Experiment: R2A_PIPES with Cobalt chloride 512 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ccoN and ccoO are separated by 127 nucleotides ccoO and OKGIIK_07665 overlap by 4 nucleotides OKGIIK_07665 and ccoP overlap by 4 nucleotides
OKGIIK_07655: ccoN - cytochrome-c oxidase, cbb3-type subunit I, at 1,693,313 to 1,694,779
ccoN
OKGIIK_07660: ccoO - cytochrome-c oxidase, cbb3-type subunit II, at 1,694,907 to 1,695,557
ccoO
OKGIIK_07665: OKGIIK_07665 - Cytochrome-c oxidase, at 1,695,554 to 1,695,727
_07665
OKGIIK_07670: ccoP - cytochrome-c oxidase, cbb3-type subunit III, at 1,695,724 to 1,696,635
ccoP
Position (kb)
1694
1695
1696 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1693.919 kb on + strand, within ccoN at 1693.919 kb on + strand, within ccoN at 1693.973 kb on + strand, within ccoN at 1693.973 kb on + strand, within ccoN at 1693.973 kb on + strand, within ccoN at 1693.973 kb on + strand, within ccoN at 1693.976 kb on + strand, within ccoN at 1693.976 kb on + strand, within ccoN at 1693.976 kb on + strand, within ccoN at 1693.977 kb on - strand, within ccoN at 1693.977 kb on - strand, within ccoN at 1693.977 kb on - strand, within ccoN at 1694.015 kb on + strand, within ccoN at 1694.057 kb on + strand, within ccoN at 1694.057 kb on + strand, within ccoN at 1694.057 kb on + strand, within ccoN at 1694.058 kb on - strand, within ccoN at 1694.087 kb on + strand, within ccoN at 1694.087 kb on + strand, within ccoN at 1694.087 kb on + strand, within ccoN at 1694.088 kb on - strand, within ccoN at 1694.319 kb on - strand, within ccoN at 1694.319 kb on - strand, within ccoN at 1694.393 kb on + strand, within ccoN at 1694.394 kb on - strand, within ccoN at 1694.394 kb on - strand, within ccoN at 1694.447 kb on - strand, within ccoN at 1694.567 kb on + strand, within ccoN at 1694.568 kb on - strand, within ccoN at 1694.894 kb on + strand at 1694.894 kb on + strand at 1694.894 kb on + strand at 1694.894 kb on + strand at 1694.894 kb on + strand at 1694.894 kb on + strand at 1694.894 kb on + strand at 1694.894 kb on + strand at 1694.894 kb on + strand at 1694.894 kb on + strand at 1694.895 kb on - strand at 1694.895 kb on - strand at 1694.913 kb on + strand at 1694.914 kb on - strand at 1694.914 kb on - strand at 1694.914 kb on - strand at 1695.057 kb on + strand, within ccoO at 1695.058 kb on - strand, within ccoO at 1695.058 kb on - strand, within ccoO at 1695.090 kb on + strand, within ccoO at 1695.091 kb on - strand, within ccoO at 1695.091 kb on - strand, within ccoO at 1695.091 kb on - strand, within ccoO at 1695.091 kb on - strand, within ccoO at 1695.091 kb on - strand, within ccoO at 1695.091 kb on - strand, within ccoO at 1695.091 kb on - strand, within ccoO at 1695.108 kb on + strand, within ccoO at 1695.192 kb on + strand, within ccoO at 1695.258 kb on + strand, within ccoO at 1695.644 kb on + strand, within OKGIIK_07665 at 1695.645 kb on - strand, within OKGIIK_07665 at 1695.793 kb on + strand at 1695.794 kb on - strand at 1695.794 kb on - strand at 1695.794 kb on - strand at 1696.072 kb on + strand, within ccoP at 1696.073 kb on - strand, within ccoP at 1696.219 kb on + strand, within ccoP at 1696.327 kb on + strand, within ccoP at 1696.327 kb on + strand, within ccoP at 1696.328 kb on - strand, within ccoP at 1696.328 kb on - strand, within ccoP at 1696.469 kb on + strand, within ccoP at 1696.469 kb on + strand, within ccoP at 1696.469 kb on + strand, within ccoP at 1696.469 kb on + strand, within ccoP at 1696.469 kb on + strand, within ccoP at 1696.469 kb on + strand, within ccoP at 1696.469 kb on + strand, within ccoP at 1696.469 kb on + strand, within ccoP at 1696.470 kb on - strand, within ccoP at 1696.470 kb on - strand, within ccoP at 1696.470 kb on - strand, within ccoP at 1696.470 kb on - strand, within ccoP at 1696.470 kb on - strand, within ccoP at 1696.470 kb on - strand, within ccoP at 1696.470 kb on - strand, within ccoP at 1696.470 kb on - strand, within ccoP at 1696.470 kb on - strand, within ccoP
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Cobalt chloride 512 uM remove 1,693,919 + ccoN OKGIIK_07655 0.41 -1.4 1,693,919 + ccoN OKGIIK_07655 0.41 -1.4 1,693,973 + ccoN OKGIIK_07655 0.45 -1.7 1,693,973 + ccoN OKGIIK_07655 0.45 -0.8 1,693,973 + ccoN OKGIIK_07655 0.45 -0.0 1,693,973 + ccoN OKGIIK_07655 0.45 -1.8 1,693,976 + ccoN OKGIIK_07655 0.45 -0.1 1,693,976 + ccoN OKGIIK_07655 0.45 -1.3 1,693,976 + ccoN OKGIIK_07655 0.45 +0.6 1,693,977 - ccoN OKGIIK_07655 0.45 -1.1 1,693,977 - ccoN OKGIIK_07655 0.45 -0.9 1,693,977 - ccoN OKGIIK_07655 0.45 -1.4 1,694,015 + ccoN OKGIIK_07655 0.48 -2.0 1,694,057 + ccoN OKGIIK_07655 0.51 -2.5 1,694,057 + ccoN OKGIIK_07655 0.51 -1.3 1,694,057 + ccoN OKGIIK_07655 0.51 +0.6 1,694,058 - ccoN OKGIIK_07655 0.51 -1.4 1,694,087 + ccoN OKGIIK_07655 0.53 -0.8 1,694,087 + ccoN OKGIIK_07655 0.53 -1.3 1,694,087 + ccoN OKGIIK_07655 0.53 -0.4 1,694,088 - ccoN OKGIIK_07655 0.53 -1.3 1,694,319 - ccoN OKGIIK_07655 0.69 +2.1 1,694,319 - ccoN OKGIIK_07655 0.69 -0.4 1,694,393 + ccoN OKGIIK_07655 0.74 -2.0 1,694,394 - ccoN OKGIIK_07655 0.74 -0.2 1,694,394 - ccoN OKGIIK_07655 0.74 -1.3 1,694,447 - ccoN OKGIIK_07655 0.77 +1.0 1,694,567 + ccoN OKGIIK_07655 0.85 -0.8 1,694,568 - ccoN OKGIIK_07655 0.86 -0.0 1,694,894 + -0.8 1,694,894 + +0.2 1,694,894 + -1.4 1,694,894 + -0.8 1,694,894 + -1.5 1,694,894 + -1.0 1,694,894 + -1.4 1,694,894 + -1.4 1,694,894 + -1.6 1,694,894 + +0.6 1,694,895 - -0.4 1,694,895 - -0.0 1,694,913 + -2.5 1,694,914 - +0.6 1,694,914 - -2.1 1,694,914 - +1.6 1,695,057 + ccoO OKGIIK_07660 0.23 -0.3 1,695,058 - ccoO OKGIIK_07660 0.23 -3.0 1,695,058 - ccoO OKGIIK_07660 0.23 -1.6 1,695,090 + ccoO OKGIIK_07660 0.28 -1.4 1,695,091 - ccoO OKGIIK_07660 0.28 -0.9 1,695,091 - ccoO OKGIIK_07660 0.28 -2.4 1,695,091 - ccoO OKGIIK_07660 0.28 -1.4 1,695,091 - ccoO OKGIIK_07660 0.28 -1.5 1,695,091 - ccoO OKGIIK_07660 0.28 -2.0 1,695,091 - ccoO OKGIIK_07660 0.28 -1.5 1,695,091 - ccoO OKGIIK_07660 0.28 -1.3 1,695,108 + ccoO OKGIIK_07660 0.31 -2.0 1,695,192 + ccoO OKGIIK_07660 0.44 -0.6 1,695,258 + ccoO OKGIIK_07660 0.54 -1.4 1,695,644 + OKGIIK_07665 0.52 -1.9 1,695,645 - OKGIIK_07665 0.52 +0.6 1,695,793 + -1.5 1,695,794 - -1.7 1,695,794 - +1.1 1,695,794 - -1.0 1,696,072 + ccoP OKGIIK_07670 0.38 -0.6 1,696,073 - ccoP OKGIIK_07670 0.38 -2.8 1,696,219 + ccoP OKGIIK_07670 0.54 -0.0 1,696,327 + ccoP OKGIIK_07670 0.66 -1.0 1,696,327 + ccoP OKGIIK_07670 0.66 -0.3 1,696,328 - ccoP OKGIIK_07670 0.66 -1.6 1,696,328 - ccoP OKGIIK_07670 0.66 -0.6 1,696,469 + ccoP OKGIIK_07670 0.82 -0.5 1,696,469 + ccoP OKGIIK_07670 0.82 +1.5 1,696,469 + ccoP OKGIIK_07670 0.82 -1.6 1,696,469 + ccoP OKGIIK_07670 0.82 -1.8 1,696,469 + ccoP OKGIIK_07670 0.82 -1.8 1,696,469 + ccoP OKGIIK_07670 0.82 -2.4 1,696,469 + ccoP OKGIIK_07670 0.82 -1.8 1,696,469 + ccoP OKGIIK_07670 0.82 -0.5 1,696,470 - ccoP OKGIIK_07670 0.82 +0.8 1,696,470 - ccoP OKGIIK_07670 0.82 -3.0 1,696,470 - ccoP OKGIIK_07670 0.82 -1.3 1,696,470 - ccoP OKGIIK_07670 0.82 +0.5 1,696,470 - ccoP OKGIIK_07670 0.82 -1.9 1,696,470 - ccoP OKGIIK_07670 0.82 -0.6 1,696,470 - ccoP OKGIIK_07670 0.82 -1.4 1,696,470 - ccoP OKGIIK_07670 0.82 -1.5 1,696,470 - ccoP OKGIIK_07670 0.82 -1.6
Or see this region's nucleotide sequence