Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_01190

Experiment: R2A_PIPES with Cobalt chloride 512 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_01185 and OKGIIK_01190 are separated by 13 nucleotidesOKGIIK_01190 and OKGIIK_01195 are separated by 284 nucleotides OKGIIK_01185: OKGIIK_01185 - Glycosyl transferase, at 255,329 to 256,732 _01185 OKGIIK_01190: OKGIIK_01190 - Transport permease protein, at 256,746 to 257,540 _01190 OKGIIK_01195: OKGIIK_01195 - ABC transporter, ATP-binding protein, at 257,825 to 258,763 _01195 Position (kb) 256 257 258Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 255.764 kb on + strand, within OKGIIK_01185at 255.764 kb on + strand, within OKGIIK_01185at 255.765 kb on - strand, within OKGIIK_01185at 255.765 kb on - strand, within OKGIIK_01185at 255.777 kb on + strand, within OKGIIK_01185at 255.777 kb on + strand, within OKGIIK_01185at 255.778 kb on - strand, within OKGIIK_01185at 255.797 kb on + strand, within OKGIIK_01185at 255.797 kb on + strand, within OKGIIK_01185at 255.848 kb on + strand, within OKGIIK_01185at 255.848 kb on + strand, within OKGIIK_01185at 255.848 kb on + strand, within OKGIIK_01185at 255.848 kb on + strand, within OKGIIK_01185at 255.848 kb on + strand, within OKGIIK_01185at 255.849 kb on - strand, within OKGIIK_01185at 255.849 kb on - strand, within OKGIIK_01185at 255.849 kb on - strand, within OKGIIK_01185at 255.849 kb on - strand, within OKGIIK_01185at 255.849 kb on - strand, within OKGIIK_01185at 255.849 kb on - strand, within OKGIIK_01185at 255.849 kb on - strand, within OKGIIK_01185at 255.967 kb on + strand, within OKGIIK_01185at 255.967 kb on + strand, within OKGIIK_01185at 255.967 kb on + strand, within OKGIIK_01185at 255.967 kb on + strand, within OKGIIK_01185at 255.967 kb on + strand, within OKGIIK_01185at 255.967 kb on + strand, within OKGIIK_01185at 255.967 kb on + strand, within OKGIIK_01185at 255.967 kb on + strand, within OKGIIK_01185at 255.967 kb on + strand, within OKGIIK_01185at 255.968 kb on - strand, within OKGIIK_01185at 255.968 kb on - strand, within OKGIIK_01185at 255.968 kb on - strand, within OKGIIK_01185at 255.968 kb on - strand, within OKGIIK_01185at 255.968 kb on - strand, within OKGIIK_01185at 256.078 kb on + strand, within OKGIIK_01185at 256.079 kb on - strand, within OKGIIK_01185at 256.079 kb on - strand, within OKGIIK_01185at 256.079 kb on - strand, within OKGIIK_01185at 256.227 kb on + strand, within OKGIIK_01185at 256.228 kb on - strand, within OKGIIK_01185at 256.228 kb on - strand, within OKGIIK_01185at 256.322 kb on + strand, within OKGIIK_01185at 256.322 kb on + strand, within OKGIIK_01185at 256.322 kb on + strand, within OKGIIK_01185at 256.322 kb on + strand, within OKGIIK_01185at 256.323 kb on - strand, within OKGIIK_01185at 256.323 kb on - strand, within OKGIIK_01185at 256.323 kb on - strand, within OKGIIK_01185at 256.323 kb on - strand, within OKGIIK_01185at 256.449 kb on + strand, within OKGIIK_01185at 256.449 kb on + strand, within OKGIIK_01185at 256.449 kb on + strand, within OKGIIK_01185at 256.449 kb on + strand, within OKGIIK_01185at 256.450 kb on - strand, within OKGIIK_01185at 256.450 kb on - strand, within OKGIIK_01185at 256.450 kb on - strand, within OKGIIK_01185at 256.450 kb on - strand, within OKGIIK_01185at 256.457 kb on + strand, within OKGIIK_01185at 256.457 kb on + strand, within OKGIIK_01185at 256.458 kb on - strand, within OKGIIK_01185at 256.458 kb on - strand, within OKGIIK_01185at 256.458 kb on - strand, within OKGIIK_01185at 256.473 kb on + strand, within OKGIIK_01185at 256.474 kb on - strand, within OKGIIK_01185at 256.487 kb on + strand, within OKGIIK_01185at 256.487 kb on + strand, within OKGIIK_01185at 256.487 kb on + strand, within OKGIIK_01185at 256.487 kb on + strand, within OKGIIK_01185at 256.487 kb on + strand, within OKGIIK_01185at 256.488 kb on - strand, within OKGIIK_01185at 256.488 kb on - strand, within OKGIIK_01185at 256.488 kb on - strand, within OKGIIK_01185at 256.488 kb on - strand, within OKGIIK_01185at 256.488 kb on - strand, within OKGIIK_01185at 256.488 kb on - strand, within OKGIIK_01185at 256.570 kb on + strand, within OKGIIK_01185at 256.570 kb on + strand, within OKGIIK_01185at 256.570 kb on + strand, within OKGIIK_01185at 256.571 kb on - strand, within OKGIIK_01185at 256.579 kb on + strand, within OKGIIK_01185at 256.579 kb on + strand, within OKGIIK_01185at 256.579 kb on + strand, within OKGIIK_01185at 256.579 kb on + strand, within OKGIIK_01185at 256.579 kb on + strand, within OKGIIK_01185at 256.579 kb on + strand, within OKGIIK_01185at 256.580 kb on - strand, within OKGIIK_01185at 256.650 kb on + strandat 256.650 kb on + strandat 256.651 kb on - strandat 256.677 kb on + strandat 256.678 kb on - strandat 256.726 kb on + strandat 256.726 kb on + strandat 256.726 kb on + strandat 256.727 kb on - strandat 256.730 kb on + strandat 256.730 kb on + strandat 256.730 kb on + strandat 256.730 kb on + strandat 256.731 kb on - strandat 256.777 kb on - strandat 256.888 kb on - strand, within OKGIIK_01190at 256.888 kb on - strand, within OKGIIK_01190at 256.951 kb on - strand, within OKGIIK_01190at 256.951 kb on - strand, within OKGIIK_01190at 257.085 kb on - strand, within OKGIIK_01190at 257.171 kb on + strand, within OKGIIK_01190at 257.171 kb on + strand, within OKGIIK_01190at 257.205 kb on - strand, within OKGIIK_01190at 257.207 kb on - strand, within OKGIIK_01190at 257.238 kb on - strand, within OKGIIK_01190at 257.248 kb on + strand, within OKGIIK_01190at 257.328 kb on + strand, within OKGIIK_01190at 257.328 kb on + strand, within OKGIIK_01190at 257.329 kb on - strand, within OKGIIK_01190at 257.329 kb on - strand, within OKGIIK_01190at 257.329 kb on - strand, within OKGIIK_01190at 257.422 kb on - strand, within OKGIIK_01190at 257.589 kb on - strandat 257.752 kb on - strandat 257.802 kb on + strandat 257.951 kb on + strand, within OKGIIK_01195at 257.975 kb on + strand, within OKGIIK_01195at 257.975 kb on + strand, within OKGIIK_01195at 257.975 kb on + strand, within OKGIIK_01195at 257.976 kb on - strand, within OKGIIK_01195at 258.045 kb on + strand, within OKGIIK_01195at 258.075 kb on - strand, within OKGIIK_01195at 258.075 kb on - strand, within OKGIIK_01195at 258.235 kb on + strand, within OKGIIK_01195at 258.243 kb on + strand, within OKGIIK_01195at 258.244 kb on - strand, within OKGIIK_01195at 258.245 kb on + strand, within OKGIIK_01195at 258.246 kb on - strand, within OKGIIK_01195at 258.246 kb on - strand, within OKGIIK_01195at 258.246 kb on - strand, within OKGIIK_01195at 258.275 kb on - strand, within OKGIIK_01195at 258.278 kb on - strand, within OKGIIK_01195at 258.328 kb on + strand, within OKGIIK_01195at 258.352 kb on + strand, within OKGIIK_01195at 258.353 kb on - strand, within OKGIIK_01195at 258.468 kb on - strand, within OKGIIK_01195at 258.468 kb on - strand, within OKGIIK_01195at 258.520 kb on + strand, within OKGIIK_01195at 258.521 kb on - strand, within OKGIIK_01195

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cobalt chloride 512 uM
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255,764 + OKGIIK_01185 0.31 -1.1
255,764 + OKGIIK_01185 0.31 -1.3
255,765 - OKGIIK_01185 0.31 -2.3
255,765 - OKGIIK_01185 0.31 -0.8
255,777 + OKGIIK_01185 0.32 -0.8
255,777 + OKGIIK_01185 0.32 -0.5
255,778 - OKGIIK_01185 0.32 -0.7
255,797 + OKGIIK_01185 0.33 -1.9
255,797 + OKGIIK_01185 0.33 -1.5
255,848 + OKGIIK_01185 0.37 -2.7
255,848 + OKGIIK_01185 0.37 +1.5
255,848 + OKGIIK_01185 0.37 +1.5
255,848 + OKGIIK_01185 0.37 -0.1
255,848 + OKGIIK_01185 0.37 -1.8
255,849 - OKGIIK_01185 0.37 +0.8
255,849 - OKGIIK_01185 0.37 -0.5
255,849 - OKGIIK_01185 0.37 -0.5
255,849 - OKGIIK_01185 0.37 +1.5
255,849 - OKGIIK_01185 0.37 -0.8
255,849 - OKGIIK_01185 0.37 +1.5
255,849 - OKGIIK_01185 0.37 -1.1
255,967 + OKGIIK_01185 0.45 -0.8
255,967 + OKGIIK_01185 0.45 -2.2
255,967 + OKGIIK_01185 0.45 -1.8
255,967 + OKGIIK_01185 0.45 -0.1
255,967 + OKGIIK_01185 0.45 -1.6
255,967 + OKGIIK_01185 0.45 -1.9
255,967 + OKGIIK_01185 0.45 -1.6
255,967 + OKGIIK_01185 0.45 -0.1
255,967 + OKGIIK_01185 0.45 -1.7
255,968 - OKGIIK_01185 0.46 -0.1
255,968 - OKGIIK_01185 0.46 -0.1
255,968 - OKGIIK_01185 0.46 -2.1
255,968 - OKGIIK_01185 0.46 -1.3
255,968 - OKGIIK_01185 0.46 -2.7
256,078 + OKGIIK_01185 0.53 -0.8
256,079 - OKGIIK_01185 0.53 -2.2
256,079 - OKGIIK_01185 0.53 -1.3
256,079 - OKGIIK_01185 0.53 -2.4
256,227 + OKGIIK_01185 0.64 -3.2
256,228 - OKGIIK_01185 0.64 -0.5
256,228 - OKGIIK_01185 0.64 -2.4
256,322 + OKGIIK_01185 0.71 -1.3
256,322 + OKGIIK_01185 0.71 -2.4
256,322 + OKGIIK_01185 0.71 -1.1
256,322 + OKGIIK_01185 0.71 -2.1
256,323 - OKGIIK_01185 0.71 -0.5
256,323 - OKGIIK_01185 0.71 -2.4
256,323 - OKGIIK_01185 0.71 -1.9
256,323 - OKGIIK_01185 0.71 -0.3
256,449 + OKGIIK_01185 0.80 -2.9
256,449 + OKGIIK_01185 0.80 -1.1
256,449 + OKGIIK_01185 0.80 -0.1
256,449 + OKGIIK_01185 0.80 +0.3
256,450 - OKGIIK_01185 0.80 -0.5
256,450 - OKGIIK_01185 0.80 -2.1
256,450 - OKGIIK_01185 0.80 +0.5
256,450 - OKGIIK_01185 0.80 -0.5
256,457 + OKGIIK_01185 0.80 +0.2
256,457 + OKGIIK_01185 0.80 -0.8
256,458 - OKGIIK_01185 0.80 +0.4
256,458 - OKGIIK_01185 0.80 -0.9
256,458 - OKGIIK_01185 0.80 -2.5
256,473 + OKGIIK_01185 0.81 +1.5
256,474 - OKGIIK_01185 0.82 -2.5
256,487 + OKGIIK_01185 0.82 -1.6
256,487 + OKGIIK_01185 0.82 -2.2
256,487 + OKGIIK_01185 0.82 -1.1
256,487 + OKGIIK_01185 0.82 +1.5
256,487 + OKGIIK_01185 0.82 -1.1
256,488 - OKGIIK_01185 0.83 -2.9
256,488 - OKGIIK_01185 0.83 +0.7
256,488 - OKGIIK_01185 0.83 -3.7
256,488 - OKGIIK_01185 0.83 -2.2
256,488 - OKGIIK_01185 0.83 -1.3
256,488 - OKGIIK_01185 0.83 -0.1
256,570 + OKGIIK_01185 0.88 -1.5
256,570 + OKGIIK_01185 0.88 -1.3
256,570 + OKGIIK_01185 0.88 +0.2
256,571 - OKGIIK_01185 0.88 +0.1
256,579 + OKGIIK_01185 0.89 -2.3
256,579 + OKGIIK_01185 0.89 +0.7
256,579 + OKGIIK_01185 0.89 -1.6
256,579 + OKGIIK_01185 0.89 -2.3
256,579 + OKGIIK_01185 0.89 -1.9
256,579 + OKGIIK_01185 0.89 -1.1
256,580 - OKGIIK_01185 0.89 -1.8
256,650 + -2.2
256,650 + -0.5
256,651 - -1.3
256,677 + -2.4
256,678 - +0.9
256,726 + -2.2
256,726 + +0.0
256,726 + -2.6
256,727 - -0.8
256,730 + -3.5
256,730 + -0.8
256,730 + -0.5
256,730 + -2.4
256,731 - -0.8
256,777 - -1.5
256,888 - OKGIIK_01190 0.18 -1.1
256,888 - OKGIIK_01190 0.18 -3.2
256,951 - OKGIIK_01190 0.26 -1.6
256,951 - OKGIIK_01190 0.26 -0.1
257,085 - OKGIIK_01190 0.43 -1.1
257,171 + OKGIIK_01190 0.53 -1.1
257,171 + OKGIIK_01190 0.53 -0.8
257,205 - OKGIIK_01190 0.58 -1.5
257,207 - OKGIIK_01190 0.58 -1.8
257,238 - OKGIIK_01190 0.62 -0.8
257,248 + OKGIIK_01190 0.63 -2.1
257,328 + OKGIIK_01190 0.73 -1.6
257,328 + OKGIIK_01190 0.73 -0.5
257,329 - OKGIIK_01190 0.73 -1.3
257,329 - OKGIIK_01190 0.73 -1.1
257,329 - OKGIIK_01190 0.73 -1.3
257,422 - OKGIIK_01190 0.85 -0.8
257,589 - -3.5
257,752 - -0.7
257,802 + +1.5
257,951 + OKGIIK_01195 0.13 -1.6
257,975 + OKGIIK_01195 0.16 -1.8
257,975 + OKGIIK_01195 0.16 -2.1
257,975 + OKGIIK_01195 0.16 -0.5
257,976 - OKGIIK_01195 0.16 -1.3
258,045 + OKGIIK_01195 0.23 -0.8
258,075 - OKGIIK_01195 0.27 -1.3
258,075 - OKGIIK_01195 0.27 -1.3
258,235 + OKGIIK_01195 0.44 -1.1
258,243 + OKGIIK_01195 0.45 -1.1
258,244 - OKGIIK_01195 0.45 -2.4
258,245 + OKGIIK_01195 0.45 -1.3
258,246 - OKGIIK_01195 0.45 -1.5
258,246 - OKGIIK_01195 0.45 -2.2
258,246 - OKGIIK_01195 0.45 -0.1
258,275 - OKGIIK_01195 0.48 +0.5
258,278 - OKGIIK_01195 0.48 -0.1
258,328 + OKGIIK_01195 0.54 -1.9
258,352 + OKGIIK_01195 0.56 -0.1
258,353 - OKGIIK_01195 0.56 -1.1
258,468 - OKGIIK_01195 0.68 -0.5
258,468 - OKGIIK_01195 0.68 -5.1
258,520 + OKGIIK_01195 0.74 +1.5
258,521 - OKGIIK_01195 0.74 -0.8

Or see this region's nucleotide sequence