Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_06990

Experiment: R2A_PIPES with Cadmium chloride 32 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntuup and OKGIIK_06990 are separated by 3 nucleotidesOKGIIK_06990 and recJ overlap by 4 nucleotides OKGIIK_06985: uup - ABC transporter ATP-binding protein, at 1,547,601 to 1,549,544 uup OKGIIK_06990: OKGIIK_06990 - Phosphoglycerate mutase, at 1,549,548 to 1,550,468 _06990 OKGIIK_06995: recJ - single-stranded-DNA-specific exonuclease RecJ, at 1,550,465 to 1,552,336 recJ Position (kb) 1549 1550 1551Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1548.564 kb on + strand, within uupat 1548.565 kb on - strand, within uupat 1548.565 kb on - strand, within uupat 1548.765 kb on + strand, within uupat 1548.766 kb on - strand, within uupat 1548.766 kb on - strand, within uupat 1549.428 kb on + strandat 1549.428 kb on + strandat 1549.428 kb on + strandat 1549.428 kb on + strandat 1549.428 kb on + strandat 1549.428 kb on + strandat 1549.428 kb on + strandat 1549.428 kb on + strandat 1549.428 kb on + strandat 1549.428 kb on + strandat 1549.428 kb on + strandat 1549.428 kb on + strandat 1549.428 kb on + strandat 1549.428 kb on + strandat 1549.428 kb on + strandat 1549.428 kb on + strandat 1549.428 kb on + strandat 1549.428 kb on + strandat 1549.428 kb on + strandat 1549.428 kb on + strandat 1549.428 kb on + strandat 1549.428 kb on + strandat 1549.428 kb on + strandat 1549.428 kb on + strandat 1549.428 kb on + strandat 1549.428 kb on + strandat 1549.428 kb on + strandat 1549.428 kb on + strandat 1549.428 kb on + strandat 1549.429 kb on - strandat 1549.429 kb on - strandat 1549.429 kb on - strandat 1549.429 kb on - strandat 1549.429 kb on - strandat 1549.429 kb on - strandat 1549.429 kb on - strandat 1549.429 kb on - strandat 1549.429 kb on - strandat 1549.429 kb on - strandat 1549.429 kb on - strandat 1549.429 kb on - strandat 1549.429 kb on - strandat 1549.429 kb on - strandat 1549.519 kb on + strandat 1549.520 kb on - strandat 1549.520 kb on - strandat 1549.520 kb on - strandat 1549.961 kb on + strand, within OKGIIK_06990at 1550.320 kb on + strand, within OKGIIK_06990at 1550.320 kb on + strand, within OKGIIK_06990at 1550.321 kb on - strand, within OKGIIK_06990at 1550.552 kb on + strandat 1550.552 kb on + strandat 1550.553 kb on - strandat 1550.553 kb on - strandat 1550.553 kb on - strandat 1550.702 kb on + strand, within recJat 1550.702 kb on + strand, within recJat 1550.702 kb on + strand, within recJat 1550.703 kb on - strand, within recJat 1550.703 kb on - strand, within recJat 1550.777 kb on + strand, within recJat 1550.777 kb on + strand, within recJat 1550.777 kb on + strand, within recJat 1550.777 kb on + strand, within recJat 1550.777 kb on + strand, within recJat 1550.777 kb on + strand, within recJat 1550.777 kb on + strand, within recJat 1550.777 kb on + strand, within recJat 1550.777 kb on + strand, within recJat 1550.777 kb on + strand, within recJat 1550.777 kb on + strand, within recJat 1550.777 kb on + strand, within recJat 1550.777 kb on + strand, within recJat 1550.777 kb on + strand, within recJat 1550.777 kb on + strand, within recJat 1550.778 kb on - strand, within recJat 1550.778 kb on - strand, within recJat 1550.778 kb on - strand, within recJat 1550.778 kb on - strand, within recJat 1550.778 kb on - strand, within recJat 1550.778 kb on - strand, within recJat 1550.778 kb on - strand, within recJat 1550.778 kb on - strand, within recJat 1550.778 kb on - strand, within recJat 1550.778 kb on - strand, within recJat 1551.092 kb on + strand, within recJat 1551.092 kb on + strand, within recJat 1551.092 kb on + strand, within recJat 1551.092 kb on + strand, within recJat 1551.092 kb on + strand, within recJat 1551.092 kb on + strand, within recJat 1551.092 kb on + strand, within recJat 1551.093 kb on - strand, within recJat 1551.093 kb on - strand, within recJat 1551.093 kb on - strand, within recJat 1551.093 kb on - strand, within recJat 1551.093 kb on - strand, within recJat 1551.093 kb on - strand, within recJat 1551.093 kb on - strand, within recJat 1551.093 kb on - strand, within recJat 1551.093 kb on - strand, within recJat 1551.093 kb on - strand, within recJ

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride 32 uM
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1,548,564 + uup OKGIIK_06985 0.50 +1.6
1,548,565 - uup OKGIIK_06985 0.50 -0.0
1,548,565 - uup OKGIIK_06985 0.50 -1.6
1,548,765 + uup OKGIIK_06985 0.60 -0.7
1,548,766 - uup OKGIIK_06985 0.60 -0.5
1,548,766 - uup OKGIIK_06985 0.60 -0.7
1,549,428 + +0.2
1,549,428 + -1.6
1,549,428 + -0.8
1,549,428 + -0.4
1,549,428 + +0.6
1,549,428 + -0.6
1,549,428 + +0.6
1,549,428 + -0.4
1,549,428 + -1.9
1,549,428 + -0.0
1,549,428 + +1.6
1,549,428 + +1.6
1,549,428 + -1.0
1,549,428 + -0.8
1,549,428 + +3.9
1,549,428 + -1.4
1,549,428 + -1.4
1,549,428 + -1.9
1,549,428 + +3.2
1,549,428 + -2.0
1,549,428 + -1.8
1,549,428 + -0.4
1,549,428 + +0.3
1,549,428 + -1.5
1,549,428 + -1.6
1,549,428 + -0.0
1,549,428 + +0.6
1,549,428 + -0.5
1,549,428 + -0.8
1,549,429 - -0.6
1,549,429 - -0.0
1,549,429 - -0.4
1,549,429 - -0.1
1,549,429 - -0.8
1,549,429 - -0.0
1,549,429 - -2.4
1,549,429 - -1.9
1,549,429 - -0.8
1,549,429 - +2.2
1,549,429 - -0.1
1,549,429 - +0.9
1,549,429 - -2.8
1,549,429 - -1.4
1,549,519 + +0.2
1,549,520 - -1.4
1,549,520 - -1.4
1,549,520 - -1.0
1,549,961 + OKGIIK_06990 0.45 +0.2
1,550,320 + OKGIIK_06990 0.84 -2.0
1,550,320 + OKGIIK_06990 0.84 -0.7
1,550,321 - OKGIIK_06990 0.84 -2.8
1,550,552 + -1.8
1,550,552 + -0.8
1,550,553 - -1.9
1,550,553 - -0.4
1,550,553 - +0.2
1,550,702 + recJ OKGIIK_06995 0.13 -0.0
1,550,702 + recJ OKGIIK_06995 0.13 +1.6
1,550,702 + recJ OKGIIK_06995 0.13 -0.8
1,550,703 - recJ OKGIIK_06995 0.13 +0.6
1,550,703 - recJ OKGIIK_06995 0.13 -1.8
1,550,777 + recJ OKGIIK_06995 0.17 +0.2
1,550,777 + recJ OKGIIK_06995 0.17 -1.6
1,550,777 + recJ OKGIIK_06995 0.17 +1.6
1,550,777 + recJ OKGIIK_06995 0.17 -0.3
1,550,777 + recJ OKGIIK_06995 0.17 -1.4
1,550,777 + recJ OKGIIK_06995 0.17 -1.2
1,550,777 + recJ OKGIIK_06995 0.17 +0.8
1,550,777 + recJ OKGIIK_06995 0.17 -0.3
1,550,777 + recJ OKGIIK_06995 0.17 -0.0
1,550,777 + recJ OKGIIK_06995 0.17 -0.0
1,550,777 + recJ OKGIIK_06995 0.17 +0.9
1,550,777 + recJ OKGIIK_06995 0.17 -0.6
1,550,777 + recJ OKGIIK_06995 0.17 +0.7
1,550,777 + recJ OKGIIK_06995 0.17 -0.4
1,550,777 + recJ OKGIIK_06995 0.17 -1.9
1,550,778 - recJ OKGIIK_06995 0.17 +1.3
1,550,778 - recJ OKGIIK_06995 0.17 -0.8
1,550,778 - recJ OKGIIK_06995 0.17 +2.1
1,550,778 - recJ OKGIIK_06995 0.17 +2.9
1,550,778 - recJ OKGIIK_06995 0.17 -1.4
1,550,778 - recJ OKGIIK_06995 0.17 -1.4
1,550,778 - recJ OKGIIK_06995 0.17 +0.2
1,550,778 - recJ OKGIIK_06995 0.17 -1.0
1,550,778 - recJ OKGIIK_06995 0.17 -0.2
1,550,778 - recJ OKGIIK_06995 0.17 -1.8
1,551,092 + recJ OKGIIK_06995 0.33 -0.9
1,551,092 + recJ OKGIIK_06995 0.33 -1.2
1,551,092 + recJ OKGIIK_06995 0.33 +0.6
1,551,092 + recJ OKGIIK_06995 0.33 +1.0
1,551,092 + recJ OKGIIK_06995 0.33 +1.6
1,551,092 + recJ OKGIIK_06995 0.33 -0.9
1,551,092 + recJ OKGIIK_06995 0.33 -2.0
1,551,093 - recJ OKGIIK_06995 0.34 +0.6
1,551,093 - recJ OKGIIK_06995 0.34 +1.0
1,551,093 - recJ OKGIIK_06995 0.34 -1.4
1,551,093 - recJ OKGIIK_06995 0.34 -2.0
1,551,093 - recJ OKGIIK_06995 0.34 +0.5
1,551,093 - recJ OKGIIK_06995 0.34 -0.0
1,551,093 - recJ OKGIIK_06995 0.34 -0.3
1,551,093 - recJ OKGIIK_06995 0.34 +0.5
1,551,093 - recJ OKGIIK_06995 0.34 -1.4
1,551,093 - recJ OKGIIK_06995 0.34 +0.6

Or see this region's nucleotide sequence