Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_05840

Experiment: R2A_PIPES with Cobalt chloride 512 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnuoN and fMet_trna are separated by 84 nucleotidesfMet_trna and rimP are separated by 197 nucleotidesrimP and nusA are separated by 173 nucleotides OKGIIK_05830: nuoN - NADH-quinone oxidoreductase subunit NuoN, at 1,276,913 to 1,278,367 nuoN OKGIIK_05835: fMet_trna - tRNA-fMet, at 1,278,452 to 1,278,528 _trna OKGIIK_05840: rimP - ribosome maturation protein RimP, at 1,278,726 to 1,279,268 rimP OKGIIK_05845: nusA - transcription termination/antitermination protein NusA, at 1,279,442 to 1,280,947 nusA Position (kb) 1278 1279 1280Strain fitness (log2 ratio) -2 -1 0 1at 1278.656 kb on + strandat 1278.656 kb on + strandat 1278.721 kb on + strandat 1278.721 kb on + strandat 1278.731 kb on + strandat 1278.731 kb on + strandat 1278.731 kb on + strandat 1278.824 kb on + strand, within rimPat 1278.963 kb on + strand, within rimPat 1278.963 kb on + strand, within rimPat 1278.963 kb on + strand, within rimPat 1278.963 kb on + strand, within rimPat 1278.963 kb on + strand, within rimPat 1278.963 kb on + strand, within rimPat 1279.298 kb on + strandat 1279.298 kb on + strandat 1279.298 kb on + strandat 1279.298 kb on + strandat 1279.298 kb on + strandat 1279.298 kb on + strandat 1279.298 kb on + strandat 1279.298 kb on + strandat 1279.402 kb on + strandat 1279.402 kb on + strandat 1279.402 kb on + strandat 1279.427 kb on + strandat 1279.427 kb on + strandat 1279.427 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cobalt chloride 512 uM
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1,278,656 + -1.4
1,278,656 + -0.0
1,278,721 + -1.3
1,278,721 + +0.4
1,278,731 + -1.6
1,278,731 + -1.6
1,278,731 + -1.8
1,278,824 + rimP OKGIIK_05840 0.18 -1.6
1,278,963 + rimP OKGIIK_05840 0.44 -1.3
1,278,963 + rimP OKGIIK_05840 0.44 -1.8
1,278,963 + rimP OKGIIK_05840 0.44 -1.9
1,278,963 + rimP OKGIIK_05840 0.44 -0.4
1,278,963 + rimP OKGIIK_05840 0.44 -1.9
1,278,963 + rimP OKGIIK_05840 0.44 -0.4
1,279,298 + -1.6
1,279,298 + -0.8
1,279,298 + +0.1
1,279,298 + +1.1
1,279,298 + -0.6
1,279,298 + -0.3
1,279,298 + -1.3
1,279,298 + -1.4
1,279,402 + -1.7
1,279,402 + -0.4
1,279,402 + -0.9
1,279,427 + +1.6
1,279,427 + -0.5
1,279,427 + -0.8

Or see this region's nucleotide sequence