK_09315 0.73 +1.1
2,023,947 + feoB OKGIIK_09315 0.73 +3.0
2,023,948 - feoB OKGIIK_09315 0.73 +5.1
2,023,948 - feoB OKGIIK_09315 0.73 +1.6
2,023,948 - feoB OKGIIK_09315 0.73 +0.6
2,023,989 + feoB OKGIIK_09315 0.75 +2.4
2,024,257 + feoB OKGIIK_09315 0.90 +1.1
2,024,257 + feoB OKGIIK_09315 0.90 +3.6
2,024,257 + feoB OKGIIK_09315 0.90 +4.9
2,024,257 + feoB OKGIIK_09315 0.90 +2.2
2,024,257 + feoB OKGIIK_09315 0.90 +0.2
2,024,257 + feoB OKGIIK_09315 0.90 +3.7
2,024,257 + feoB OKGIIK_09315 0.90 +3.1
2,024,257 + feoB OKGIIK_09315 0.90 +0.2
2,024,257 + feoB OKGIIK_09315 0.90 +2.5
2,024,257 + feoB OKGIIK_09315 0.90 +2.1
2,024,257 + feoB OKGIIK_09315 0.90 +3.6
2,024,258 - feoB OKGIIK_09315 0.90 +3.6
2,024,258 - feoB OKGIIK_09315 0.90 +3.2
2,024,258 - feoB OKGIIK_09315 0.90 +3.6
2,024,258 - feoB OKGIIK_09315 0.90 +2.7
2,024,258 - feoB OKGIIK_09315 0.90 +1.9
2,024,258 - feoB OKGIIK_09315 0.90 +3.1
2,024,258 - feoB OKGIIK_09315 0.90 +2.3
2,024,258 - feoB OKGIIK_09315 0.90 +2.4
2,024,258 - feoB OKGIIK_09315 0.90 +4.5
2,024,258 - feoB OKGIIK_09315 0.90 +2.5
2,024,258 - feoB OKGIIK_09315 0.90 +1.7
2,024,258 - feoB OKGIIK_09315 0.90 +2.1
2,024,258 - feoB OKGIIK_09315 0.90 +2.2
2,024,258 - feoB OKGIIK_09315 0.90 -1.3
2,024,258 - feoB OKGIIK_09315 0.90 +1.5
2,024,258 - feoB OKGIIK_09315 0.90 +2.6
2,024,258 - feoB OKGIIK_09315 0.90 +3.6
2,024,258 - feoB OKGIIK_09315 0.90 +3.0
2,024,258 - feoB OKGIIK_09315 0.90 +3.1
2,024,344 + +2.8
2,024,344 + +2.5
2,024,344 + +3.7
2,024,344 + +3.7
2,024,344 + +3.7
2,024,344 + +2.1
2,024,344 + +3.4
2,024,345 - +3.4
2,024,345 - +2.7
2,024,345 - +4.4
2,024,345 - -1.1
2,024,345 - +2.7
2,024,712 + +3.3
2,024,722 + +5.2
2,024,722 + +3.4
2,024,723 - -0.3
2,024,774 + +2.2
2,024,774 + +1.4
2,024,775 - -2.1
2,024,775 - -0.8
2,024,775 - +1.5
2,024,775 - -0.5
2,024,775 - -1.3
2,024,785 + +2.0
2,024,785 + +1.9
2,024,785 + +1.5
2,024,785 + -1.3
2,024,785 + -1.8
2,024,786 - -1.0
2,025,133 + OKGIIK_09325 0.41 -1.3
2,025,133 + OKGIIK_09325 0.41 -2.4
2,025,187 - OKGIIK_09325 0.47 -3.4
2,025,247 + OKGIIK_09325 0.55 -1.1
2,025,247 + OKGIIK_09325 0.55 -1.7
2,025,248 - OKGIIK_09325 0.55 +0.8
2,025,248 - OKGIIK_09325 0.55 -1.5
2,025,354 - OKGIIK_09325 0.68 -2.0
2,025,354 - OKGIIK_09325 0.68 +3.5
2,025,696 + OKGIIK_09330 0.17 -1.0
2,025,696 + OKGIIK_09330 0.17 -1.3
2,025,696 + OKGIIK_09330 0.17 -1.7
2,025,696 + OKGIIK_09330 0.17 -0.9
2,025,696 + OKGIIK_09330 0.17 -0.1
2,025,697 - OKGIIK_09330 0.17 -0.1
2,025,697 - OKGIIK_09330 0.17 +1.5
2,025,697 - OKGIIK_09330 0.17 -1.9
2,025,750 + OKGIIK_09330 0.27 -0.5
2,025,750 + OKGIIK_09330 0.27 -0.5
2,025,750 + OKGIIK_09330 0.27 +1.0
2,025,750 + OKGIIK_09330 0.27 -1.5
2,025,751 - OKGIIK_09330 0.27 +1.5
2,025,751 - OKGIIK_09330 0.27 +1.9
2,025,751 - OKGIIK_09330 0.27 +0.2
2,025,963 + OKGIIK_09330 0.68 +0.5
2,025,964 - OKGIIK_09330 0.68 +0.5
2,025,964 - OKGIIK_09330 0.68 -0.3
2,025,964 - OKGIIK_09330 0.68 -1.3
2,025,964 - OKGIIK_09330 0.68 -1.4
2,026,006 - OKGIIK_09330 0.76 -1.5
2,026,023 + OKGIIK_09330 0.80 -0.6
2,026,023 + OKGIIK_09330 0.80 -0.7
2,026,023 + OKGIIK_09330 0.80 -0.3
2,026,023 + OKGIIK_09330 0.80 -1.0
2,026,023 + OKGIIK_09330 0.80 -2.1
2,026,023 + OKGIIK_09330 0.80 -1.1
2,026,023 + OKGIIK_09330 0.80 -2.3
2,026,023 + OKGIIK_09330 0.80 -1.1
2,026,023 + OKGIIK_09330 0.80 -1.5
2,026,023 + OKGIIK_09330 0.80 -1.1
2,026,023 + OKGIIK_09330 0.80 -0.1
2,026,023 + OKGIIK_09330 0.80 -1.2
2,026,023 + OKGIIK_09330 0.80 +1.1
2,026,024 - OKGIIK_09330 0.80 -0.1
2,026,024 - OKGIIK_09330 0.80 -0.8
2,026,024 - OKGIIK_09330 0.80 +0.5
2,026,024 - OKGIIK_09330 0.80 -2.9
2,026,024 - OKGIIK_09330 0.80 -0.5
2,026,024 - OKGIIK_09330 0.80 +1.5
2,026,024 - OKGIIK_09330 0.80 -0.8
2,026,024 - OKGIIK_09330 0.80 +0.5
2,026,024 - OKGIIK_09330 0.80 -0.1
2,026,024 - OKGIIK_09330 0.80 -1.5
2,026,024 - OKGIIK_09330 0.80 -1.5
2,026,024 - OKGIIK_09330 0.80 -1.1
2,026,110 + -0.9
2,026,110 + -2.0
2,026,110 + +1.5
2,026,111 - -1.8
2,026,111 - -2.7
2,026,111 - -1.1
2,026,111 - +0.5
2,026,183 + +2.1
2,026,183 + -1.8
2,026,183 + -0.1
2,026,183 + +1.5
2,026,183 + -1.1
2,026,184 - -1.7
2,026,184 - -0.8
2,026,184 - +1.5
2,026,184 - +1.5
2,026,243 + -1.5
2,026,243 + +0.5
2,026,243 + -2.7
2,026,243 + -0.5
2,026,243 + +0.2
2,026,244 - +2.8
2,026,244 - -0.2
2,026,244 - -0.1
2,026,244 - -0.1
2,026,244 - -2.4
2,026,244 - +0.5
2,026,244 - -0.8
2,026,323 + -0.1
2,026,323 + -0.2
2,026,323 + +1.5
2,026,323 + -0.5
2,026,324 - -0.1
2,026,324 - -1.0
2,026,324 - -3.0
2,026,324 - +1.9
2,026,324 - -1.7
2,026,324 - -0.7
2,026,324 - -1.9
2,026,324 - -0.8
2,026,324 - -1.3
2,026,324 - -1.5
2,026,407 + -0.4
2,026,407 + -3.4
2,026,407 + -1.9
2,026,408 - +1.5
2,026,408 - -3.0
2,026,408 - -0.5
2,026,408 - -1.2
2,026,408 - -1.6
2,026,408 - -1.5

Or see this region's nucleotide sequence