Experiment: R2A_PIPES with Cobalt chloride 512 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_02955 and ybeY are separated by 147 nucleotides ybeY and phoH overlap by 4 nucleotides phoH and OKGIIK_02970 are separated by 54 nucleotides OKGIIK_02970 and OKGIIK_02975 overlap by 4 nucleotides
OKGIIK_02955: OKGIIK_02955 - CBS domain-containing protein, at 673,972 to 674,745
_02955
OKGIIK_02960: ybeY - rRNA maturation RNase YbeY, at 674,893 to 675,354
ybeY
OKGIIK_02965: phoH - Phosphate starvation-inducible protein PhoH, putative ATPase, at 675,351 to 676,370
phoH
OKGIIK_02970: OKGIIK_02970 - TetR family transcriptional regulator, at 676,425 to 677,105
_02970
OKGIIK_02975: OKGIIK_02975 - Hemolysin secretion protein D, at 677,102 to 678,073
_02975
Position (kb) 675
676
677 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3
4 at 674.448 kb on - strand, within OKGIIK_02955 at 674.448 kb on - strand, within OKGIIK_02955 at 674.448 kb on - strand, within OKGIIK_02955 at 674.448 kb on - strand, within OKGIIK_02955 at 674.448 kb on - strand, within OKGIIK_02955 at 674.448 kb on - strand, within OKGIIK_02955 at 674.448 kb on - strand, within OKGIIK_02955 at 674.448 kb on - strand, within OKGIIK_02955 at 674.448 kb on - strand, within OKGIIK_02955 at 674.448 kb on - strand, within OKGIIK_02955 at 674.791 kb on - strand at 674.791 kb on - strand at 674.791 kb on - strand at 674.791 kb on - strand at 674.791 kb on - strand at 674.813 kb on - strand at 674.813 kb on - strand at 674.813 kb on - strand at 674.813 kb on - strand at 674.813 kb on - strand at 674.813 kb on - strand at 674.813 kb on - strand at 674.856 kb on - strand at 674.894 kb on + strand at 674.895 kb on - strand at 675.388 kb on + strand at 675.388 kb on + strand at 675.388 kb on + strand at 675.388 kb on + strand at 675.388 kb on + strand at 675.389 kb on - strand at 675.389 kb on - strand at 675.510 kb on - strand, within phoH at 675.510 kb on - strand, within phoH at 675.510 kb on - strand, within phoH at 675.635 kb on - strand, within phoH at 675.635 kb on - strand, within phoH at 675.635 kb on - strand, within phoH at 675.635 kb on - strand, within phoH at 675.635 kb on - strand, within phoH at 675.635 kb on - strand, within phoH at 675.635 kb on - strand, within phoH at 675.664 kb on + strand, within phoH at 675.664 kb on + strand, within phoH at 675.664 kb on + strand, within phoH at 675.664 kb on + strand, within phoH at 675.664 kb on + strand, within phoH at 675.664 kb on + strand, within phoH at 675.664 kb on + strand, within phoH at 675.664 kb on + strand, within phoH at 675.664 kb on + strand, within phoH at 675.664 kb on + strand, within phoH at 675.664 kb on + strand, within phoH at 675.664 kb on + strand, within phoH at 675.664 kb on + strand, within phoH at 675.664 kb on + strand, within phoH at 675.665 kb on - strand, within phoH at 675.665 kb on - strand, within phoH at 675.665 kb on - strand, within phoH at 675.665 kb on - strand, within phoH at 675.665 kb on - strand, within phoH at 675.665 kb on - strand, within phoH at 675.665 kb on - strand, within phoH at 675.665 kb on - strand, within phoH at 675.665 kb on - strand, within phoH at 675.736 kb on + strand, within phoH at 675.736 kb on + strand, within phoH at 675.736 kb on + strand, within phoH at 675.737 kb on - strand, within phoH at 675.737 kb on - strand, within phoH at 675.737 kb on - strand, within phoH at 675.737 kb on - strand, within phoH at 675.737 kb on - strand, within phoH at 675.737 kb on - strand, within phoH at 675.749 kb on - strand, within phoH at 675.749 kb on - strand, within phoH at 675.764 kb on - strand, within phoH at 675.764 kb on - strand, within phoH at 675.764 kb on - strand, within phoH at 675.898 kb on + strand, within phoH at 675.898 kb on + strand, within phoH at 675.898 kb on + strand, within phoH at 675.898 kb on + strand, within phoH at 675.898 kb on + strand, within phoH at 675.899 kb on - strand, within phoH at 675.899 kb on - strand, within phoH at 675.899 kb on - strand, within phoH at 675.899 kb on - strand, within phoH at 675.899 kb on - strand, within phoH at 675.899 kb on - strand, within phoH at 675.899 kb on - strand, within phoH at 675.899 kb on - strand, within phoH at 675.899 kb on - strand, within phoH at 675.899 kb on - strand, within phoH at 675.899 kb on - strand, within phoH at 675.899 kb on - strand, within phoH at 675.899 kb on - strand, within phoH at 675.899 kb on - strand, within phoH at 675.899 kb on - strand, within phoH at 675.899 kb on - strand, within phoH at 675.899 kb on - strand, within phoH at 675.899 kb on - strand, within phoH at 675.899 kb on - strand, within phoH at 675.899 kb on - strand, within phoH at 675.899 kb on - strand, within phoH at 675.899 kb on - strand, within phoH at 675.965 kb on - strand, within phoH at 675.965 kb on - strand, within phoH at 675.965 kb on - strand, within phoH at 676.129 kb on + strand, within phoH at 676.130 kb on - strand, within phoH at 676.130 kb on - strand, within phoH at 676.130 kb on - strand, within phoH at 676.182 kb on + strand, within phoH at 676.182 kb on + strand, within phoH at 676.182 kb on + strand, within phoH at 676.183 kb on - strand, within phoH at 676.183 kb on - strand, within phoH at 676.331 kb on + strand at 676.332 kb on - strand at 676.332 kb on - strand at 676.345 kb on + strand at 676.614 kb on + strand, within OKGIIK_02970 at 676.614 kb on + strand, within OKGIIK_02970 at 676.614 kb on + strand, within OKGIIK_02970 at 676.614 kb on + strand, within OKGIIK_02970 at 676.614 kb on + strand, within OKGIIK_02970 at 676.614 kb on + strand, within OKGIIK_02970 at 676.614 kb on + strand, within OKGIIK_02970 at 676.614 kb on + strand, within OKGIIK_02970 at 676.614 kb on + strand, within OKGIIK_02970 at 676.614 kb on + strand, within OKGIIK_02970 at 676.614 kb on + strand, within OKGIIK_02970 at 676.614 kb on + strand, within OKGIIK_02970 at 676.615 kb on - strand, within OKGIIK_02970 at 676.615 kb on - strand, within OKGIIK_02970 at 676.615 kb on - strand, within OKGIIK_02970 at 676.615 kb on - strand, within OKGIIK_02970 at 676.615 kb on - strand, within OKGIIK_02970 at 676.615 kb on - strand, within OKGIIK_02970 at 676.615 kb on - strand, within OKGIIK_02970 at 676.615 kb on - strand, within OKGIIK_02970 at 676.615 kb on - strand, within OKGIIK_02970 at 676.615 kb on - strand, within OKGIIK_02970 at 676.615 kb on - strand, within OKGIIK_02970 at 676.615 kb on - strand, within OKGIIK_02970 at 676.615 kb on - strand, within OKGIIK_02970 at 676.617 kb on + strand, within OKGIIK_02970 at 676.617 kb on + strand, within OKGIIK_02970 at 676.617 kb on + strand, within OKGIIK_02970 at 676.617 kb on + strand, within OKGIIK_02970 at 676.617 kb on + strand, within OKGIIK_02970 at 676.617 kb on + strand, within OKGIIK_02970 at 676.617 kb on + strand, within OKGIIK_02970 at 676.617 kb on + strand, within OKGIIK_02970 at 676.617 kb on + strand, within OKGIIK_02970 at 676.617 kb on + strand, within OKGIIK_02970 at 676.617 kb on + strand, within OKGIIK_02970 at 676.617 kb on + strand, within OKGIIK_02970 at 676.617 kb on + strand, within OKGIIK_02970 at 676.617 kb on + strand, within OKGIIK_02970 at 676.617 kb on - strand, within OKGIIK_02970 at 676.618 kb on - strand, within OKGIIK_02970 at 676.618 kb on - strand, within OKGIIK_02970 at 676.618 kb on - strand, within OKGIIK_02970 at 676.618 kb on - strand, within OKGIIK_02970 at 676.618 kb on - strand, within OKGIIK_02970 at 676.618 kb on - strand, within OKGIIK_02970 at 676.618 kb on - strand, within OKGIIK_02970 at 676.618 kb on - strand, within OKGIIK_02970 at 676.618 kb on - strand, within OKGIIK_02970 at 676.618 kb on - strand, within OKGIIK_02970 at 676.618 kb on - strand, within OKGIIK_02970 at 676.618 kb on - strand, within OKGIIK_02970 at 676.618 kb on - strand, within OKGIIK_02970 at 676.618 kb on - strand, within OKGIIK_02970 at 676.618 kb on - strand, within OKGIIK_02970 at 676.642 kb on + strand, within OKGIIK_02970 at 676.642 kb on + strand, within OKGIIK_02970 at 676.642 kb on + strand, within OKGIIK_02970 at 676.642 kb on + strand, within OKGIIK_02970 at 676.642 kb on + strand, within OKGIIK_02970 at 676.642 kb on + strand, within OKGIIK_02970 at 676.642 kb on + strand, within OKGIIK_02970 at 676.642 kb on + strand, within OKGIIK_02970 at 677.048 kb on + strand at 677.048 kb on + strand at 677.048 kb on + strand at 677.048 kb on + strand at 677.048 kb on + strand at 677.048 kb on + strand at 677.048 kb on + strand at 677.048 kb on + strand at 677.048 kb on + strand at 677.048 kb on + strand at 677.048 kb on + strand at 677.048 kb on + strand at 677.048 kb on + strand at 677.048 kb on + strand at 677.048 kb on + strand at 677.048 kb on + strand at 677.048 kb on + strand at 677.048 kb on + strand at 677.048 kb on + strand at 677.048 kb on + strand at 677.048 kb on + strand at 677.048 kb on + strand at 677.048 kb on + strand at 677.048 kb on + strand at 677.048 kb on + strand at 677.048 kb on + strand at 677.048 kb on + strand at 677.048 kb on + strand at 677.048 kb on + strand at 677.048 kb on + strand at 677.048 kb on + strand at 677.048 kb on + strand at 677.049 kb on - strand at 677.049 kb on - strand at 677.049 kb on - strand at 677.049 kb on - strand at 677.049 kb on - strand at 677.049 kb on - strand at 677.049 kb on - strand at 677.049 kb on - strand at 677.049 kb on - strand at 677.049 kb on - strand at 677.049 kb on - strand at 677.049 kb on - strand at 677.049 kb on - strand at 677.049 kb on - strand at 677.049 kb on - strand at 677.049 kb on - strand at 677.049 kb on - strand at 677.049 kb on - strand at 677.049 kb on - strand at 677.049 kb on - strand at 677.049 kb on - strand at 677.049 kb on - strand at 677.049 kb on - strand at 677.049 kb on - strand at 677.049 kb on - strand at 677.049 kb on - strand at 677.049 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Cobalt chloride 512 uM remove 674,448 - OKGIIK_02955 0.61 +0.5 674,448 - OKGIIK_02955 0.61 -1.7 674,448 - OKGIIK_02955 0.61 +0.9 674,448 - OKGIIK_02955 0.61 -0.6 674,448 - OKGIIK_02955 0.61 -0.7 674,448 - OKGIIK_02955 0.61 +3.5 674,448 - OKGIIK_02955 0.61 -0.1 674,448 - OKGIIK_02955 0.61 -2.2 674,448 - OKGIIK_02955 0.61 -3.4 674,448 - OKGIIK_02955 0.61 -0.3 674,791 - -2.4 674,791 - -0.5 674,791 - -2.0 674,791 - -0.1 674,791 - -1.6 674,813 - -1.9 674,813 - -2.1 674,813 - -1.3 674,813 - -1.1 674,813 - -1.5 674,813 - +1.2 674,813 - -1.7 674,856 - -1.1 674,894 + +0.8 674,895 - -1.5 675,388 + -2.9 675,388 + +0.9 675,388 + +0.1 675,388 + -1.2 675,388 + -2.3 675,389 - +0.5 675,389 - -1.0 675,510 - phoH OKGIIK_02965 0.16 -1.5 675,510 - phoH OKGIIK_02965 0.16 +0.1 675,510 - phoH OKGIIK_02965 0.16 +0.5 675,635 - phoH OKGIIK_02965 0.28 -2.6 675,635 - phoH OKGIIK_02965 0.28 -2.5 675,635 - phoH OKGIIK_02965 0.28 -1.3 675,635 - phoH OKGIIK_02965 0.28 +1.5 675,635 - phoH OKGIIK_02965 0.28 -0.9 675,635 - phoH OKGIIK_02965 0.28 +0.9 675,635 - phoH OKGIIK_02965 0.28 -2.8 675,664 + phoH OKGIIK_02965 0.31 -1.3 675,664 + phoH OKGIIK_02965 0.31 -1.9 675,664 + phoH OKGIIK_02965 0.31 -4.3 675,664 + phoH OKGIIK_02965 0.31 -0.1 675,664 + phoH OKGIIK_02965 0.31 +0.5 675,664 + phoH OKGIIK_02965 0.31 -0.9 675,664 + phoH OKGIIK_02965 0.31 -1.5 675,664 + phoH OKGIIK_02965 0.31 +0.9 675,664 + phoH OKGIIK_02965 0.31 -0.9 675,664 + phoH OKGIIK_02965 0.31 -1.7 675,664 + phoH OKGIIK_02965 0.31 -1.4 675,664 + phoH OKGIIK_02965 0.31 +1.5 675,664 + phoH OKGIIK_02965 0.31 -2.6 675,664 + phoH OKGIIK_02965 0.31 -2.8 675,665 - phoH OKGIIK_02965 0.31 -0.1 675,665 - phoH OKGIIK_02965 0.31 -0.9 675,665 - phoH OKGIIK_02965 0.31 -0.1 675,665 - phoH OKGIIK_02965 0.31 -0.9 675,665 - phoH OKGIIK_02965 0.31 -0.5 675,665 - phoH OKGIIK_02965 0.31 -6.2 675,665 - phoH OKGIIK_02965 0.31 -3.0 675,665 - phoH OKGIIK_02965 0.31 -1.1 675,665 - phoH OKGIIK_02965 0.31 -0.3 675,736 + phoH OKGIIK_02965 0.38 -1.7 675,736 + phoH OKGIIK_02965 0.38 -1.3 675,736 + phoH OKGIIK_02965 0.38 -2.2 675,737 - phoH OKGIIK_02965 0.38 -1.6 675,737 - phoH OKGIIK_02965 0.38 +0.1 675,737 - phoH OKGIIK_02965 0.38 -0.9 675,737 - phoH OKGIIK_02965 0.38 -0.5 675,737 - phoH OKGIIK_02965 0.38 -2.7 675,737 - phoH OKGIIK_02965 0.38 -2.0 675,749 - phoH OKGIIK_02965 0.39 -3.0 675,749 - phoH OKGIIK_02965 0.39 -1.5 675,764 - phoH OKGIIK_02965 0.40 -1.9 675,764 - phoH OKGIIK_02965 0.40 +0.9 675,764 - phoH OKGIIK_02965 0.40 -1.3 675,898 + phoH OKGIIK_02965 0.54 -1.7 675,898 + phoH OKGIIK_02965 0.54 -0.9 675,898 + phoH OKGIIK_02965 0.54 +1.5 675,898 + phoH OKGIIK_02965 0.54 -2.1 675,898 + phoH OKGIIK_02965 0.54 -1.3 675,899 - phoH OKGIIK_02965 0.54 -3.4 675,899 - phoH OKGIIK_02965 0.54 -4.7 675,899 - phoH OKGIIK_02965 0.54 -0.5 675,899 - phoH OKGIIK_02965 0.54 -0.1 675,899 - phoH OKGIIK_02965 0.54 -1.1 675,899 - phoH OKGIIK_02965 0.54 +0.5 675,899 - phoH OKGIIK_02965 0.54 -0.9 675,899 - phoH OKGIIK_02965 0.54 -2.1 675,899 - phoH OKGIIK_02965 0.54 -1.2 675,899 - phoH OKGIIK_02965 0.54 -1.6 675,899 - phoH OKGIIK_02965 0.54 +0.2 675,899 - phoH OKGIIK_02965 0.54 +0.5 675,899 - phoH OKGIIK_02965 0.54 -1.0 675,899 - phoH OKGIIK_02965 0.54 -1.1 675,899 - phoH OKGIIK_02965 0.54 -0.1 675,899 - phoH OKGIIK_02965 0.54 -1.5 675,899 - phoH OKGIIK_02965 0.54 -2.1 675,899 - phoH OKGIIK_02965 0.54 +0.9 675,899 - phoH OKGIIK_02965 0.54 -1.4 675,899 - phoH OKGIIK_02965 0.54 +0.5 675,899 - phoH OKGIIK_02965 0.54 -2.2 675,899 - phoH OKGIIK_02965 0.54 -2.9 675,965 - phoH OKGIIK_02965 0.60 -1.1 675,965 - phoH OKGIIK_02965 0.60 -0.5 675,965 - phoH OKGIIK_02965 0.60 -3.2 676,129 + phoH OKGIIK_02965 0.76 -0.9 676,130 - phoH OKGIIK_02965 0.76 -1.5 676,130 - phoH OKGIIK_02965 0.76 -1.1 676,130 - phoH OKGIIK_02965 0.76 -0.9 676,182 + phoH OKGIIK_02965 0.81 -0.1 676,182 + phoH OKGIIK_02965 0.81 -0.7 676,182 + phoH OKGIIK_02965 0.81 -1.3 676,183 - phoH OKGIIK_02965 0.82 -0.5 676,183 - phoH OKGIIK_02965 0.82 -3.0 676,331 + -2.0 676,332 - -0.9 676,332 - -1.0 676,345 + +0.2 676,614 + OKGIIK_02970 0.28 -0.9 676,614 + OKGIIK_02970 0.28 -0.5 676,614 + OKGIIK_02970 0.28 -1.3 676,614 + OKGIIK_02970 0.28 -0.3 676,614 + OKGIIK_02970 0.28 -0.1 676,614 + OKGIIK_02970 0.28 -1.5 676,614 + OKGIIK_02970 0.28 -1.9 676,614 + OKGIIK_02970 0.28 -2.8 676,614 + OKGIIK_02970 0.28 -1.1 676,614 + OKGIIK_02970 0.28 +0.1 676,614 + OKGIIK_02970 0.28 -1.9 676,614 + OKGIIK_02970 0.28 -0.1 676,615 - OKGIIK_02970 0.28 -0.9 676,615 - OKGIIK_02970 0.28 -0.9 676,615 - OKGIIK_02970 0.28 +0.1 676,615 - OKGIIK_02970 0.28 -0.5 676,615 - OKGIIK_02970 0.28 -2.0 676,615 - OKGIIK_02970 0.28 +1.5 676,615 - OKGIIK_02970 0.28 -1.4 676,615 - OKGIIK_02970 0.28 -1.1 676,615 - OKGIIK_02970 0.28 -1.1 676,615 - OKGIIK_02970 0.28 -0.9 676,615 - OKGIIK_02970 0.28 -2.2 676,615 - OKGIIK_02970 0.28 -1.9 676,615 - OKGIIK_02970 0.28 -1.1 676,617 + OKGIIK_02970 0.28 +1.5 676,617 + OKGIIK_02970 0.28 +1.9 676,617 + OKGIIK_02970 0.28 -1.3 676,617 + OKGIIK_02970 0.28 -1.3 676,617 + OKGIIK_02970 0.28 +1.5 676,617 + OKGIIK_02970 0.28 +2.1 676,617 + OKGIIK_02970 0.28 -1.1 676,617 + OKGIIK_02970 0.28 -1.5 676,617 + OKGIIK_02970 0.28 -0.4 676,617 + OKGIIK_02970 0.28 -1.3 676,617 + OKGIIK_02970 0.28 -1.6 676,617 + OKGIIK_02970 0.28 +0.1 676,617 + OKGIIK_02970 0.28 -1.1 676,617 + OKGIIK_02970 0.28 -0.5 676,617 - OKGIIK_02970 0.28 -1.5 676,618 - OKGIIK_02970 0.28 -1.1 676,618 - OKGIIK_02970 0.28 -0.1 676,618 - OKGIIK_02970 0.28 -1.3 676,618 - OKGIIK_02970 0.28 -1.7 676,618 - OKGIIK_02970 0.28 -0.5 676,618 - OKGIIK_02970 0.28 +1.5 676,618 - OKGIIK_02970 0.28 -1.3 676,618 - OKGIIK_02970 0.28 -0.5 676,618 - OKGIIK_02970 0.28 +1.5 676,618 - OKGIIK_02970 0.28 +4.1 676,618 - OKGIIK_02970 0.28 -1.3 676,618 - OKGIIK_02970 0.28 -1.4 676,618 - OKGIIK_02970 0.28 -1.7 676,618 - OKGIIK_02970 0.28 -1.3 676,618 - OKGIIK_02970 0.28 -1.7 676,642 + OKGIIK_02970 0.32 -2.0 676,642 + OKGIIK_02970 0.32 +1.2 676,642 + OKGIIK_02970 0.32 +1.5 676,642 + OKGIIK_02970 0.32 -1.0 676,642 + OKGIIK_02970 0.32 -0.9 676,642 + OKGIIK_02970 0.32 -0.2 676,642 + OKGIIK_02970 0.32 +0.1 676,642 + OKGIIK_02970 0.32 -0.5 677,048 + -1.1 677,048 + -0.7 677,048 + +0.9 677,048 + +1.7 677,048 + -2.5 677,048 + -0.9 677,048 + -0.3 677,048 + -1.4 677,048 + -1.1 677,048 + -1.5 677,048 + +0.2 677,048 + -1.4 677,048 + -1.5 677,048 + -0.1 677,048 + +0.5 677,048 + -0.7 677,048 + -0.5 677,048 + -0.9 677,048 + -0.1 677,048 + -1.6 677,048 + -0.1 677,048 + -1.7 677,048 + -2.1 677,048 + -0.1 677,048 + -1.5 677,048 + -0.9 677,048 + -1.0 677,048 + +1.5 677,048 + +0.5 677,048 + +0.5 677,048 + +0.9 677,048 + -1.1 677,049 - -0.9 677,049 - -1.9 677,049 - -1.2 677,049 - -0.3 677,049 - -2.7 677,049 - -2.0 677,049 - -1.6 677,049 - -0.3 677,049 - +3.1 677,049 - -0.9 677,049 - -0.5 677,049 - -1.1 677,049 - +3.1 677,049 - -0.8 677,049 - -2.1 677,049 - -1.1 677,049 - -2.9 677,049 - -0.1 677,049 - -0.4 677,049 - +1.1 677,049 - +0.5 677,049 - -2.1 677,049 - -1.6 677,049 - +0.5 677,049 - -2.4 677,049 - +1.1 677,049 - -0.5
Or see this region's nucleotide sequence