Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_07660

Experiment: R2A_PIPES with Cobalt chloride 512 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntccoN and ccoO are separated by 127 nucleotidesccoO and OKGIIK_07665 overlap by 4 nucleotidesOKGIIK_07665 and ccoP overlap by 4 nucleotides OKGIIK_07655: ccoN - cytochrome-c oxidase, cbb3-type subunit I, at 1,693,313 to 1,694,779 ccoN OKGIIK_07660: ccoO - cytochrome-c oxidase, cbb3-type subunit II, at 1,694,907 to 1,695,557 ccoO OKGIIK_07665: OKGIIK_07665 - Cytochrome-c oxidase, at 1,695,554 to 1,695,727 _07665 OKGIIK_07670: ccoP - cytochrome-c oxidase, cbb3-type subunit III, at 1,695,724 to 1,696,635 ccoP Position (kb) 1694 1695 1696Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1693.919 kb on + strand, within ccoNat 1693.919 kb on + strand, within ccoNat 1693.973 kb on + strand, within ccoNat 1693.973 kb on + strand, within ccoNat 1693.973 kb on + strand, within ccoNat 1693.973 kb on + strand, within ccoNat 1693.976 kb on + strand, within ccoNat 1693.976 kb on + strand, within ccoNat 1693.976 kb on + strand, within ccoNat 1693.977 kb on - strand, within ccoNat 1693.977 kb on - strand, within ccoNat 1693.977 kb on - strand, within ccoNat 1694.015 kb on + strand, within ccoNat 1694.057 kb on + strand, within ccoNat 1694.057 kb on + strand, within ccoNat 1694.057 kb on + strand, within ccoNat 1694.058 kb on - strand, within ccoNat 1694.087 kb on + strand, within ccoNat 1694.087 kb on + strand, within ccoNat 1694.087 kb on + strand, within ccoNat 1694.088 kb on - strand, within ccoNat 1694.319 kb on - strand, within ccoNat 1694.319 kb on - strand, within ccoNat 1694.393 kb on + strand, within ccoNat 1694.394 kb on - strand, within ccoNat 1694.394 kb on - strand, within ccoNat 1694.447 kb on - strand, within ccoNat 1694.567 kb on + strand, within ccoNat 1694.568 kb on - strand, within ccoNat 1694.894 kb on + strandat 1694.894 kb on + strandat 1694.894 kb on + strandat 1694.894 kb on + strandat 1694.894 kb on + strandat 1694.894 kb on + strandat 1694.894 kb on + strandat 1694.894 kb on + strandat 1694.894 kb on + strandat 1694.894 kb on + strandat 1694.895 kb on - strandat 1694.895 kb on - strandat 1694.913 kb on + strandat 1694.914 kb on - strandat 1694.914 kb on - strandat 1694.914 kb on - strandat 1695.057 kb on + strand, within ccoOat 1695.058 kb on - strand, within ccoOat 1695.058 kb on - strand, within ccoOat 1695.090 kb on + strand, within ccoOat 1695.091 kb on - strand, within ccoOat 1695.091 kb on - strand, within ccoOat 1695.091 kb on - strand, within ccoOat 1695.091 kb on - strand, within ccoOat 1695.091 kb on - strand, within ccoOat 1695.091 kb on - strand, within ccoOat 1695.091 kb on - strand, within ccoOat 1695.108 kb on + strand, within ccoOat 1695.192 kb on + strand, within ccoOat 1695.258 kb on + strand, within ccoOat 1695.644 kb on + strand, within OKGIIK_07665at 1695.645 kb on - strand, within OKGIIK_07665at 1695.793 kb on + strandat 1695.794 kb on - strandat 1695.794 kb on - strandat 1695.794 kb on - strandat 1696.072 kb on + strand, within ccoPat 1696.073 kb on - strand, within ccoPat 1696.219 kb on + strand, within ccoPat 1696.327 kb on + strand, within ccoPat 1696.327 kb on + strand, within ccoPat 1696.328 kb on - strand, within ccoPat 1696.328 kb on - strand, within ccoPat 1696.469 kb on + strand, within ccoPat 1696.469 kb on + strand, within ccoPat 1696.469 kb on + strand, within ccoPat 1696.469 kb on + strand, within ccoPat 1696.469 kb on + strand, within ccoPat 1696.469 kb on + strand, within ccoPat 1696.469 kb on + strand, within ccoPat 1696.469 kb on + strand, within ccoPat 1696.470 kb on - strand, within ccoPat 1696.470 kb on - strand, within ccoPat 1696.470 kb on - strand, within ccoPat 1696.470 kb on - strand, within ccoPat 1696.470 kb on - strand, within ccoPat 1696.470 kb on - strand, within ccoPat 1696.470 kb on - strand, within ccoPat 1696.470 kb on - strand, within ccoPat 1696.470 kb on - strand, within ccoP

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cobalt chloride 512 uM
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1,693,919 + ccoN OKGIIK_07655 0.41 -1.4
1,693,919 + ccoN OKGIIK_07655 0.41 -1.4
1,693,973 + ccoN OKGIIK_07655 0.45 -1.7
1,693,973 + ccoN OKGIIK_07655 0.45 -0.8
1,693,973 + ccoN OKGIIK_07655 0.45 -0.0
1,693,973 + ccoN OKGIIK_07655 0.45 -1.8
1,693,976 + ccoN OKGIIK_07655 0.45 -0.1
1,693,976 + ccoN OKGIIK_07655 0.45 -1.3
1,693,976 + ccoN OKGIIK_07655 0.45 +0.6
1,693,977 - ccoN OKGIIK_07655 0.45 -1.1
1,693,977 - ccoN OKGIIK_07655 0.45 -0.9
1,693,977 - ccoN OKGIIK_07655 0.45 -1.4
1,694,015 + ccoN OKGIIK_07655 0.48 -2.0
1,694,057 + ccoN OKGIIK_07655 0.51 -2.5
1,694,057 + ccoN OKGIIK_07655 0.51 -1.3
1,694,057 + ccoN OKGIIK_07655 0.51 +0.6
1,694,058 - ccoN OKGIIK_07655 0.51 -1.4
1,694,087 + ccoN OKGIIK_07655 0.53 -0.8
1,694,087 + ccoN OKGIIK_07655 0.53 -1.3
1,694,087 + ccoN OKGIIK_07655 0.53 -0.4
1,694,088 - ccoN OKGIIK_07655 0.53 -1.3
1,694,319 - ccoN OKGIIK_07655 0.69 +2.1
1,694,319 - ccoN OKGIIK_07655 0.69 -0.4
1,694,393 + ccoN OKGIIK_07655 0.74 -2.0
1,694,394 - ccoN OKGIIK_07655 0.74 -0.2
1,694,394 - ccoN OKGIIK_07655 0.74 -1.3
1,694,447 - ccoN OKGIIK_07655 0.77 +1.0
1,694,567 + ccoN OKGIIK_07655 0.85 -0.8
1,694,568 - ccoN OKGIIK_07655 0.86 -0.0
1,694,894 + -0.8
1,694,894 + +0.2
1,694,894 + -1.4
1,694,894 + -0.8
1,694,894 + -1.5
1,694,894 + -1.0
1,694,894 + -1.4
1,694,894 + -1.4
1,694,894 + -1.6
1,694,894 + +0.6
1,694,895 - -0.4
1,694,895 - -0.0
1,694,913 + -2.5
1,694,914 - +0.6
1,694,914 - -2.1
1,694,914 - +1.6
1,695,057 + ccoO OKGIIK_07660 0.23 -0.3
1,695,058 - ccoO OKGIIK_07660 0.23 -3.0
1,695,058 - ccoO OKGIIK_07660 0.23 -1.6
1,695,090 + ccoO OKGIIK_07660 0.28 -1.4
1,695,091 - ccoO OKGIIK_07660 0.28 -0.9
1,695,091 - ccoO OKGIIK_07660 0.28 -2.4
1,695,091 - ccoO OKGIIK_07660 0.28 -1.4
1,695,091 - ccoO OKGIIK_07660 0.28 -1.5
1,695,091 - ccoO OKGIIK_07660 0.28 -2.0
1,695,091 - ccoO OKGIIK_07660 0.28 -1.5
1,695,091 - ccoO OKGIIK_07660 0.28 -1.3
1,695,108 + ccoO OKGIIK_07660 0.31 -2.0
1,695,192 + ccoO OKGIIK_07660 0.44 -0.6
1,695,258 + ccoO OKGIIK_07660 0.54 -1.4
1,695,644 + OKGIIK_07665 0.52 -1.9
1,695,645 - OKGIIK_07665 0.52 +0.6
1,695,793 + -1.5
1,695,794 - -1.7
1,695,794 - +1.1
1,695,794 - -1.0
1,696,072 + ccoP OKGIIK_07670 0.38 -0.6
1,696,073 - ccoP OKGIIK_07670 0.38 -2.8
1,696,219 + ccoP OKGIIK_07670 0.54 -0.0
1,696,327 + ccoP OKGIIK_07670 0.66 -1.0
1,696,327 + ccoP OKGIIK_07670 0.66 -0.3
1,696,328 - ccoP OKGIIK_07670 0.66 -1.6
1,696,328 - ccoP OKGIIK_07670 0.66 -0.6
1,696,469 + ccoP OKGIIK_07670 0.82 -0.5
1,696,469 + ccoP OKGIIK_07670 0.82 +1.5
1,696,469 + ccoP OKGIIK_07670 0.82 -1.6
1,696,469 + ccoP OKGIIK_07670 0.82 -1.8
1,696,469 + ccoP OKGIIK_07670 0.82 -1.8
1,696,469 + ccoP OKGIIK_07670 0.82 -2.4
1,696,469 + ccoP OKGIIK_07670 0.82 -1.8
1,696,469 + ccoP OKGIIK_07670 0.82 -0.5
1,696,470 - ccoP OKGIIK_07670 0.82 +0.8
1,696,470 - ccoP OKGIIK_07670 0.82 -3.0
1,696,470 - ccoP OKGIIK_07670 0.82 -1.3
1,696,470 - ccoP OKGIIK_07670 0.82 +0.5
1,696,470 - ccoP OKGIIK_07670 0.82 -1.9
1,696,470 - ccoP OKGIIK_07670 0.82 -0.6
1,696,470 - ccoP OKGIIK_07670 0.82 -1.4
1,696,470 - ccoP OKGIIK_07670 0.82 -1.5
1,696,470 - ccoP OKGIIK_07670 0.82 -1.6

Or see this region's nucleotide sequence