Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_02870

Experiment: R2A_PIPES with Cobalt chloride 512 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmotD and OKGIIK_02860 are separated by 28 nucleotidesOKGIIK_02860 and OKGIIK_02865 overlap by 11 nucleotidesOKGIIK_02865 and OKGIIK_02870 are separated by 31 nucleotidesOKGIIK_02870 and OKGIIK_02875 overlap by 4 nucleotides OKGIIK_02855: motD - flagellar motor protein MotD, at 657,072 to 658,133 motD OKGIIK_02860: OKGIIK_02860 - Chemotaxis protein CheW, at 658,162 to 658,641 _02860 OKGIIK_02865: OKGIIK_02865 - DUF2802 domain-containing protein, at 658,631 to 658,984 _02865 OKGIIK_02870: OKGIIK_02870 - Flagellar biosynthesis protein, at 659,016 to 659,267 _02870 OKGIIK_02875: OKGIIK_02875 - Flg-hook domain-containing protein, at 659,264 to 660,406 _02875 Position (kb) 659 660Strain fitness (log2 ratio) -3 -2 -1 0 1at 658.234 kb on + strand, within OKGIIK_02860at 658.234 kb on + strand, within OKGIIK_02860at 658.234 kb on + strand, within OKGIIK_02860at 658.234 kb on + strand, within OKGIIK_02860at 658.234 kb on + strand, within OKGIIK_02860at 658.234 kb on + strand, within OKGIIK_02860at 658.234 kb on + strand, within OKGIIK_02860at 658.234 kb on + strand, within OKGIIK_02860at 658.235 kb on - strand, within OKGIIK_02860at 658.235 kb on - strand, within OKGIIK_02860at 658.235 kb on - strand, within OKGIIK_02860at 658.235 kb on - strand, within OKGIIK_02860at 658.454 kb on + strand, within OKGIIK_02860at 658.656 kb on + strandat 658.656 kb on + strandat 658.656 kb on + strandat 658.656 kb on + strandat 658.656 kb on + strandat 658.656 kb on + strandat 658.656 kb on + strandat 658.656 kb on + strandat 658.657 kb on - strandat 658.657 kb on - strandat 658.657 kb on - strandat 658.657 kb on - strandat 658.657 kb on - strandat 658.657 kb on - strandat 658.657 kb on - strandat 658.657 kb on - strandat 658.657 kb on - strandat 658.657 kb on - strandat 658.657 kb on - strandat 658.657 kb on - strandat 659.018 kb on - strandat 659.035 kb on + strandat 659.035 kb on - strandat 659.036 kb on - strandat 659.036 kb on - strandat 659.036 kb on - strandat 659.068 kb on + strand, within OKGIIK_02870at 659.068 kb on + strand, within OKGIIK_02870at 659.068 kb on + strand, within OKGIIK_02870at 659.069 kb on - strand, within OKGIIK_02870at 659.069 kb on - strand, within OKGIIK_02870at 659.069 kb on - strand, within OKGIIK_02870at 659.069 kb on - strand, within OKGIIK_02870at 659.069 kb on - strand, within OKGIIK_02870at 659.602 kb on - strand, within OKGIIK_02875at 659.777 kb on + strand, within OKGIIK_02875at 660.096 kb on + strand, within OKGIIK_02875at 660.236 kb on + strand, within OKGIIK_02875at 660.236 kb on + strand, within OKGIIK_02875at 660.236 kb on + strand, within OKGIIK_02875at 660.236 kb on + strand, within OKGIIK_02875at 660.236 kb on + strand, within OKGIIK_02875at 660.236 kb on + strand, within OKGIIK_02875at 660.236 kb on + strand, within OKGIIK_02875at 660.237 kb on - strand, within OKGIIK_02875at 660.237 kb on - strand, within OKGIIK_02875at 660.237 kb on - strand, within OKGIIK_02875at 660.237 kb on - strand, within OKGIIK_02875at 660.237 kb on - strand, within OKGIIK_02875

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cobalt chloride 512 uM
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658,234 + OKGIIK_02860 0.15 -1.3
658,234 + OKGIIK_02860 0.15 -0.1
658,234 + OKGIIK_02860 0.15 -1.2
658,234 + OKGIIK_02860 0.15 -2.7
658,234 + OKGIIK_02860 0.15 +0.3
658,234 + OKGIIK_02860 0.15 -0.5
658,234 + OKGIIK_02860 0.15 -0.1
658,234 + OKGIIK_02860 0.15 -0.8
658,235 - OKGIIK_02860 0.15 -1.8
658,235 - OKGIIK_02860 0.15 -0.8
658,235 - OKGIIK_02860 0.15 -1.2
658,235 - OKGIIK_02860 0.15 -0.4
658,454 + OKGIIK_02860 0.61 -2.0
658,656 + +0.2
658,656 + -0.5
658,656 + -0.5
658,656 + -1.0
658,656 + -0.8
658,656 + -3.6
658,656 + -1.7
658,656 + -0.8
658,657 - -1.8
658,657 - -1.3
658,657 - -0.8
658,657 - -1.3
658,657 - -1.3
658,657 - -1.3
658,657 - -0.4
658,657 - +0.9
658,657 - -1.8
658,657 - +0.5
658,657 - -1.6
658,657 - -1.1
659,018 - +0.9
659,035 + -0.2
659,035 - +0.1
659,036 - +0.5
659,036 - -1.9
659,036 - -0.8
659,068 + OKGIIK_02870 0.21 -1.1
659,068 + OKGIIK_02870 0.21 -3.4
659,068 + OKGIIK_02870 0.21 -2.1
659,069 - OKGIIK_02870 0.21 -1.7
659,069 - OKGIIK_02870 0.21 -0.1
659,069 - OKGIIK_02870 0.21 -2.1
659,069 - OKGIIK_02870 0.21 +0.5
659,069 - OKGIIK_02870 0.21 -2.3
659,602 - OKGIIK_02875 0.30 -1.5
659,777 + OKGIIK_02875 0.45 -0.5
660,096 + OKGIIK_02875 0.73 +1.5
660,236 + OKGIIK_02875 0.85 +0.8
660,236 + OKGIIK_02875 0.85 +0.9
660,236 + OKGIIK_02875 0.85 -1.1
660,236 + OKGIIK_02875 0.85 -2.6
660,236 + OKGIIK_02875 0.85 -0.8
660,236 + OKGIIK_02875 0.85 -1.4
660,236 + OKGIIK_02875 0.85 -0.5
660,237 - OKGIIK_02875 0.85 -1.3
660,237 - OKGIIK_02875 0.85 +0.5
660,237 - OKGIIK_02875 0.85 -0.8
660,237 - OKGIIK_02875 0.85 +0.7
660,237 - OKGIIK_02875 0.85 -2.2

Or see this region's nucleotide sequence