Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_03130

Experiment: R2A_PIPES with Cadmium chloride 32 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdapD and OKGIIK_03125 are separated by 27 nucleotidesOKGIIK_03125 and OKGIIK_03130 overlap by 4 nucleotidesOKGIIK_03130 and dapE are separated by 10 nucleotides OKGIIK_03120: dapD - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, at 707,805 to 708,632 dapD OKGIIK_03125: OKGIIK_03125 - hypothetical protein, at 708,660 to 709,127 _03125 OKGIIK_03130: OKGIIK_03130 - Arsenate reductase, at 709,124 to 709,480 _03130 OKGIIK_03135: dapE - succinyl-diaminopimelate desuccinylase, at 709,491 to 710,693 dapE Position (kb) 709 710Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 708.664 kb on - strandat 708.675 kb on + strandat 708.703 kb on + strandat 708.703 kb on + strandat 708.703 kb on + strandat 708.703 kb on + strandat 708.703 kb on + strandat 708.703 kb on + strandat 708.704 kb on - strandat 708.704 kb on - strandat 708.704 kb on - strandat 708.704 kb on - strandat 708.819 kb on + strand, within OKGIIK_03125at 708.841 kb on + strand, within OKGIIK_03125at 708.841 kb on + strand, within OKGIIK_03125at 708.842 kb on - strand, within OKGIIK_03125at 708.842 kb on - strand, within OKGIIK_03125at 708.879 kb on + strand, within OKGIIK_03125at 708.879 kb on + strand, within OKGIIK_03125at 708.879 kb on + strand, within OKGIIK_03125at 708.879 kb on + strand, within OKGIIK_03125at 708.879 kb on + strand, within OKGIIK_03125at 708.879 kb on + strand, within OKGIIK_03125at 708.879 kb on + strand, within OKGIIK_03125at 708.879 kb on + strand, within OKGIIK_03125at 708.879 kb on + strand, within OKGIIK_03125at 708.879 kb on + strand, within OKGIIK_03125at 708.879 kb on + strand, within OKGIIK_03125at 708.879 kb on + strand, within OKGIIK_03125at 708.879 kb on + strand, within OKGIIK_03125at 708.879 kb on + strand, within OKGIIK_03125at 708.879 kb on + strand, within OKGIIK_03125at 708.879 kb on + strand, within OKGIIK_03125at 708.879 kb on + strand, within OKGIIK_03125at 708.880 kb on - strand, within OKGIIK_03125at 708.880 kb on - strand, within OKGIIK_03125at 708.880 kb on - strand, within OKGIIK_03125at 708.880 kb on - strand, within OKGIIK_03125at 708.880 kb on - strand, within OKGIIK_03125at 709.024 kb on + strand, within OKGIIK_03125at 709.024 kb on + strand, within OKGIIK_03125at 709.024 kb on + strand, within OKGIIK_03125at 709.024 kb on + strand, within OKGIIK_03125at 709.202 kb on + strand, within OKGIIK_03130at 709.202 kb on + strand, within OKGIIK_03130at 709.202 kb on + strand, within OKGIIK_03130at 709.202 kb on + strand, within OKGIIK_03130at 709.202 kb on + strand, within OKGIIK_03130at 709.202 kb on + strand, within OKGIIK_03130at 709.202 kb on + strand, within OKGIIK_03130at 709.202 kb on + strand, within OKGIIK_03130at 709.202 kb on + strand, within OKGIIK_03130at 709.202 kb on + strand, within OKGIIK_03130at 709.202 kb on + strand, within OKGIIK_03130at 709.203 kb on - strand, within OKGIIK_03130at 709.203 kb on - strand, within OKGIIK_03130at 709.203 kb on - strand, within OKGIIK_03130at 709.203 kb on - strand, within OKGIIK_03130at 709.203 kb on - strand, within OKGIIK_03130at 709.203 kb on - strand, within OKGIIK_03130at 709.203 kb on - strand, within OKGIIK_03130at 709.203 kb on - strand, within OKGIIK_03130

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride 32 uM
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708,664 - -1.7
708,675 + -1.6
708,703 + -1.0
708,703 + +0.1
708,703 + +0.0
708,703 + -0.6
708,703 + -2.0
708,703 + -0.2
708,704 - -2.0
708,704 - -1.6
708,704 - -0.8
708,704 - -1.3
708,819 + OKGIIK_03125 0.34 +1.1
708,841 + OKGIIK_03125 0.39 -1.4
708,841 + OKGIIK_03125 0.39 -0.6
708,842 - OKGIIK_03125 0.39 +0.0
708,842 - OKGIIK_03125 0.39 -1.0
708,879 + OKGIIK_03125 0.47 -1.6
708,879 + OKGIIK_03125 0.47 -3.8
708,879 + OKGIIK_03125 0.47 +0.6
708,879 + OKGIIK_03125 0.47 -0.0
708,879 + OKGIIK_03125 0.47 -0.6
708,879 + OKGIIK_03125 0.47 -1.0
708,879 + OKGIIK_03125 0.47 -1.4
708,879 + OKGIIK_03125 0.47 -0.6
708,879 + OKGIIK_03125 0.47 -2.6
708,879 + OKGIIK_03125 0.47 +0.1
708,879 + OKGIIK_03125 0.47 +0.4
708,879 + OKGIIK_03125 0.47 -0.2
708,879 + OKGIIK_03125 0.47 -0.7
708,879 + OKGIIK_03125 0.47 -1.7
708,879 + OKGIIK_03125 0.47 +0.6
708,879 + OKGIIK_03125 0.47 +0.0
708,879 + OKGIIK_03125 0.47 +0.8
708,880 - OKGIIK_03125 0.47 -0.9
708,880 - OKGIIK_03125 0.47 -0.9
708,880 - OKGIIK_03125 0.47 -0.6
708,880 - OKGIIK_03125 0.47 -0.9
708,880 - OKGIIK_03125 0.47 -0.9
709,024 + OKGIIK_03125 0.78 -2.8
709,024 + OKGIIK_03125 0.78 +0.4
709,024 + OKGIIK_03125 0.78 -0.6
709,024 + OKGIIK_03125 0.78 -1.6
709,202 + OKGIIK_03130 0.22 -2.6
709,202 + OKGIIK_03130 0.22 -1.4
709,202 + OKGIIK_03130 0.22 -0.2
709,202 + OKGIIK_03130 0.22 -2.0
709,202 + OKGIIK_03130 0.22 -1.0
709,202 + OKGIIK_03130 0.22 -0.9
709,202 + OKGIIK_03130 0.22 -0.9
709,202 + OKGIIK_03130 0.22 -1.2
709,202 + OKGIIK_03130 0.22 -0.7
709,202 + OKGIIK_03130 0.22 -1.8
709,202 + OKGIIK_03130 0.22 -0.7
709,203 - OKGIIK_03130 0.22 -1.8
709,203 - OKGIIK_03130 0.22 -0.9
709,203 - OKGIIK_03130 0.22 -2.4
709,203 - OKGIIK_03130 0.22 -1.1
709,203 - OKGIIK_03130 0.22 -1.9
709,203 - OKGIIK_03130 0.22 +1.4
709,203 - OKGIIK_03130 0.22 -2.3
709,203 - OKGIIK_03130 0.22 +1.4

Or see this region's nucleotide sequence