Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_06920

Experiment: R2A_PIPES with Cobalt chloride 512 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpheA and aroA overlap by 4 nucleotidesaroA and kdsB are separated by 53 nucleotideskdsB and uvrC are separated by 39 nucleotides OKGIIK_06915: pheA - prephenate dehydratase, at 1,536,314 to 1,537,402 pheA OKGIIK_06920: aroA - 3-phosphoshikimate 1-carboxyvinyltransferase, at 1,537,399 to 1,538,709 aroA OKGIIK_06925: kdsB - 3-deoxy-manno-octulosonate cytidylyltransferase, at 1,538,763 to 1,539,542 kdsB OKGIIK_06930: uvrC - excinuclease ABC subunit UvrC, at 1,539,582 to 1,541,408 uvrC Position (kb) 1537 1538 1539Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1536.458 kb on + strand, within pheAat 1536.458 kb on + strand, within pheAat 1536.458 kb on + strand, within pheAat 1536.458 kb on + strand, within pheAat 1536.458 kb on + strand, within pheAat 1536.458 kb on + strand, within pheAat 1536.458 kb on + strand, within pheAat 1536.458 kb on + strand, within pheAat 1536.458 kb on + strand, within pheAat 1536.459 kb on - strand, within pheAat 1536.696 kb on + strand, within pheAat 1536.696 kb on + strand, within pheAat 1536.696 kb on + strand, within pheAat 1536.696 kb on + strand, within pheAat 1536.696 kb on + strand, within pheAat 1536.697 kb on - strand, within pheAat 1536.697 kb on - strand, within pheAat 1536.697 kb on - strand, within pheAat 1536.697 kb on - strand, within pheAat 1536.697 kb on - strand, within pheAat 1536.697 kb on - strand, within pheAat 1536.805 kb on + strand, within pheAat 1536.805 kb on + strand, within pheAat 1536.805 kb on + strand, within pheAat 1536.805 kb on + strand, within pheAat 1536.805 kb on + strand, within pheAat 1536.805 kb on + strand, within pheAat 1536.805 kb on + strand, within pheAat 1536.805 kb on + strand, within pheAat 1536.805 kb on + strand, within pheAat 1536.806 kb on - strand, within pheAat 1536.806 kb on - strand, within pheAat 1536.806 kb on - strand, within pheAat 1536.888 kb on - strand, within pheAat 1537.046 kb on + strand, within pheAat 1537.193 kb on + strand, within pheAat 1537.193 kb on + strand, within pheAat 1537.193 kb on + strand, within pheAat 1537.193 kb on + strand, within pheAat 1537.193 kb on + strand, within pheAat 1537.193 kb on + strand, within pheAat 1537.220 kb on + strand, within pheAat 1537.277 kb on + strand, within pheAat 1537.278 kb on - strand, within pheAat 1537.278 kb on - strand, within pheAat 1537.383 kb on - strandat 1537.945 kb on + strand, within aroAat 1537.996 kb on - strand, within aroAat 1538.306 kb on + strand, within aroAat 1538.307 kb on - strand, within aroAat 1538.307 kb on - strand, within aroAat 1538.307 kb on - strand, within aroAat 1538.718 kb on + strandat 1538.718 kb on + strandat 1538.719 kb on - strandat 1538.733 kb on + strandat 1538.733 kb on + strandat 1538.733 kb on + strandat 1538.734 kb on - strandat 1538.734 kb on - strandat 1538.734 kb on - strandat 1538.734 kb on - strandat 1539.570 kb on + strandat 1539.570 kb on + strandat 1539.570 kb on + strandat 1539.571 kb on - strandat 1539.571 kb on - strandat 1539.571 kb on - strandat 1539.654 kb on + strandat 1539.654 kb on + strandat 1539.654 kb on + strandat 1539.655 kb on - strandat 1539.687 kb on + strandat 1539.687 kb on + strandat 1539.687 kb on + strandat 1539.687 kb on + strandat 1539.688 kb on - strandat 1539.688 kb on - strandat 1539.688 kb on - strandat 1539.688 kb on - strandat 1539.688 kb on - strandat 1539.688 kb on - strandat 1539.688 kb on - strandat 1539.688 kb on - strandat 1539.688 kb on - strandat 1539.688 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cobalt chloride 512 uM
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1,536,458 + pheA OKGIIK_06915 0.13 -0.5
1,536,458 + pheA OKGIIK_06915 0.13 -1.9
1,536,458 + pheA OKGIIK_06915 0.13 -0.0
1,536,458 + pheA OKGIIK_06915 0.13 -0.0
1,536,458 + pheA OKGIIK_06915 0.13 -1.3
1,536,458 + pheA OKGIIK_06915 0.13 -0.8
1,536,458 + pheA OKGIIK_06915 0.13 -0.2
1,536,458 + pheA OKGIIK_06915 0.13 -0.5
1,536,458 + pheA OKGIIK_06915 0.13 -1.8
1,536,459 - pheA OKGIIK_06915 0.13 -2.5
1,536,696 + pheA OKGIIK_06915 0.35 -2.2
1,536,696 + pheA OKGIIK_06915 0.35 -1.3
1,536,696 + pheA OKGIIK_06915 0.35 -1.0
1,536,696 + pheA OKGIIK_06915 0.35 -1.9
1,536,696 + pheA OKGIIK_06915 0.35 -0.8
1,536,697 - pheA OKGIIK_06915 0.35 -0.8
1,536,697 - pheA OKGIIK_06915 0.35 -0.0
1,536,697 - pheA OKGIIK_06915 0.35 -1.3
1,536,697 - pheA OKGIIK_06915 0.35 -0.8
1,536,697 - pheA OKGIIK_06915 0.35 +2.1
1,536,697 - pheA OKGIIK_06915 0.35 +1.0
1,536,805 + pheA OKGIIK_06915 0.45 -0.6
1,536,805 + pheA OKGIIK_06915 0.45 -0.0
1,536,805 + pheA OKGIIK_06915 0.45 +1.0
1,536,805 + pheA OKGIIK_06915 0.45 +0.3
1,536,805 + pheA OKGIIK_06915 0.45 +0.2
1,536,805 + pheA OKGIIK_06915 0.45 -1.4
1,536,805 + pheA OKGIIK_06915 0.45 -2.2
1,536,805 + pheA OKGIIK_06915 0.45 -0.5
1,536,805 + pheA OKGIIK_06915 0.45 -1.3
1,536,806 - pheA OKGIIK_06915 0.45 -1.6
1,536,806 - pheA OKGIIK_06915 0.45 -0.0
1,536,806 - pheA OKGIIK_06915 0.45 -1.6
1,536,888 - pheA OKGIIK_06915 0.53 -1.0
1,537,046 + pheA OKGIIK_06915 0.67 -2.2
1,537,193 + pheA OKGIIK_06915 0.81 -2.7
1,537,193 + pheA OKGIIK_06915 0.81 -1.0
1,537,193 + pheA OKGIIK_06915 0.81 -0.8
1,537,193 + pheA OKGIIK_06915 0.81 +0.7
1,537,193 + pheA OKGIIK_06915 0.81 -0.5
1,537,193 + pheA OKGIIK_06915 0.81 -1.2
1,537,220 + pheA OKGIIK_06915 0.83 -0.8
1,537,277 + pheA OKGIIK_06915 0.88 -1.4
1,537,278 - pheA OKGIIK_06915 0.89 -1.0
1,537,278 - pheA OKGIIK_06915 0.89 -0.8
1,537,383 - -3.0
1,537,945 + aroA OKGIIK_06920 0.42 -2.5
1,537,996 - aroA OKGIIK_06920 0.46 +1.5
1,538,306 + aroA OKGIIK_06920 0.69 -1.5
1,538,307 - aroA OKGIIK_06920 0.69 -1.5
1,538,307 - aroA OKGIIK_06920 0.69 -1.8
1,538,307 - aroA OKGIIK_06920 0.69 +0.5
1,538,718 + -1.8
1,538,718 + -0.2
1,538,719 - -0.5
1,538,733 + -0.5
1,538,733 + +0.5
1,538,733 + +0.1
1,538,734 - +1.5
1,538,734 - +0.2
1,538,734 - -1.5
1,538,734 - -0.5
1,539,570 + -1.2
1,539,570 + -0.5
1,539,570 + -0.1
1,539,571 - -0.5
1,539,571 - +1.0
1,539,571 - -0.1
1,539,654 + -0.1
1,539,654 + -2.1
1,539,654 + -1.3
1,539,655 - -1.3
1,539,687 + -0.8
1,539,687 + -2.2
1,539,687 + -2.9
1,539,687 + -0.1
1,539,688 - -1.5
1,539,688 - -1.9
1,539,688 - +0.0
1,539,688 - -1.9
1,539,688 - -1.1
1,539,688 - -1.5
1,539,688 - -2.6
1,539,688 - -2.5
1,539,688 - -2.4
1,539,688 - +0.5

Or see this region's nucleotide sequence